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JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics

2.8K Views

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07:28 min

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October 19th, 2021

DOI :

10.3791/62796-v

October 19th, 2021

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2,786 Views

David Vanderwall¹, Poudel Suresh^1,2, Yingxue Fu², Ji-Hoon Cho², Timothy I. Shaw^2,3, Ashutosh Mishra², Anthony A. High², Junmin Peng^1,2, Yuxin Li^1,2

¹Departments of Structural Biology and Developmental Neurobiology, St. Jude Children’s Research Hospital, ²Center for Proteomics and Metabolomics, St. Jude Children’s Research Hospital, ³Department of Computational Biology, St. Jude Children’s Research Hospital

Chapitres

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Résumé

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Protein Co expression

Network Analysis

Co expression Clustering

Pathway Enrichment

PPI Module Detection

User friendly Interface

Interactive Visualization

Phosphoproteomics

Interactome Data

WGCNA Algorithm

Co expression Patterns

Pathway Ontology Enrichment Heatmap

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