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Peak Calling and Annotation in SCRAP for Small Noncoding RNA: Target RNA Interaction Studies

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02:13 min

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December 1st, 2023

DOI :

10.3791/200890-v

December 1st, 2023

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53 Views

Sreenivas Eadara¹, Xinbei Li¹, Emily A. Eiss¹, Mollie K. Meffert^1,2

¹Department of Biological Chemistry, Johns Hopkins University School of Medicine, ²Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine

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Peak calling directory path to sample folders Adapter file path to adapter fasta Min reads 10 Min samples 2 Require same family True Reference dir path to reference directory Mirbase abbr hsa Genome abbr hg38 Peak file path to resulting peaks bed Bam file path to merged bam Sorted bam path to sorted bam Indexed bam path to sorted bam bai

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