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Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis

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03:47 min

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December 1st, 2023

DOI :

10.3791/200889-v

December 1st, 2023

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1Department of Biological Chemistry, Johns Hopkins University School of Medicine, 2Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine

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Keywords SCRAP
Noncoding RNA mRNA Interaction Analysis
Miniconda
Git
Home Brew Package Manager
Mamba
Conda Environment
FASTA
Annotation
MiRBase
UCSC Genome Browser
NCBI Genome Data Hub
Adapter File
Paired end
Single end
Pre mRNAs
TRNAs
RNA Cleaning
Reference Directory
MiRBase Abbreviation
Reference Genome

Da série

In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline
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