Rajarshi Chakrabarti

Department of Chemistry, Indian Institute of Technology Bombay

Affiliated withIndian Institute of Technology Bombay

Research Area

Bioengineering

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2025

Other Publications

Article	Year
Spontaneous Unzipping of Xylonucleic Acid Assisted by a Single-Walled Carbon Nanotube: A Computational Study. The journal of physical chemistry. B\| PubMed ID: 27046289	2016
Tracer diffusion in a sea of polymers with binding zones: mobile vs. frozen traps. Soft matter\| PubMed ID: 27714359	2016
Can an ammonium-based room temperature ionic liquid counteract the urea-induced denaturation of a small peptide? Physical chemistry chemical physics : PCCP\| PubMed ID: 28262899	2017
Rheological consequences of wet and dry friction in a dumbbell model with hydrodynamic interactions and internal viscosity. The Journal of chemical physics\| PubMed ID: 30195310	2018
Salt Induced Structural Collapse, Swelling, and Signature of Aggregation of Two ssDNA Strands: Insights from Molecular Dynamics Simulation. The journal of physical chemistry. B\| PubMed ID: 30540471	2019
Azadirachtin inhibits amyloid formation, disaggregates pre-formed fibrils and protects pancreatic β-cells from human islet amyloid polypeptide/amylin-induced cytotoxicity. The Biochemical journal\| PubMed ID: 30814273	2019
Enhanced diffusion, swelling, and slow reconfiguration of a single chain in non-Gaussian active bath. The Journal of chemical physics\| PubMed ID: 30849884	2019
Transport of probe particles in a polymer network: effects of probe size, network rigidity and probe-polymer interaction. Soft matter\| PubMed ID: 31681926	2019
Choline Chloride as a Nano-Crowder Protects HP-36 from Urea-Induced Denaturation: Insights from Solvent Dynamics and Protein-Solvent Interactions. Chemphyschem : a European journal of chemical physics and physical chemistry\| PubMed ID: 31971306	2020
Escape of a passive particle from an activity-induced energy landscape: emergence of slow and fast effective diffusion. Soft matter\| PubMed ID: 32657294	2020
Directing the Diffusion of a Nonmagnetic Nanosized Active Particle with External Magnetic Fields. The journal of physical chemistry. B\| PubMed ID: 32790376	2020
Translational and rotational dynamics of a self-propelled Janus probe in crowded environments. Soft matter\| PubMed ID: 32822444	2020
Microscopic structural features of water in aqueous-reline mixtures of varying compositions. Physical chemistry chemical physics : PCCP\| PubMed ID: 33532810	2021
Effect of Stapling on the Thermodynamics of mdm2-p53 Binding. Journal of chemical information and modeling\| PubMed ID: 33830760	2021
How important are fluctuations in the treatment of internal friction in polymers? Soft matter\| PubMed ID: 34259278	2021
Stochastic resetting and first arrival subjected to Gaussian noise and Poisson white noise. Physical review. E\| PubMed ID: 34654068	2021
In Silico Elucidation of Molecular Picture of Water-Choline Chloride Mixture. The journal of physical chemistry. B\| PubMed ID: 34812630	2021
Transport of a self-propelled tracer through a hairy cylindrical channel: interplay of stickiness and activity. Soft matter\| PubMed ID: 35060583	2022
Motion of an active particle with dynamical disorder. Soft matter\| PubMed ID: 35244134	2022
Chemically symmetric and asymmetric self-driven rigid dumbbells in a 2D polymer gel. Soft matter\| PubMed ID: 35311848	2022
Computational design of stapled peptide inhibitor against SARS-CoV-2 receptor binding domain. Peptide science (Hoboken, N.J.)\| PubMed ID: 35574509	2022
Structure and Orientation of Water and Choline Chloride Molecules around a Methane Hydrophobe: A Computer Simulation Study. Chemphyschem : a European journal of chemical physics and physical chemistry\| PubMed ID: 35851985	2022
Migration of active rings in porous media. Physical review. E\| PubMed ID: 35974648	2022
Distinct mode of membrane interaction and disintegration by diverse class of antimicrobial peptides. Biochimica et biophysica acta. Biomembranes\| PubMed ID: 36100074	2022
In Silico Studies of Active Probe Dynamics in Crowded Media. ACS omega\| PubMed ID: 36188301	2022
Dynamics of self-propelled tracer particles inside a polymer network. Physical chemistry chemical physics : PCCP\| PubMed ID: 36541408	2023
Dynamics of a spherical self-propelled tracer in a polymeric medium: interplay of self-propulsion, stickiness, and crowding. Soft matter\| PubMed ID: 36598025	2023
A polymer chain with dipolar active forces in connection to spatial organization of chromatin. Soft matter\| PubMed ID: 36723034	2023
Active dynamics of linear chains and rings in porous media. The Journal of chemical physics\| PubMed ID: 37403853	2023
Structure and dynamics of an active polymer chain inside a nanochannel grafted with polymers. Soft matter\| PubMed ID: 37497754	2023
Escape dynamics of a self-propelled nanorod from circular confinements with narrow openings. Soft matter\| PubMed ID: 37623699	2023
Decoding the dynamics of BCL9 triazole stapled peptide. Biophysical chemistry\| PubMed ID: 38335808	2024
A passive star polymer in a dense active bath: insights from computer simulations. Soft matter\| PubMed ID: 38700098	2024
Correction: A passive star polymer in a dense active bath: insights from computer simulations. Soft matter\| PubMed ID: 38888439	2024
Compound giant unilamellar vesicles as a bio-mimetic model for electrohydrodynamics of a nucleate cell. Soft matter\| PubMed ID: 39171512	2024
Osmolyte-induced conformational stabilization of a hydrophobic polymer. Physical chemistry chemical physics : PCCP\| PubMed ID: 39247939	2024
Exploring the Effect of Hydrocarbon Cross-Linkers on the Structure and Binding of Stapled p53 Peptides. Proteins\| PubMed ID: 39754310	2025
Demixing of an active-passive binary mixture through a two-dimensional elastic meshwork. Soft matter\| PubMed ID: 39996288	2025
Mechanism of deamination by mycobacterial deaminase selectively targeting mutagenic bases. Nucleic acids research\| PubMed ID: 40173018	2025
Target search of a polymer with an active head. Soft matter\| PubMed ID: 40474750	2025