Doil Choi

Department of Plant Science, Seoul National University

Affiliated withSeoul National University

Research Area

Biology

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2018

Other Publications

Article	Year
Identification of the down-regulated genes in a mat1-2-deleted strain of Gibberella zeae, using cDNA subtraction and microarray analysis. Fungal genetics and biology : FG & B\| PubMed ID: 16504554	2006
Bases of biocontrol: sequence predicts synthesis and mode of action of agrocin 84, the Trojan horse antibiotic that controls crown gall. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16731618	2006
Exploitation of pepper EST-SSRs and an SSR-based linkage map. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 17047912	2006
Transcriptional regulation of the respiratory genes in the cyanobacterium Synechocystis sp. PCC 6803 during the early response to glucose feeding. Plant physiology\| PubMed ID: 17827271	2007
Integration of cytogenetic and genetic linkage maps unveils the physical architecture of tomato chromosome 2. Genetics\| PubMed ID: 18622034	2008
The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL). Comparative and functional genomics\| PubMed ID: 18629226	2005
BAC-derived markers converted from RFLP linked to Phytophthora capsici resistance in pepper (Capsicum annuum L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 18795251	2008
Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome. BMC plant biology\| PubMed ID: 18844979	2008
SNUGB: a versatile genome browser supporting comparative and functional fungal genomics. BMC genomics\| PubMed ID: 19055845	2008
Evolution of ribosomal DNA-derived satellite repeat in tomato genome. BMC plant biology\| PubMed ID: 19351415	2009
In planta expression screens of Phytophthora infestans RXLR effectors reveal diverse phenotypes, including activation of the Solanum bulbocastanum disease resistance protein Rpi-blb2. The Plant cell\| PubMed ID: 19794118	2009
Fine mapping of pepper trichome locus 1 controlling trichome formation in Capsicum annuum L. CM334. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 20033390	2010
Molecular mapping and characterization of a single dominant gene controlling CMV resistance in peppers (Capsicum annuum L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 20180096	2010
CaMsrB2, pepper methionine sulfoxide reductase B2, is a novel defense regulator against oxidative stress and pathogen attack. Plant physiology\| PubMed ID: 20643759	2010
Characterization and genetic analysis of a low-temperature-sensitive mutant, sy-2, in Capsicum chinense. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 20886202	2011
Trichome density of main stem is tightly linked to PepMoV resistance in chili pepper (Capsicum annuum L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 21184049	2011
Comparative analysis of pepper and tomato reveals euchromatin expansion of pepper genome caused by differential accumulation of Ty3/Gypsy-like elements. BMC genomics\| PubMed ID: 21276256	2011
Positive-selection and ligation-independent cloning vectors for large scale in planta expression for plant functional genomics. Molecules and cells\| PubMed ID: 21340673	2010
Use of a secretion trap screen in pepper following Phytophthora capsici infection reveals novel functions of secreted plant proteins in modulating cell death. Molecular plant-microbe interactions : MPMI\| PubMed ID: 21542767	2011
A common plant cell-wall protein HyPRP1 has dual roles as a positive regulator of cell death and a negative regulator of basal defense against pathogens. The Plant journal : for cell and molecular biology\| PubMed ID: 22023393	2012
Evolution of the large genome in Capsicum annuum occurred through accumulation of single-type long terminal repeat retrotransposons and their derivatives. The Plant journal : for cell and molecular biology\| PubMed ID: 22074025	2012
Ectopic expression of Capsicum-specific cell wall protein Capsicum annuum senescence-delaying 1 (CaSD1) delays senescence and induces trichome formation in Nicotiana benthamiana. Molecules and cells\| PubMed ID: 22441673	2012
RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23132937	2012
Intraspecies differences in cold hardiness, carbohydrate content and Î²-amylase gene expression of Vaccinium corymbosum during cold acclimation and deacclimation. Tree physiology\| PubMed ID: 23135736	2012
A pepper (Capsicum annuum L.) metacaspase 9 (Camc9) plays a role in pathogen-induced cell death in plants. Molecular plant pathology\| PubMed ID: 23522353	2013
Multiple classes of immune-related proteases associated with the cell death response in pepper plants. PloS one\| PubMed ID: 23696830	2013
The hot pepper (Capsicum annuum) microRNA transcriptome reveals novel and conserved targets: a foundation for understanding MicroRNA functional roles in hot pepper. PloS one\| PubMed ID: 23737975	2013
Capsicum annuum homeobox 1 (CaHB1) is a nuclear factor that has roles in plant development, salt tolerance, and pathogen defense. Biochemical and biophysical research communications\| PubMed ID: 24239887	2013
Identification of novel pepper genes involved in Bax- or INF1-mediated cell death responses by high-throughput virus-induced gene silencing. International journal of molecular sciences\| PubMed ID: 24256816	2013
Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species. Nature genetics\| PubMed ID: 24441736	2014
Major repeat components covering one-third of the ginseng (Panax ginseng C.A. Meyer) genome and evidence for allotetraploidy. The Plant journal : for cell and molecular biology\| PubMed ID: 24456463	2014
Identification of gene-specific polymorphisms and association with capsaicin pathway metabolites in Capsicum annuum L. collections. PloS one\| PubMed ID: 24475113	2014
A simple method for screening of plant NBS-LRR genes that confer a hypersensitive response to plant viruses and its application for screening candidate pepper genes against Pepper mottle vir... Journal of virological methods\| PubMed ID: 24552951	2014
Rpi-blb2-mediated late blight resistance in Nicotiana benthamiana requires SGT1 and salicylic acid-mediated signaling but not RAR1 or HSP90. FEBS letters\| PubMed ID: 24582656	2014
A pepper MSRB2 gene confers drought tolerance in rice through the protection of chloroplast-targeted genes. PloS one\| PubMed ID: 24614245	2014
dbCRY: a Web-based comparative and evolutionary genomics platform for blue-light receptors. Database : the journal of biological databases and curation\| PubMed ID: 24816342	2014
Cucumber Pti1-L is a cytoplasmic protein kinase involved in defense responses and salt tolerance. Journal of plant physiology\| PubMed ID: 24877673	2014
Multiple recognition of RXLR effectors is associated with nonhost resistance of pepper against Phytophthora infestans. The New phytologist\| PubMed ID: 24889686	2014
Combined use of bulked segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 25208646	2014
Tomato Male sterile 1035 is essential for pollen development and meiosis in anthers. Journal of experimental botany\| PubMed ID: 25262227	2014
Rpi-blb2-Mediated Hypersensitive Cell Death Caused by Phytophthora infestans AVRblb2 Requires SGT1, but not EDS1, NDR1, Salicylic Acid-, Jasmonic Acid-, or Ethylene-Mediated Signaling. The plant pathology journal\| PubMed ID: 25289011	2014
Integrative structural annotation of de novo RNA-Seq provides an accurate reference gene set of the enormous genome of the onion (Allium cepa L.). DNA research : an international journal for rapid publication of reports on genes and genomes\| PubMed ID: 25362073	2015
RNA-dependent RNA polymerase (NIb) of the potyviruses is an avirulence factor for the broad-spectrum resistance gene Pvr4 in Capsicum annuum cv. CM334. PloS one\| PubMed ID: 25760376	2015
Molecular characterization of Pvr9 that confers a hypersensitive response to Pepper mottle virus (a potyvirus) in Nicotiana benthamiana. Virology\| PubMed ID: 25776758	2015
De Novo Transcriptome Analysis to Identify Anthocyanin Biosynthesis Genes Responsible for Tissue-Specific Pigmentation in Zoysiagrass (Zoysia japonica Steud.). PloS one\| PubMed ID: 25905914	2015
Recent progresses on functional genomics in plant defense. Briefings in functional genomics\| PubMed ID: 26209046	2015
Identification of candidate genes associated with fertility restoration of cytoplasmic male-sterility in onion (Allium cepa L.) using a combination of bulked segregant analysis and RNA-seq. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 26215184	2015
Metabolomic Characterization of Hot Pepper (Capsicum annuum "CM334") during Fruit Development. Journal of agricultural and food chemistry\| PubMed ID: 26465673	2015
Molecular marker development and genetic diversity exploration by RNA-seq in Platycodon grandiflorum. Genome / National Research Council Canada = Génome / Conseil national de recherches Canada\| PubMed ID: 26501479	2015
Major Quantitative Trait Loci and Putative Candidate Genes for Powdery Mildew Resistance and Fruit-Related Traits Revealed by an Intraspecific Genetic Map for Watermelon (Citrullus lanatus v... PloS one\| PubMed ID: 26700647	2015
An ultra-high-density bin map facilitates high-throughput QTL mapping of horticultural traits in pepper (Capsicum annuum). DNA research : an international journal for rapid publication of reports on genes and genomes\| PubMed ID: 26744365	2016
Virus-induced gene silencing reveals signal transduction components required for the Pvr9-mediated hypersensitive response in Nicotiana benthamiana. Virology\| PubMed ID: 27236305	2016
Fine mapping of Restorer-of-fertility in pepper (Capsicum annuum L.) identified a candidate gene encoding a pentatricopeptide repeat (PPR)-containing protein. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 27470425	2016
Superoxide serves as a putative signal molecule for plant cell division: overexpression of CaRLK1 promotes the plant cell cycle via accumulation of O and decrease in H O. Physiologia plantarum\| PubMed ID: 27528370	2017
Comparative analyses of ubiquitin-like ATG8 and cysteine protease ATG4 autophagy genes in the plant lineage and cross-kingdom processing of ATG8 by ATG4. Autophagy\| PubMed ID: 27540766	2016
Genome-Wide Comparative Analyses Reveal the Dynamic Evolution of Nucleotide-Binding Leucine-Rich Repeat Gene Family among Solanaceae Plants. Frontiers in plant science\| PubMed ID: 27559340	2016
Divergent evolution of multiple virus-resistance genes from a progenitor in Capsicum spp. The New phytologist\| PubMed ID: 27612097	2017
Genome-wide analysis of Dof transcription factors reveals functional characteristics during development and response to biotic stresses in pepper. Scientific reports\| PubMed ID: 27653666	2016
Genome-Wide Divergence and Linkage Disequilibrium Analyses for Revealed by Genome-Anchored Single Nucleotide Polymorphisms. Frontiers in plant science\| PubMed ID: 27857720	2016
Genome-wide Diversity and Association Mapping for Capsaicinoids and Fruit Weight in Capsicum annuum L. Scientific reports\| PubMed ID: 27901114	2016
Current Understandings of Plant Nonhost Resistance. Molecular plant-microbe interactions : MPMI\| PubMed ID: 27925500	2017
Genome analysis of Hibiscus syriacus provides insights of polyploidization and indeterminate flowering in woody plants. DNA research : an international journal for rapid publication of reports on genes and genomes\| PubMed ID: 28011721	2017
Harnessing anthocyanin-rich fruit: a visible reporter for tracing virus-induced gene silencing in pepper fruit. Plant methods\| PubMed ID: 28053648	2017
Spatiotemporal Monitoring of Effectors via Type III Secretion Using Split Fluorescent Protein Fragments. The Plant cell\| PubMed ID: 28619883	2017
Expansion of sesquiterpene biosynthetic gene clusters in pepper confers nonhost resistance to the Irish potato famine pathogen. The New phytologist\| PubMed ID: 28631815	2017
Nicotiana benthamiana Matrix Metalloprotease 1 (NMMP1) gene confers disease resistance to Phytophthora infestans in tobacco and potato plants. Journal of plant physiology\| PubMed ID: 28888160	2017
Fine mapping of the genic male-sterile ms gene in Capsicum annuum L. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 29032401	2018
New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication. Genome biology\| PubMed ID: 29089032	2017
HSP70s Enhance a Phytophthora infestans Effector-Induced Cell Death via an MAPK Cascade in Nicotiana benthamiana. Molecular plant-microbe interactions : MPMI\| PubMed ID: 29140163	2018
Suppression or Activation of Immune Responses by Predicted Secreted Proteins of the Soybean Rust Pathogen Phakopsora pachyrhizi. Molecular plant-microbe interactions : MPMI\| PubMed ID: 29144203	2018
Molecular Mapping of , a Novel Locus Conferring Resistance to Powdery Mildew in Pepper (). Frontiers in plant science\| PubMed ID: 29276524	2017
Identification of a molecular marker tightly linked to bacterial wilt resistance in tomato by genome-wide SNP analysis. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 29352323	2018
New role of LTR-retrotransposons for emergence and expansion of disease-resistance genes and high-copy gene families in plants. BMB reports\| PubMed ID: 29353598	2018
Genome and evolution of the shade-requiring medicinal herb Panax ginseng. Plant biotechnology journal\| PubMed ID: 29604169	2018
Coiled-coil and leucine-rich repeat domain of the potyvirus resistance protein, Pvr4, has distinct role in signaling and pathogen recognition. Molecular plant-microbe interactions : MPMI\| PubMed ID: 29663867	2018