Name: Processing the Single-Cell Shear Assay Imaging Data
Uploaded: 2023-05-19T13:30:00
Description: Watch this Scientific Journal Video about Processing the Single-Cell Shear Assay Imaging Data at JoVE.com

processing the single-cell shear assay imaging data

एकल-कोशिका यांत्रिकी की मात्रा निर्धारित करके लक्षित कैंसर निदान को बढ़ाना

Studying the biophysical differences between cancerous and non-cancerous cells allows for novel diagnostic and therapeutic opportunities1. Understanding how differences in biomechanics/mechanobiology contribute to tumor progression and treatment resistance will reveal new avenues for targeted therapy and early diagnosis2.
While it is known that cancer cell mechanical properties differ from normal cells (e.g., viscoelasticity of the plasma membrane and nuclear envelope)3,4,5, robust and reproducible methods for measuring these properties in live cells are lacking6. The shear assay method is used to quantify the mechanical properties of cells by subjecting single cells to fluid shear stress and analyzing their individual responses and resistance to the applied stress3,4,5,7,8,9. Although several methods and techniques have been used to characterize the mechanical properties of single cells, these tend to affect cell material properties by i) perforating/damaging the cell membrane due to the indentation depth, complex tip geometries, or substrate stiffening associated with atomic force microscopy (AFM)10,11, ii) inducing cellular photodamage during optical trapping12,13, or iii) inducing complex stress states associated with micropipette aspiration14,15. These external effects are associated with significant uncertainties in the accuracy of cell viscoelasticity measurements6,16,17.
To address these limitations, the shear assay method described here provides a highly controllable and simple approach to simulate physiological flow in the body without affecting cellular material properties in the process. Fluid shear stresses in this assay represent mechanical stresses experienced by cells in the body either by fluids within the tumor interstitium or in the blood during circulation18,19,20. Further, these fluid stresses promote various malignant behaviors in cancer cells, including progression, migration, metastasis, and cell death19,21,22,23&#160;which vary between tumorigenic and non-tumorigenic cells. Moreover, the altered mechanical features of cancer cells (i.e., they are often &#34;softer&#34; than normal cells found within the same organ) allow them to persist in hostile tumor microenvironments, invade surrounding normal tissues, and metastasize to distant sites24,25,26. By creating a pseudo-biological environment where cells experience physiological levels of fluid shear stress, a process that is physiologically relevant and not destructive to the cell is achieved. The cellular responses to these applied fluid shear stresses allow us to characterize cell mechanical properties.
This paper provides a shear assay protocol for the extensive study of the mechanical properties and behavior of cancerous and non-cancerous cells under applied shear stress. Cells respond to external forces in an elastic and viscous manner and can therefore be idealized as a viscoelastic material3. This technique is categorized into: (i) cell culture of dispersed single cells, (ii) controlled application of fluid shear stress, (iii) in situ imaging and observation of cellular behavior (including resistance to stress and deformation), (iv) strain analysis of cells to determine the extent of deformation, and (v) characterization of the viscoelastic properties of single cells. By interrogating these mechanical properties and behaviors, complex cellular mechanobiology can be distilled to quantifiable data. A protocol outlining this method allows for the cataloging of and comparison between various malignant and non-malignant cell types. Quantifying these differences has the potential to establish diagnostic and therapeutic biomarkers.

लेखक स्पॉटलाइट: एकल सेल सामग्री गुणों के निर्धारण के लिए कतरनी परख प्रोटोकॉल  

एकल-सेल सामग्री गुणों के निर्धारण के लिए कतरनी परख प्रोटोकॉल

The physical hallmarks of cancer are relatively new and exciting topics in cancer research. Our research seeks to specifically characterize the mechanical properties of both cancers and non-cancer cells to better understand the physical mechanisms by which cancer cells survive shear forces in the body and invade the immune system. Recent development in my period of research is the use of microfluidic devices and high-throughput techniques to understudy in a larger scale, cellular deformability and the viscoelastic properties of cells, and also in the identification of novel biomarkers such as the regulation of cytoskeletal proteins and extracellular matrix proteins for early cancer diagnosis.Current experimental challenges involved in this field are the complexity of the tumor microenvironment, scaling throughput, clinical translation, standardization and reproducibility, and integration of multimodal data. So, some of the significant findings I've established in this field from my past research and from my current research is that cancer cells can be distinguished from normal cells based on their responses to mechanical stressors. And the extent to which resist mechanical stressors is dependent on structural integrity, which is dictated to a reasonable extent by the presence of cytoskeletal proteins like the filamentous actin and other structural proteins within the cell.Our protocol offers a simple, repeatable, and non-destructive approach to characterize cultured cells mechanically. This is in contrast to other techniques like AFM and optical tweezers, which require a certain level of technical expertise in order to perform an experiment in a relatively low throughput. Within the use of the shear acid technique, will greatly advance the single cell mechanical characterization, and will also aid in many different cross-sectional areas such as rare disease diagnosis, personalized diagnosis and care, and monitoring single-cell drug interactions.

Watch this Scientific Journal Video about Processing the Single-Cell Shear Assay Imaging Data at JoVE.com

Processing the Single-Cell Shear Assay Imaging Data  

एकल-सेल कतरनी परख इमेजिंग डेटा को संसाधित करना

डीआईसी सॉफ्टवेयर का उपयोग करके डिजिटल छवि सहसंबंध, या डीआईसी करने के लिए, सरासर परख रिकॉर्डिंग से प्राप्त छवियों को डीआईसी सॉफ्टवेयर में आयात करें, अधिमानतः टीआईएफ फ़ाइल प्रारूप में। एक अनुकूलित सहसंबंध के लिए, अंतर विकल्प के योग का चयन करें जो अंतिम छवि के संबंध में एक नई छवि के विरूपण को ट्रैक करता है। 20 पिक्सेल के चरण आकार के साथ 31 x 31 पिक्सेल के उपसमुच्चय आकार का चयन करें.एक चुने हुए एकल सेल के लिए रुचि के क्षेत्र को मैप करें। एक अनियमित आकार के लिए, जैसे कि सेल, सेल की ज्यामिति को मैप करने के लिए एक बहुभुज मुखौटा का उपयोग करें। विरूपण को ट्रैक करने के लिए मैप किए गए सेल के भीतर मनमाने बिंदुओं का चयन करें।मैपिंग के बाद, कोशिका पर विशिष्ट बिंदुओं का चयन करें, जैसे नाभिक या साइटोप्लाज्म, जिसका विश्लेषण स्ट्रेन गेज जोड़ें पर क्लिक करके और परिभाषित सेलुलर सीमा के भीतर बिंदुओं पर अलग-अलग तनाव गेज तैयार करके किया जा सकता है। तनाव प्रसंस्करण शुरू करने और तनाव बनाम समय डेटा प्राप्त करने के लिए स्टार्ट पर क्लिक करें। इस सहसंबंध के परिणामस्वरूप उत्पन्न तनाव समय प्लॉट को MATLAB में आगे के विश्लेषण के लिए CSV फ़ाइल के रूप में निर्यात किया जा सकता है।जेनरेट किए गए स्ट्रेन टाइम प्लॉट पर डबल क्लिक या राइट क्लिक करें और डेटा निर्यात करें का चयन करें। सरासर परख रिकॉर्डिंग से निकाले गए छवि फ्रेम के डीआईसी ने सफलतापूर्वक रेंगने वाले तनाव प्रतिक्रिया के साथ संगत तनाव समय डेटा का उत्पादन किया। सरासर परख तकनीक का उपयोग करने वाले अध्ययनों के परिणामों से पता चला है कि कैंसर कोशिकाएं आम तौर पर सामान्य कोशिकाओं की तुलना में अधिक यांत्रिक रूप से अनुरूप और कम चिपचिपी थीं।कोशिकाओं की कठोरता और चिपचिपाहट को एक सामान्य कोशिका अवस्था से थोड़ा मेटास्टैटिक अवस्था में और अंत में अत्यधिक मेटास्टैटिक स्थिति में कैंसर की प्रगति में वृद्धि के साथ कम देखा गया। हालांकि, इन सेल प्रकारों के लिए विश्राम समय ने कोई महत्वपूर्ण बदलाव नहीं दिखाया।

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