Spatiotemporal Analysis of Cytokinetic Events in Fission Yeast

Summary

The fission yeast, Schizosaccharomyces pombe is an excellent model system to study cytokinesis, the final stage in cell division. Here we describe a microscopy approach to analyze different cytokinetic events in live fission yeast cells.

Abstract

Cytokinesis, the final step in cell division is critical for maintaining genome integrity. Proper cytokinesis is important for cell differentiation and development. Cytokinesis involves a series of events that are well coordinated in time and space. Cytokinesis involves the formation of an actomyosin ring at the division site, followed by ring constriction, membrane furrow formation and extra cellular matrix remodeling. The fission yeast, Schizosaccharomyces pombe (S. pombe) is a well-studied model system that has revealed with substantial clarity the initial events in cytokinesis. However, we do not understand clearly how different cytokinetic events are coordinated spatiotemporally. To determine this, one needs to analyze the different cytokinetic events in great details in both time and in space. Here we describe a microscopy approach to examine different cytokinetic events in live cells. With this approach it is possible to time different cytokinetic events and determine the time of recruitment of different proteins during cytokinesis. In addition, we describe protocols to compare protein localization, and distribution at the site of cell division. This is a basic protocol to study cytokinesis in fission yeast and can also be used for other yeasts and fungal systems.

Introduction

Cytokinesis, the final step in cell division, is a complex process essential for proper differentiation, development, and survival of an organism. Cytokinesis involves multiple events that are organized to ensure successful cell separation while maintaining genomic integrity¹. Cytokinesis involves events where an actomyosin ring once assembled undergoes constriction, which is concurrent with membrane expansion and furrowing, and extracellular cellular matrix remodeling, finally followed by cell abscission^1,2,3. Improper organization of cytokinetic events can lead to cell separation and ploidy defects, and may cause diseases like cancer^4,5,6,7,8. The fundamental principles that enable organization of cytokinetic events are not well understood, thus leading to roadblocks in our understanding of the etiology of these diseases.

The fission yeast Schizosaccharomyces pombe (S. pombe) is an excellent model system to study cytokinesis due to the conserved nature of the proteins involved¹. In fission yeast, after actomyosin ring assembly, the ring enters a maturation/dwell phase where it does not constrict⁹. Maturation ends with initiation of actomyosin ring constriction, concurrent with membrane furrowing and septum ingression. Seminal work over the years have given us a fairly good understanding of actomyosin ring assembly in fission yeast^1,9,10. In some eukaryotes, including fission yeast, successful assembly of the actomyosin ring is not sufficient for membrane furrowing. In fission yeast, ring constriction alone does not provide sufficient force to overcome internal turgor pressure for furrow formation¹¹. A recent model indicates that this force is instead provided by septum ingression¹¹. In another model, the role of plasma membrane extension has been suggested to contribute to furrow formation^12,13. Ring constriction and membrane furrowing do not occur in Bgs1/Cps1 temperature sensitive mutant cps1-191, the major enzyme for primary septum formation^14,15. Cells lacking Bgs1 show defective primary septum and prolonged ring constriction^15,16. Bgs1 is recruited to the cell division site for septum ingression during maturation after actomyosin ring assembly^17,18. Similarly, during cellularization in Drosophila embryos, ring constriction is biphasic with a significantly slow initial constriction rate¹⁹, resembling the maturation phase observed in fission yeast. Biphasic ring constriction may slow down membrane furrowing to allow for sufficient membrane expansion²⁰ and modification of extracellular matrix. This suggests that after actomyosin ring assembly, ring constriction occurs efficiently only when the cell has satisfied the requirements for furrow formation. It is not well understood what conditions are required for actomyosin ring constriction after ring assembly, nor the molecular events that regulate this process. We have recently shown that following actomyosin ring assembly the small GTPase Cdc42 undergoes a unique spatiotemporal activation pattern²¹. This pattern is established by the unique localization pattern of the Cdc42 guanidine nucleotide exchange factors (GEFs) that activate Cdc42. The GEF Gef1 localizes to the assembled actomyosin ring and promotes onset of ring constriction and septum ingression, while Scd1 localizes to the furrowing membrane and promotes normal septum formation. We find that the Cdc42 activation pattern established by its GEFs lead to the regulation of distinct cytokinetic events.

To understand the molecular mechanism of events that eventually lead to cell separation following actomyosin ring assembly, one needs to follow the distinct cytokinetic events in time and space. In fission yeast, cytokinesis first involves the assembly of precursor nodes around the nucleus, which eventually recruit the type II myosin, the formin Cdc12, and other proteins required for actomyosin ring assembly. To time the distinct cytokinetic events and provide a frame of reference, the separation of spindle pole body markers (spindle formation) is considered as time 0²². The assembly of the actomyosin ring can be followed by monitoring over time the intensity of a fluorescently tagged actomyosin ring protein such as the type II myosin regulatory light chain Rlc1. Here we describe a microscopic approach to analyze different stages of cytokinesis over time.

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Protocol

1. Preparation of Sample

1. Grow fission yeast cells expressing the spindle pole body marker Sad1-mCherry²³ and type II myosin regulatory light chain Rlc1-Tomato²⁴ in YE liquid media at 32 °C for 8 generations.
   NOTE: For temperature sensitive mutants, grow cells at 25 °C. Grow cells to mid-log phase to an O.D.₆₀₀ of 0.5 in YE. For more on fission yeast growth conditions refer to the Fission yeast lab manual²⁵.
2. Prepare YE (or minimal) media with 0.6% agarose (Agarose based media show less fluorescent background in comparison to agar). To the melted media add 1 mM of ascorbic acid (vitamin C). The vitamin C quenches free radicals that are released due to photo-bleaching, thus minimizing photo-toxicity.
3. Pour 3 - 4 mL of the vitamin C laced melted media on to a glass bottomed culture dish. Let the media cool and solidify.
   NOTE: The thickness of the glass in the culture dish depends on the cover slip thickness suitable for the microscope. Here, use coverslip No. 1.5.
4. Gently raise the solidified media from the culture dish with the help of a sharp scalpel. Place a pipette tip between the media slab and the culture dish to prevent the slab from falling back into the dish (Figure 1).
5. Take 1 mL of freshly growing cells as described in 1.1 above. Spin the cells gently at 300 x g for 30 s. Discard the supernatant. Resuspend the cells in the small amount of residual media that remains in the tube after discarding the supernatant.
6. Load 2 - 5 µL of resuspended cell culture between the media slab and the glass bottom of the culture dish. The cells should be on the glass. The pipette tip placed between the media and the dish enables easy loading of the cell culture.
7. Very gently remove the pipette tip and place the media slab back in its original position on the culture dish. Make sure to avoid any air bubbles. If need be gently press out the air bubbles by sliding the back of a pipette tip on top of the media slab.
8. Let the cells sit in the culture dish for 30 min to one hour in the dark at the temperature at which microscopy will be performed. This is important to prevent any shock due to change in growth conditions for the cells.

2. Image Acquisition

1. Place a drop of oil on the outer side of the glass on the culture dish. Place the culture dish on an inverted microscope.
2. To minimize auto fluorescence of YE media use a GFP filter with a narrow wavelength range (520 - 535 nm).
3. Focus on the medial plane of the cells and ensure that they are well spaced and not too crowded. Make sure to start image acquisition of the cells in the suitable stage of the cell cycle. For this experiment, follow cells from late G2.
4. Program the image acquisition software to take GFP, RFP and DIC images of the cells.
   1. For this experiment use 100 ms exposure time for DIC and 75 ms exposure time for GFP and RFP filters. The exposure time depends on the settings of the microscope, the protein under study and the duration of the experiment. For the given microscope settings, use 50% laser power.
   2. To capture images in 3 dimensions, program the image acquisition software for Z-scale imaging. Use a step size of 0.4 µm and a distance of 3.0 µm (half of total z) around the central focus point of the cells. This leads to the capture of 16 Z-frames per time point with a total Z distance of 6 µm.
      NOTE: Z-series image acquisition allows the capture of the spindle pole bodies.
5. Take images every 2 min. Change the exposure time according to the requirements of the experiment. The exposure time can also be changed according to the protein of interest and signal strength. However, note that shorter intervals or longer exposure time increase photo-toxicity due to bleaching and hence cells can be followed only for a short time.
6. Acquire images till the cells physically separate as observed by the DIC images, or program the software to stop acquisition after 90 min.

3. Image Analysis

1. Temporal analysis of cytokinetic events
   1. Using the image acquisition software make projections of the Z-frames for each time-point. Make different files for each wavelength of image acquired.
   2. Export this projection time-point series as a .tiff file.
   3. Analyze the images using ImageJ software. Open the image series for any one of the wavelengths.
   4. Select a cell to be studied. Double click on the line option of toolbar. This will open another window to adjust line width. Adjust the line width to correspond to the cell width. For a WT cell this is about 40 - 50 pixels. Draw a line along the long axis of the cell of interest.
   5. Click on Analyze>Tools>ROI manager and click on add. This will add the selected line to the ROI window for use later. Do not close this window.
   6. Click on the image of interest and select Edit>Selection>Straighten. This will open another window. Check "Process entire stack". This will straighten the cell horizontally.
   7. Click on Image>Transform>Rotate 90 Degrees Right. This image is now straightened vertically.
   8. Click on Image>Stacks>Make Montage. This will open a window to assign the number of rows and columns for the stack, the scale factor for the image size, the first and last slice (frame) for the montage and the frame increment for the montage. Check label slices and hit enter.
   9. As a window with a montage of the cell of interest is shown, open the image series for the other wavelength.
   10. Click on the line identifier on ROI manager. This will select the same cell on the second image file. Repeat steps 3.1.6 - 3.1.8. This will open a montage of the second image.
   11. On the image with the spindle pole body marker Sad1-mCherry, look for onset of separation of the spindle pole body marker and mark that time point as time 0.
   12. Follow the Rlc1-Tomato signal on the image over time and look for the signal that appears as a distinct line as opposed to patches of Rlc1-Tomato. This time-point marks completion of actomyosin ring assembly/start of maturation phase.
   13. Next scroll through the movie over time to determine when the Rlc1-Tomato ring starts to decrease in size. This is marked as the end of maturation phase/onset of ring constriction.
   14. Follow the Rlc1-Tomato signal over time throughout constriction until it appears as a dot in the middle of the cell axis. This is marked as the end of ring constriction/end of septum ingression.
   15. Following the montage of DIC images, determine the final cell separation. Record the time point when the cell physically separates.
   16. For spindle pole body separation measure the distance between the two spindle pole bodies over time using the line tool in ImageJ. Plot the distance in spindle pole body over time.
   17. Record the different time-points for the different cytokinetic events to calculate the duration of each cytokinetic phase and compare with spindle pole body separation over time.
2. Spatial analysis of cytokinetic events
   1. Select a cell with a visible actomyosin ring. Double click on the line option of ImageJ toolbar. This will open another window to adjust line width. Adjust the line width to correspond to the ring thickness (15 - 20 pixels). Draw a line along the ring taking care to ensure the entire thickness of the ring is included.
   2. Click on Analyze>Tools>ROI manager and click on add. This will add the selected line to the ROI window for use later. Do not close this window.
   3. Click on the image of interest and select Edit>Selection>Straighten. This will open another window. Check "Process entire stack". This will straighten the ring horizontally.
   4. Reset the intensity of the brightest plane in the straightened z-stack (from 3.1.6) using Image>Adjust>Brightness/Contrast>Reset.
   5. Click on the tab Stk>3D Project. This will open a dialog box. Change the projection method to Brightest Point and the Slice spacing to 2 or 3 pixels. Finally, change axis of rotation to X or Y-axis (this will change depending upon the desired viewing angle), click interpolate and click OK to generate a 3D projection of the image. Use the scroll bar beneath the image to rotate the image.
   6. Open the image series for the other wavelength using ImageJ.
   7. Click on the line identifier on ROI manager. This will select the same ring on the second image file. Repeat steps 4.2.4 and 4.2.5. This will open a 3 dimensional ring in the image with the other wavelength.
   8. With the both 3D image rings open, click on Image>Color>Merge Channels. This will open a box. Select each image from the drop down menu for the corresponding color desired and click OK. This will open a composite of both the images at different wavelengths.
   9. Compare the localization of different markers with regards to localization at the cytokinetic ring or ingressing membrane. Rlc1-GFP is a marker for the cytokinetic ring. Proteins co-localizing with Rlc1-GFP localize to the ring while proteins localizing behind Rlc1-GFP signal localize to the ingressing membrane.
      NOTE: The protein of interest needs to be of a different fluorophore than that of the ring marker.
   10. Generate 3 dimensional rings during different stages of cytokinesis to compare the spatial localization of the proteins all through cytokinesis.
3. Analysis of protein distribution at cytokinetic ring
   1. To compare and analyze distribution of proteins along the ring measure the co-efficient of variance of protein distribution. A high co-efficient of variance indicates uneven distribution of proteins along the division site and suggests improper ring assembly, maturation or septum formation, depending on which phase is imaged or analyzed.
   2. Using 3 dimensional reconstructed cytokinetic ring (from 3.2.2), divide the image into at least 4 quadrants such that a quarter of the ring appears in each quadrant. For this use the line tool to draw perpendicular lines on the image. After each line click Image>Overlay>Add selection or use short cut Ctrl+B.
   3. Go to Analyze>Set measurement. Select mean gray value in the box that opens. Click OK.
   4. Using the lines drawn above as guides draw a rectangle to define each quadrant using the rectangle tool.
   5. To measure the Mean intensity of each quadrant, click on Analyze>Measure or use the short cut Ctrl+M.
   6. Record the mean gray value for all four quadrants (MG₁-MG₄).
   7. Select a small area in each quadrant outside the ring as background selection.
   8. Measure mean gray value for Background selection for all four quadrants (BG₁-BG₄).
   9. li>For background subtraction for each quadrant use the following formula- MG₁-Average(BG₁:BG₄)= Intensity of ring in each quadrant (IRQ). At this stage there are 4 IRQ values, one for each quadrant.
   10. Next calculate the coefficient of variance for each ring using the following formula- Standard deviation (IRQ₁:IRQ₄)/Average(IRQ₁:IRQ₄). Calculate average Co-efficient of Variance for each strain and compare to the other strains.
       NOTE: A statistically significant increase in co-efficient of variance in a strain compared to controls indicates uneven protein distribution/delivery along the division site at that stage of cytokinesis.

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Results

Fission yeast cells expressing the ring marker, Rlc1-GFP (green, Figure 2) and spindle pole body marker Sad1-mCherry (red, Figure 2) were imaged during cytokinesis. Onset of spindle pole body marker (white arrow, Figures 2A, B) is considered as time 0. Rlc1-GFP signal appears at time -4 min with reference to spindle pole body separation (red arrow, Figures 2A, 2B). Rlc1-GFP signal forms a continuous ring 10 min post spindle pole body sepa...

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Discussion

Here we have described a protocol to study cytokinetic events in fission yeast in a temporal manner. The protocol described here provides temporal resolution of different cytokinetic events with reference to each other; timing of protein recruitment or loss with reference to cytokinetic phase; structure of the ring throughout the different phases of cytokinesis; and the progression of cytokinesis with reference to mitosis. With this protocol it is possible to precisely define the cytokinetic phase that may be altered in ...

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Materials

Name	Company	Catalog Number	Comments
Yeast extract media	Sunrise Science Products	YES 225	0.5% w/v yeast extract, 3% w/v glucose, 225mg/L adenine, histidine, leucine, uracil, and lysine
Agarose	SeaKem LE agarose, Lonza	50001
Ascorbic acid	Sigma-Aldrich	A4544
Glass Bottomed culture dish	MatTek Corporation	P35G-1.5-14-C	Coverslip No. 1.5 was used. This will vary as per the microscope specifications used.
VT-Hawk 2D array laser scanning confocal microscopy system	Visitech International, UK		with an Olympus IX-83 inverted microscope with a 100X / numerical aperture 1.49 UAPO lens (Olympus) and EM-CCD digital camera (Hamamatsu).
ImageJ	NIH		Image analysis software