Name: transient expression of proteins by hydrodynamic gene delivery in mice
Uploaded: 2014-05-05T16:30:00
Description: Watch this Scientific Journal Video about Transient Expression of Proteins by Hydrodynamic Gene Delivery in Mice at JoVE.com

Wij danken Xia Liu (Regeneron Pharmaceuticals) voor initieel onderwijs ons de HGD techniek en Dr Russell Thomson (Albert Einstein College of Medicine) zijn continue begeleiding in de verschillende aspecten van de technologie. Dit werk werd gefinancierd door Hunter College, CUNY opstarten fondsen en NSF Brood award IOS-1249166. Wij danken de NYULMC Histopathology Core NYUCI Support Grant, NIH / NCI 5 P30CA16087-31 voor histologie op de muis levers.

Alle experimenten die hier beschreven werden goedgekeurd door de Institutional Animal Care en gebruik Comite van Hunter College, City University van New York. 1. Bereiding van endotoxinen plasmide-DNA <ol><li> Sla een kolonie van bacteriën die het gen van belang in een zoogdierlijke expressievector van een vers uitgestreken selectieve plaat. </li><li> Volg de aanbevelingen in het handboek van een commercieel verkrijgbare endotoxinevrij plasmidezuivering kit voor het kweken en oogsten van ...

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	<li>Liu, F., Song, Y., Liu, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hydrodynamics-based+transfection+in+animals+by+systemic+administration+of+plasmid+DNA.">Hydrodynamics-based transfection in animals by systemic administration of plasmid DNA.</a> Gene Ther. 6, 1258-1266 (1999).</li><li>Zhang, G., Budker, V., Wolff, J. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=High+levels+of+foreign+gene+expression+in+hepatocytes+after+tail+vein+injections+of+naked+plasmid+DNA.">High levels of foreign gene expression in hepatocytes after tail vein injections of naked plasmid DNA.</a> Hum Gene Ther. 10, 1735-1737 (1999).</li><li>Miao, C. H., Thompson, A. 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A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Gene+therapy+progress+and+prospects:+hydrodynamic+gene+delivery.">Gene therapy progress and prospects: hydrodynamic gene delivery.</a> Gene Ther. 14, 99-107 (2007).</li><li>Kobayashi, N., Nishikawa, M., Takakura, Y. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+hydrodynamics-based+procedure+for+controlling+the+pharmacokinetics+of+gene+medicines+at+whole+body,+organ+and+cellular+levels.">The hydrodynamics-based procedure for controlling the pharmacokinetics of gene medicines at whole body, organ and cellular levels.</a> Adv Drug Deliv Rev. 57, 713-731 (2005).</li><li>Al-Dosari, M. S., Knapp, J. E., Liu, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hydrodynamic+delivery.">Hydrodynamic delivery.</a> Adv Genet. 54, 65-82 (2005).</li><li>Bell, J. B., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Preferential+delivery+of+the+Sleeping+Beauty+transposon+system+to+livers+of+mice+by+hydrodynamic+injection.">Preferential delivery of the Sleeping Beauty transposon system to livers of mice by hydrodynamic injection.</a> Nat Protoc. 2, 3153-3165 (2007).</li><li>Osorio, F. G., de la Rosa, J., Freije, J. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Luminescence-based+in+vivo+monitoring+of+NF-kappaB+activity+through+a+gene+delivery+approach.">Luminescence-based in vivo monitoring of NF-kappaB activity through a gene delivery approach.</a> Cell Commun Signal. 11, (2013).</li><li>Knapp, J. E., Liu, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hydrodynamic+delivery+of+DNA.">Hydrodynamic delivery of DNA.</a> Methods Mol Biol. 245, 245-250 (2004).</li><li>Yang, J., Chen, S., Huang, L., Michalopoulos, G. K., Liu, Y. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Sustained+expression+of+naked+plasmid+DNA+encoding+hepatocyte+growth+factor+in+mice+promotes+liver+and+overall+body+growth.">Sustained expression of naked plasmid DNA encoding hepatocyte growth factor in mice promotes liver and overall body growth.</a> Hepatology. 33, 848-859 (2001).</li><li>Maruyama, H., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=High-level+expression+of+naked+DNA+delivered+to+rat+liver+via+tail+vein+injection.">High-level expression of naked DNA delivered to rat liver via tail vein injection.</a> J Gene Med. 4, 333-341 (2002).</li><li>Hen, G., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Expression+of+foreign+genes+in+chicks+by+hydrodynamics-based+naked+plasmid+transfer+in+vivo.">Expression of foreign genes in chicks by hydrodynamics-based naked plasmid transfer in vivo.</a> Domestic animal endocrinology. 30, 135-143 (2006).</li><li>Eastman, S. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Development+of+catheter-based+procedures+for+transducing+the+isolated+rabbit+liver+with+plasmid+DNA.">Development of catheter-based procedures for transducing the isolated rabbit liver with plasmid DNA.</a> Hum Gene Ther. 13, 2065-2077 (2002).</li><li>Yoshino, H., Hashizume, K., Kobayashi, E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Naked+plasmid+DNA+transfer+to+the+porcine+liver+using+rapid+injection+with+large+volume.">Naked plasmid DNA transfer to the porcine liver using rapid injection with large volume.</a> Gene Ther. 13, 1696-1702 (2006).</li><li>Vanden Bossche, P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Some+general+aspects+of+the+distribution+and+epidemiology+of+bovine+trypanosomosis+in+southern+Africa.">Some general aspects of the distribution and epidemiology of bovine trypanosomosis in southern Africa.</a> Int J Parasitol. 31, 592-598 (2001).</li><li>Fevre, E. 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Wanneer correct uitgevoerd, HGD is een opmerkelijk veilige en effectieve manier van transgene levering. De kritische stappen succesvolle dysplasie zijn: 1) het leveren van de juiste hoeveelheid DNA in een groot volume zoutoplossing voertuig 2) in de staartader van de muis 3) in minder dan 8 seconden. Hoewel het proces van de injectie zelf onmiskenbaar vereist enige handigheid, het succes van deze zes-tweede procedure ligt vaak in een zorgvuldige voorbereiding van het experiment. De hoeveelhe...

Sinds de eerste beschrijving van Liu et al.. En Zhang et al.., Hydrodynamische genaflevering (HGD) is uitgegroeid tot een waardevol instrument voor het bestuderen van gen-functie in knaagdier modelsystemen 1, 2. De techniek omvat de snelle injectie (5-7 seconden) van een groot volume (8-12% lichaamsgewicht) oplossing in de staartader van muizen om de opname van plasmide DNA door de cellen van doelorganen 1, 2 vergemakkelijken. Deze omstandigheden leiden tot sterke genexpressie in de lever en minder genexpressie in de nieren, milt, long en hart. Injectie van 10 ug pCMV-lacZ plasmide transfecteren maar liefst 40% van hepatocyten, waardoor dysplasie de meest efficiënte, niet-virale, in vivo gentherapie methode tot heden 1. In tegenstelling tot de virale dragers, pDNA is gemakkelijk te bereiden, niet een immuunrespons in het knaagdier gastheer 3 uitlokken en geen risico voor de gezondheid kunnen opleveren doordat recombineren met eindogenous virussen. Bovendien, omdat de DNA-moleculen door dysplasie geleverde niet verpakking nodig is deze werkwijze geschikt voor de levering van bacteriële kunstmatige chromosomen (BAC) zo groot als 150 kb 4. Andere soorten moleculen die door een hydrodynamisch werkwijze zijn geleverd omvatten RNA 5-10, morpholinos 11, eiwitten 12, 13 en andere kleine moleculen 12, 14. De voor-en nadelen van HGD opzichte van andere aflevering methoden zijn in uitstekende recensies besproken in de literatuur 15-20 en een aantal auteurs hebben een gedetailleerde beschrijving van de procedure 21-23. Introductie van transgenen in muizen door HGD is veilig en effectief 1-3, 24 en de methode is gebruikt bij ratten met een vergelijkbaar succes 25. Bij bepaalde wijzigingen, proof-of-concept-experimenten zijn uitgevoerd bij kippen 26, rab uitgevoerdDe bits 27 en 28 varkens, hoewel de in vivo toepassing van deze techniek in grotere dieren blijft een uitdaging. Deze meetmethode, een gemeenschappelijke beperking is dat veel van de beschikbare zoogdierlijke expressievectoren niet de componenten tot een blijvende, hoge genexpressie. Met een pCMV-Luc plasmide genexpressie in de doelorganen is merkbaar vanaf tien minuten na HGD echter de aanvankelijk, hoog expressieniveau daalt scherp in de eerste week na injectie 1. Langdurige transgenexpressie is mogelijk, afhankelijk van de promotor en intron gebruikt in plasmide design 3, 24 echter, het onderhoud van high-level genexpressie vereist vaak herhaalde injecties. Daarom kan dysplasie minder geschikt chronische ziekten die het gevolg zijn van langdurige blootstelling aan schadelijke eiwitten of producten bestuderen. Met deze beperkingen, HGD is een uitzonderlijk krachtig hulpmiddel voor het bestuderen van de potentieel rol van een gen en het effect ervan mutanten in vivo, evenals de therapeutische effecten en regulatie van eiwitten en de vaststelling van diermodellen van de ziekte (zie voor 15). Bijvoorbeeld kan dysplasie worden gebruikt om functie aan domeinen en aminozuren van eiwitten door afzonderlijk introduceren verschillende genconstructen in muizen die de respectieve genen uitgeschakeld. Verder kan deze techniek worden gebruikt in elke muizenstam. Dit protocol beschrijft HGD in muizen met een focus op de technische aspecten die nodig zijn om een ​​succesvolle transfectie bereiken: de juiste naald inbrengen in de ader, injectie volume en de snelheid van levering. De toepassing van deze methode wordt gedemonstreerd in een muismodel van Afrikaanse trypanosomiasis, een fatale ziekte bij mensen en dieren 29, 30. Terwijl verschillende soorten trypanosomen veroorzaken ziekte bij vee, kunnen de meeste niet ziekte veroorzaken bij de mens als gevolg van immuuncomplexen aangeboren blood genoemd trypanosome lytische factoren (TLFs) 29, 31, 32. Deze porievormende, high-density lipoproteïnen (HDL) bevat twee unieke, primaat-eiwitten. HPR, het ligand, die de opname van TLFs in trypanosomen vergemakkelijkt en APOL-I, de lytische component 31, 33-38 Trypanosoma brucei rhodesiense is in staat om mensen te besmetten als gevolg van de expressie van een serum-resistentie geassocieerde eiwit (SRA) dat bindt aan en neutraliseert de menselijke APOL-I 34, 39. Baviaan TLF wordt niet geneutraliseerd door SRA vanwege de uiteenlopende APOL-I-eiwit 40. Zoals eerder gemeld, met een zoogdierexpressievector (pRG977), transgene expressie van baviaan TLF componenten in muizen bescherming biedt tegen humane infecties trypanosomen 40. De representatieve hier gepresenteerde gegevens demonstreren hoe hydrodynamische gentherapie worden toegepast om de therapeutische werking van een eiwit te bestuderen.

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			<td height="21" style="height:21px;width:216px;">Alcohol Prep Wipe</td>
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			<td height="21" style="height:21px;width:216px;">AST kit, Amplite Colorimetric</td>
			<td style="width:113px;">AAT Bioquest</td>
			<td align="right" style="width:119px;">13801</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Conical Tube, 50 ml</td>
			<td style="width:113px;">BD Falcon</td>
			<td align="right" style="width:119px;">352070</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">EndoFree Plasmid Maxi Kit</td>
			<td style="width:113px;">Qiagen</td>
			<td align="right" style="width:119px;">12362</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">KimWipes</td>
			<td style="width:113px;">KIMTECH</td>
			<td align="right" style="width:119px;">34120</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="41">
			<td height="41" style="height:41px;width:216px;">Mouse Tail Illuminator</td>
			<td style="width:113px;">Braintree Scientific</td>
			<td style="width:119px;">MTI RST</td>
			<td style="width:167px;">Or equivalent</td>
		</tr>
		<tr height="41">
			<td height="41" style="height:41px;width:216px;">Needle, 20 Gx 1 (0.9mmx25mm)</td>
			<td style="width:113px;">BD</td>
			<td align="right" style="width:119px;">305175</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="41">
			<td height="41" style="height:41px;width:216px;">Needle, 27 Gx 1/2 (0.9mmx25mm)</td>
			<td style="width:113px;">BD</td>
			<td align="right" style="width:119px;">305109</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="61">
			<td height="61" style="height:61px;width:216px;">pRG977 (mammalian expression vector)</td>
			<td style="width:113px;">Regeneron Pharmaceuticals</td>
			<td style="width:119px;"></td>
			<td style="width:167px;">Material Transfer Agreement required</td>
		</tr>
		<tr height="41">
			<td height="41" style="height:41px;width:216px;">Sodium Chloride, 0.9% INJ USP 10 ml, Hospira&#160;</td>
			<td style="width:113px;">Fisher</td>
			<td style="width:119px;">NC9054335</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="61">
			<td height="61" style="height:61px;width:216px;">Syringe, 3ml, Luer-Lok Tip</td>
			<td style="width:113px;">BD</td>
			<td align="right" style="width:119px;">309657</td>
			<td style="width:167px;">Luer Lock necessary to withstand pressure from HGD</td>
		</tr>
	</tbody>
</table>

transient expression of proteins by hydrodynamic gene delivery in mice

Efficiënte expressie van transgenen in vivo is van cruciaal belang bij het ​​bestuderen van genfunctie en het ontwikkelen van behandelingen voor ziekten. In de afgelopen jaren heeft hydrodynamische genaflevering (HGD) ontpopt als een eenvoudige, snelle, veilige en effectieve methode voor het leveren van transgenen in knaagdieren. Deze techniek is gebaseerd op de kracht die door de snelle injectie van een groot volume van fysiologische oplossing om de permeabiliteit van celmembranen van geperfundeerde organen te vergroten en daarmee leveren van DNA in cellen. Een van de belangrijkste voordelen van dysplasie is de mogelijkheid om transgenen te introduceren in zoogdiercellen met naakt plasmide DNA (pDNA). Het introduceren van een exogeen gen met behulp van een plasmide is minimaal moeizaam, zeer efficiënte en, in tegenstelling tot virale dragers, opmerkelijk veilig. HGD werd aanvankelijk gebruikt om genen in muizen, wordt nu gebruikt om een ​​breed scala van stoffen, waaronder oligonucleotiden, kunstmatige chromosomen, RNA, eiwitten en kleine moleculen in muizen, ratten leverenen, in beperkte mate, andere dieren. Dit protocol beschrijft HGD in muizen en richt zich op drie belangrijke aspecten van de methode die kritisch zijn voor het uitvoeren van de procedure met succes zijn: correct inbrengen van de naald in de ader, het volume van de injectie en de snelheid van levering. Voorbeelden worden gegeven aan de toepassing van deze werkwijze tonen voor de transiënte expressie van twee genen die uitgescheiden, primaat-eiwitten coderen, apolipoproteine ​​LI (APOL-I) en haptoglobine-verwant eiwit (HPR).

Correcte plaatsing van de naald in de staartader van de muis (zoals getoond in figuur 1) is een voorwaarde voor het succesvol leveren van een transgen door hydrodynamica gebaseerde transfectie. Vaak is de meest uitdagende gedeelte van de techniek is echter de retentie van de naald in de staartader zonder beweging, zodat het gehele volume van de injectie binnen 6-8 s kan worden geleverd. Kleine fouten tijdens het injectieproces kan resulteren in sterk verminderde efficiëntie transfectie en eiwitexpressi...

Watch this Scientific Journal Video about Transient Expression of Proteins by Hydrodynamic Gene Delivery in Mice at JoVE.com

Transient Expression of Proteins by Hydrodynamic Gene Delivery in Mice

In vivo transfectie van naakt DNA door hydrodynamische gen delivery introduceert genen in het weefsel van een dier met minimale ontstekingsreactie. Voldoende hoeveelheden genproduct zodanig dat gen functie en regulering en eiwitstructuur en functie kunnen worden geanalyseerd gegenereerd.

Voorbijgaande expressie van eiwitten door Hydrodynamic Gene Levering in Muizen

Efficient expression of transgenes in vivo is of critical importance in studying gene function and developing treatments for diseases. Over the past ...

transient-expression-of-proteins-by-hydrodynamic-gene-delivery-in-mice

Research

JoVE Journal

Biology

The Preparation of Primary Hematopoietic Cell Cultures From Murine Bone Marrow for Electroporation

It is becoming increasingly apparent that electroporation is the most effective way to introduce plasmid DNA or siRNA into primary cells. The Gene Pulser MXcell  electroporation system and Gene Pulser  electroporation buffer were specifically developed to transfect nucleic acids into mammalian cells and difficult-to-transfect cells, such as primary and stem cells.This video demonstrates how to establish primary hematopoietic cell cultures from murine bone marrow, and then prepare them for electroporation in the MXcell system. We begin by isolating femur and tibia. Bone marrow from both femur and tibia are then harvested and cultures are established. Cultured bone marrow cells are then transfected and analyzed.

This procedure describes how to establish primary hematopoietic cell cultures from murine bone marrow and is followed by transfection using the Gene Pulser MXCell electroporation system.

De vervaardiging van primaire hematopoietische cellen culturen uit Murine Bone Marrow voor Elektroporatie

It is becoming increasingly apparent that electroporation is the most effective way to introduce plasmid DNA or siRNA into primary cells. The Gene Pulser ...

Staining of Proteins in Gels with Coomassie G-250 without Organic Solvent and Acetic Acid

In classical protein staining protocols using Coomassie Brilliant Blue (CBB), solutions with high contents of toxic and flammable organic solvents (Methanol, Ethanol or 2-Propanol) and acetic acid are used for fixation, staining and destaining of proteins in a gel after SDS-PAGE. To speed up the procedure, heating the staining solution in the microwave oven for a short time is frequently used. This usually results in evaporation of toxic or hazardous Methanol, Ethanol or 2-Propanol and a strong smell of acetic acid in the lab which should be avoided due to safety considerations. In a protocol originally published in two patent applications by E.M. Wondrak (US2001046709 (A1), US6319720 (B1)), an alternative composition of the staining solution is described in which no organic solvent or acid is used. The CBB is dissolved in bidistilled water (60-80mg of CBB G-250 per liter) and 35 mM HCl is added as the only other compound in the staining solution. The CBB staning of the gel is done after SDS-PAGE and thorough washing of the gel in bidistilled water. By heating the gel during the washing and staining steps, the process can be finished faster and no toxic or hazardous compunds are evaporating. The staining of proteins occurs already within 1 minute after heating the gel in staining solution and is fully developed after 15-30 min with a slightly blue background that is destained completely by prolonged washing of the stained gel in bidistilled water, without affecting the stained protein bands.

A short protocol for protein staining with Coomassie Brilliant Blue (CBB) G-250 in polyacrylamide gels is described without using organic solvents or acetic acid as in the classical staining procedures with CBB.

Kleuring van eiwitten in Gels met Coomassie G-250 zonder organisch oplosmiddel en azijnzuur

In classical protein staining protocols using Coomassie Brilliant Blue (CBB), solutions with high contents of toxic and flammable organic solvents ...

Using the Gene Pulser MXcell Electroporation System to Transfect Primary Cells with High Efficiency

It is becoming increasingly apparent that electroporation is the most effective way to introduce plasmid DNA or siRNA into primary cells. The Gene Pulser MXcell electroporation system and Gene Pulser electroporation buffer (Bio-Rad) were specifically developed to easily transfect nucleic acids into mammalian cells and difficult-to-transfect cells, such as primary and stem cells. We will demonstrate how to perform a simple experiment to quickly identify the best electroporation conditions. We will demonstrate how to run several samples through a range of electroporation conditions so that an experiment can be conducted at the same time as optimization is performed. We will also show how optimal conditions identified using 96-well electroporation plates can be used with standard electroporation cuvettes, facilitating the switch from electroporation plates to electroporation cuvettes while maintaining the same electroporation efficiency. In the video, we will also discuss some of the key factors that can lead to the success or failure of electroporation experiments.

This procedure shows how to use the Gene Pulser MXcell electroporation system to rapidly and easily identify the best electroporation conditions for mouse embryonic fibroblasts (MEFs) or other primary cells. Considerations for troubleshooting are also discussed in the associated video.

Met behulp van de Gene Puiser MXcell Elektroporatie systeem om primaire cellen transfecteren met een hoog rendement

Using an Automated Cell Counter to Simplify Gene Expression Studies: siRNA Knockdown of IL-4 Dependent Gene Expression in Namalwa Cells

The use of siRNA mediated gene knockdown is continuing to be an important tool in studies of gene expression.  siRNA studies are being conducted not only to study the effects of downregulating single genes, but also to interrogate signaling pathways and other complex interaction networks.  These pathway analyses require both the use of relevant cellular models and methods that cause less perturbation to the cellular physiology.  Electroporation is increasingly being used as an effective way to introduce siRNA and other nucleic acids into difficult to transfect cell lines and primary cells without altering the signaling pathway under investigation. There are multiple critical steps to a successful siRNA experiment, and there are ways to simplify the work while improving the data quality at several experimental stages.  To help you get started with your siRNA mediated gene knockdown project, we will demonstrate how to perform a pathway study complete from collecting and counting the cells prior to electroporation through post transfection real-time PCR gene expression analysis.  The following study investigates the role of the transcriptional activator STAT6 in IL-4 dependent gene expression of CCL17 in a Burkitt lymphoma cell line (Namalwa).  The techniques demonstrated are useful for a wide range of siRNA-based experiments on both adherent and suspension cells.  We will also show how to streamline cell counting with the TC10 automated cell counter, how to electroporate multiple samples simultaneously using the MXcell electroporation system, and how to simultaneously assess RNA quality and quantity with the Experion automated electrophoresis system.

This procedure describes a quick and easy workflow to introduce siRNA into difficult to transfect cell lines and follow gene expression by real-time PCR. Use of an automated cell counter, multi-well electroporation plate, and automated electrophoresis station provide quick and reliable results without the need for expensive robotic handling.

Met behulp van een geautomatiseerde cel Counter aan Gene Expression Studies Vereenvoudigen: siRNA Knockdown van IL-4 Afhankelijk van genexpressie in cellen Namalwa

The use of siRNA mediated gene knockdown is continuing to be an important tool in studies of gene expression.  siRNA studies are being conducted not only ...

Paraffin-Embedded and Frozen Sections of Drosophila Adult Muscles

The molecular characterization of muscular dystrophies and myopathies in humans has revealed the complexity of muscle disease and genetic analysis of muscle specification, formation and function in model systems has provided valuable insight into muscle physiology. Therefore, identifying and characterizing molecular mechanisms that underlie muscle damage is critical. The structure of adult Drosophila multi-fiber muscles resemble vertebrate striated muscles 1 and the genetic tractability of Drosophila has made it a great system to analyze dystrophic muscle morphology and characterize the processes affecting muscular function in ageing adult flies 2. Here we present the histological technique for preparing paraffin-embedded and frozen sections of Drosophila thoracic muscles. These preparations allow for the tissue to be stained with classical histological stains and labeled with protein detecting dyes, and specifically cryosections are ideal for immunohistochemical detection of proteins in intact muscles. This allows for analysis of muscle tissue structure, identification of morphological defects, and detection of the expression pattern for muscle/neuron-specific proteins in Drosophila adult muscles. These techniques can also be slightly modified for sectioning of other body parts.

Paraffin-Embedded and Frozen Sections of Drosophila Adult Muscles

Identification of mechanisms underlying muscle damage is crucial. Here we present the histological technique for preparing paraffin-embedded and frozen sections of Drosophila thoracic muscles. This allows analysis of muscle morphology and localization of protein and other muscle cell components.

Paraffine ingebedde en vriescoupes van Drosophila Adult Spieren

The molecular characterization of muscular dystrophies and myopathies in humans has revealed the complexity of muscle disease and genetic analysis of ...

In vitro Reconstitution of the Active T. castaneum Telomerase

Efforts to isolate the catalytic subunit of telomerase, TERT, in sufficient quantities for structural studies, have been met with limited success for more than a decade. Here, we present methods for the isolation of the recombinant Tribolium castaneum TERT (TcTERT) and the reconstitution of the active T. castaneum telomerase ribonucleoprotein (RNP) complex in vitro.
Telomerase is a specialized reverse transcriptase1 that adds short DNA repeats, called telomeres, to the 3' end of linear chromosomes2 that serve to protect them from end-to-end fusion and degradation. Following DNA replication, a short segment is lost at the end of the chromosome3 and without telomerase, cells continue dividing until eventually reaching their Hayflick Limit4. Additionally, telomerase is dormant in most somatic cells5 in adults, but is active in cancer cells6 where it promotes cell immortality7.
The minimal telomerase enzyme consists of two core components: the protein subunit (TERT), which comprises the catalytic subunit of the enzyme and an integral RNA component (TER), which contains the template TERT uses to synthesize telomeres8,9. Prior to 2008, only structures for individual telomerase domains had been solved10,11. A major breakthrough in this field came from the determination of the crystal structure of the active12, catalytic subunit of T. castaneum telomerase, TcTERT1.
Here, we present methods for producing large quantities of the active, soluble TcTERT for structural and biochemical studies, and the reconstitution of the telomerase RNP complex in vitro for telomerase activity assays. An overview of the experimental methods used is shown in Figure 1.

In vitro Reconstitution of the Active T. castaneum Telomerase

Efforts to isolate the catalytic subunit of telomerase, TERT, in sufficient quantities for structural studies, have been met with limited success for more than a decade. Here, we present methods for the isolation of the recombinant Tribolium castaneum TERT (TcTERT) and the reconstitution of the active T. castaneum telomerase ribonucleoprotein (RNP) complex in vitro.

In vitro reconstitutie van de Active T. castaneum Telomerase

Efforts to isolate the catalytic subunit of telomerase, TERT, in sufficient quantities for structural studies, have been met with limited success for more ...

Efficient Agroinfiltration of Plants for High-level Transient Expression of Recombinant Proteins

Mammalian cell culture is the major platform for commercial production of human vaccines and therapeutic proteins. However, it cannot meet the increasing worldwide demand for pharmaceuticals due to its limited scalability and high cost. Plants have shown to be one of the most promising alternative pharmaceutical production platforms that are robust, scalable, low-cost and safe. The recent development of virus-based vectors has allowed rapid and high-level transient expression of recombinant proteins in plants. To further optimize the utility of the transient expression system, we demonstrate a simple, efficient and scalable methodology to introduce target-gene containing Agrobacterium into plant tissue in this study. Our results indicate that agroinfiltration with both syringe and vacuum methods have resulted in the efficient introduction of Agrobacterium into leaves and robust production of two fluorescent proteins; GFP and DsRed. Furthermore, we demonstrate the unique advantages offered by both methods. Syringe infiltration is simple and does not need expensive equipment. It also allows the flexibility to either infiltrate the entire leave with one target gene, or to introduce genes of multiple targets on one leaf. Thus, it can be used for laboratory scale expression of recombinant proteins as well as for comparing different proteins or vectors for yield or expression kinetics. The simplicity of syringe infiltration also suggests its utility in high school and college education for the subject of biotechnology. In contrast, vacuum infiltration is more robust and can be scaled-up for commercial manufacture of pharmaceutical proteins. It also offers the advantage of being able to agroinfiltrate plant species that are not amenable for syringe infiltration such as lettuce and Arabidopsis. Overall, the combination of syringe and vacuum agroinfiltration provides researchers and educators a simple, efficient, and robust methodology for transient protein expression. It will greatly facilitate the development of pharmaceutical proteins and promote science education.

Plants offer a novel system for the production of pharmaceutical proteins on a commercial scale that is more scalable, cost-efficient and safe than current expression paradigms. In this study, we report a simple and convenient, yet scalable approach to introduce target-gene containing Agrobacterium tumefaciens into plants for protein transient expression.

Efficiënte Agroinfiltration van planten voor High-level Tijdelijke expressie van recombinante eiwitten

Mammalian cell culture is the major platform for commercial production of human vaccines and therapeutic proteins. However, it cannot meet the increasing ...

Analysis of Global RNA Synthesis at the Single Cell Level following Hypoxia

Hypoxia or lowering of the oxygen availability is involved in many physiological and pathological processes. At the molecular level, cells initiate a particular transcriptional program in order to mount an appropriate and coordinated cellular response. The cell possesses several oxygen sensor enzymes that require molecular oxygen as cofactor for their activity. These range from prolyl-hydroxylases to histone demethylases. The majority of studies analyzing cellular responses to hypoxia are based on cellular populations and average studies, and as such single cell analysis of hypoxic cells are seldom performed. Here we describe a method of analysis of global RNA synthesis at the single cell level in hypoxia by using Click-iT RNA imaging kits in an oxygen controlled workstation, followed by microscopy analysis and quantification.&nbsp; Using cancer cells exposed to hypoxia for different lengths of time, RNA is labeled and measured in each cell. This analysis allows the visualization of temporal and cell-to-cell changes in global RNA synthesis following hypoxic stress.

We describe a technique for analysis of global RNA synthesis in hypoxia using imaging. Click-chemistry labeling of RNA has not previously been performed under hypoxia and allows visualization of global RNA changes at the single cell level. This approach complements the existing averaged RNA techniques, allowing direct visualization of cell-to-cell changes in global RNA synthesis.

Analyse van Global RNA synthese in de Single Cell Level volgende Hypoxie

Hypoxia or lowering of the oxygen availability is involved in many physiological and pathological processes. At the molecular level, cells initiate a ...

Measurement of Metabolic Rate in Drosophila using Respirometry

Metabolic disorders are a frequent problem affecting human health. Therefore, understanding the mechanisms that regulate metabolism is a crucial scientific task. Many disease causing genes in humans have a fly homologue, making Drosophila a good model to study signaling pathways involved in the development of different disorders. Additionally, the tractability of Drosophila simplifies genetic screens to aid in identifying novel therapeutic targets that may regulate metabolism. In order to perform such a screen a simple and fast method to identify changes in the metabolic state of flies is necessary. In general, carbon dioxide production is a good indicator of substrate oxidation and energy expenditure providing information about metabolic state. In this protocol we introduce a simple method to measure CO2 output from flies. This technique can potentially aid in the identification of genetic perturbations affecting metabolic rate.

Measurement of Metabolic Rate in Drosophila using Respirometry

Metabolic disorders are among one of the most common diseases in humans. The genetically tractable model organism D. melanogaster can be used to identify novel genes that regulate metabolism. This paper describes a relatively simple method which allows studying the metabolic rate in flies by measuring their CO2 production.

Meting van Metabolic Rate in<em&gt; Drosophila</em&gt; Gebruik respirometrietest

Metabolic disorders are a frequent problem affecting human health. Therefore, understanding the mechanisms that regulate metabolism is a crucial ...

High Yield Expression of Recombinant Human Proteins with the Transient Transfection of HEK293 Cells in Suspension

The art of producing recombinant proteins with complex post-translational modifications represents a major challenge for studies of structure and function. The rapid establishment and high recovery from transiently-transfected mammalian cell lines addresses this barrier and is an effective means of expressing proteins that are naturally channeled through the ER and Golgi-mediated secretory pathway. Here is one protocol for protein expression using the human HEK293F and HEK293S cell lines transfected with a mammalian expression vector designed for high protein yields. The applicability of this system is demonstrated using three representative glycoproteins that expressed with yields between 95-120 mg of purified protein recovered per liter of culture. These proteins are the human Fc&#947;RIIIa and the rat &#945;2-6 sialyltransferase, ST6GalI, both expressed with an N-terminal GFP fusion, as well as the unmodified human immunoglobulin G1 Fc. This robust system utilizes a serum-free medium that is adaptable for expression of isotopically enriched proteins and carbohydrates for structural studies using mass spectrometry and nuclear magnetic resonance spectroscopy. Furthermore, the composition of the N-glycan can be tuned by adding a small molecule to prevent certain glycan modifications in a manner that does not reduce yield.

Laboratory-scale production of eukaryotic proteins with appropriate post-translational modification represents a significant barrier. Here is a robust protocol with rapid establishment and turnaround for protein expression using a mammalian expression system. This system supports selective amino acid, selective labeling of proteins and small molecule modulators of glycan composition.