Name: design and construction of an urban runoff research facility
Uploaded: 2014-08-08T13:00:00
Description: Watch this Scientific Journal Video about Design and Construction of an Urban Runoff Research Facility at JoVE.com

作者は感謝して、この機能のためのスコッツミラクル-Groの会社からの財政支援を認める。また、灌漑コントローラを提供するとの支援のためのトロ社に感謝しています。このプロジェクトの初期段階における後期博士クリスSteiglerによるビジョンと計画も感謝して承諾される。著者はまた、試料調製および分析し​​た彼女の技術支援のために氏N.スタンレーに感謝したいと思います。

1サイト選択<ol><li>均一な3から4パーセントの勾配を有する邪魔されず、土壌の適切にサイズの領域を探します。 </li><li>地形調査を実施し、約10 MX 100メートルは平均3.7±0.5％の勾配を有する領域の輪郭を描く。 </li><li> 3つのブロックに10 MX 100メートルのエリアを分割し、それぞれ約10 MX 33.3メートル（ 図1）。 </li><li>長い8.2メートル、幅各4.1メートル、8フィールドプロットに各ブ?...

<ol>
	<li>Fulton, W., Pendall, R., Nguyen, M., Harrison, A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Who+sprawls+most?+How+growth+patterns+differ+across+the+U.S.+The+Brookings+Institution+Survey+Series.">Who sprawls most? How growth patterns differ across the U.S. The Brookings Institution Survey Series.</a> http://www.brookings.edu/~/media/research/files/reports/2001/7/metropolitanpolicy%20fulton/fulton. , (2001).</li><li>White, R. H., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=How+much+water+is+'enough'?+Using+PET+to+develop+water+budgets+for+residential+landscapes.">How much water is 'enough'? Using PET to develop water budgets for residential landscapes.</a> Proc. Texas Sec. Amer. Water Works Assoc. 7, 7 (2004).</li><li>Walsh, C. J., Roy, A. H., Feminella, J. W., Cottingham, P. D., Groffman, P. M., Morgan, R. P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+urban+stream+syndrome:+current+knowledge+and+the+search+for+a+cure.">The urban stream syndrome: current knowledge and the search for a cure.</a> J. North Am. Benthol. Soc. 24, 706-723 (2005).</li><li>. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=4R+Plant+Nutrition:+A+Manual+for+Improving+the+Management+of+Plant+Nutrition.">4R Plant Nutrition: A Manual for Improving the Management of Plant Nutrition.</a> International Plant Nutrition Institute. , (2012).</li><li>Miyomoto, S., Chacon, A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Soil+salinity+of+urban+turf+area+irrigated+with+saline+water+II.+Soil+factors.">Soil salinity of urban turf area irrigated with saline water II. Soil factors.</a> Landsc. Urban Plan. 77, 28-38 (2006).</li><li>Steele, M. K., Aitkenhead-Peterson, J. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Urban+soils+of+Texas:+Relating+irrigation+sodicity+to+water-extractable+carbon+and+nutrients.">Urban soils of Texas: Relating irrigation sodicity to water-extractable carbon and nutrients.</a> Soil Sci. Soc. Am. J. 76, 972-982 (2012).</li><li>Steele, M. K., Aitkenhead-Peterson, J. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Salt+impacts+on+organic+carbon+and+nitrogen+leaching+from+senesced+vegetation.">Salt impacts on organic carbon and nitrogen leaching from senesced vegetation.</a> Biogeochem. 112, 245-259 (2013).</li><li>Washbusch, R. J., Selbig, W. R., Bannerman, R. T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Sources+of+phosphorus+in+stormwater+and+street+dirt+from+two+urban+residential+basins.">Sources of phosphorus in stormwater and street dirt from two urban residential basins.</a> National Conference on Tools for Urban Water Resource Management and Protection Proceedings. , (2000).</li><li>Pitt, R., Chen, S., Clark, S. E., Swenson, J., Ong, C. K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Compaction's+impacts+on+urban+storm-water+infiltration.">Compaction's impacts on urban storm-water infiltration.</a> J. Irrigation Drainage Eng. 134, 652-658 (2008).</li><li>Kelling, K. A., Peterson, A. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Urban+lawn+infiltration+rates+and+fertilizer+runoff+losses+under+simulated+rainfall.">Urban lawn infiltration rates and fertilizer runoff losses under simulated rainfall.</a> Soil Sci. Soc. Am. J. 39, 349-352 (1975).</li><li>Edmondson, J. L., Davies, Z. G., McCormack, S. A., Gaston, K. J., Leake, J. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Are+soils+in+urban+ecosystems+compacted?+A+citywide+analysis.">Are soils in urban ecosystems compacted? A citywide analysis.</a> Biol. Lett. 7, 771-774 (2011).</li><li>Cunningham, M. A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+suburban+stream+syndrome:+Evaluating+land+use+and+stream+impairments+in+the+suburbs.">The suburban stream syndrome: Evaluating land use and stream impairments in the suburbs.</a> Phys. Geogr. 30, 269-284 (2009).</li><li>Erickson, J. E., Cisar, J. L., Volin, J. C., Snyder, G. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Comparing+nitrogen+runoff+and+leaching+between+newly+established+St.+Augustinegrass+turf+and+an+alternative+residential+landscape.">Comparing nitrogen runoff and leaching between newly established St. Augustinegrass turf and an alternative residential landscape.</a> Crop Sci. 41, 1889-1895 (2001).</li><li>Morton, T. G., Gold, A. J., Sullivan, W. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Influence+of+overwatering+and+fertilization+on+nitrogen+losses+from+home+lawns.">Influence of overwatering and fertilization on nitrogen losses from home lawns.</a> J. Environ. Qual. 17, 124-130 (1988).</li><li>O'Dell, J. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Method+415.1+Organic+carbon,+total+(combustion+or+oxidation).">Method 415.1 Organic carbon, total (combustion or oxidation).</a> Methods for Chemical Analysis of Water and Wastes. , 415.1-415.3 (1983).</li><li>O'Dell, J. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Determination+of+phosphorus+by+semi+automated+colorimetry.+Environmental+monitoring+systems+laboratory,+Office+of+research+and+development.">Determination of phosphorus by semi automated colorimetry. Environmental monitoring systems laboratory, Office of research and development.</a> U.S. Environmental Protection Agency. , (1993).</li><li>O'Dell, J. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Determination+of+nitrate+nitrogen+by+semi+automated+colorimetry.+Revision+2.0+Edited+by+JW+O'Dell,+Environmental+monitoring+systems+laboratory.">Determination of nitrate nitrogen by semi automated colorimetry. Revision 2.0 Edited by JW O'Dell, Environmental monitoring systems laboratory.</a> Office of research and development, U.S. Environmental Protection Agency. , (1993).</li><li>O'Dell, J. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Determination+of+ammonia+nitrogen+by+semi+automated+colorimetry.+Revision+2.0+Edited+by+JW+O'Dell,+Environmental+monitoring+systems+laboratory.">Determination of ammonia nitrogen by semi automated colorimetry. Revision 2.0 Edited by JW O'Dell, Environmental monitoring systems laboratory.</a> Office of research and development, U.S. Environmental Protection Agency. , (1993).</li><li>Gobel, P., Dierkes, C., Coldewey, W. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Storm+water+runoff+concentration+matrix+for+urban+areas.">Storm water runoff concentration matrix for urban areas.</a> J. Contam. Hydrol. 91, 26-42 (2007).</li><li>Vietor, D. M., Provin, T. L., White, R. H., Munster, C. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Runoff+losses+of+phosphorus+and+nitrogen+imported+in+sod+or+composted+manure+for+turf+establishment.">Runoff losses of phosphorus and nitrogen imported in sod or composted manure for turf establishment.</a> J. Env. Qual. 33, 358-366 (2004).</li></ol>

水が中に、オーバー流れ、土壌を通じて大幅に地形、植生被覆、土壌の物理的性質に影響されます。高い粘土含有量の過度固め土壌と土壌は低下し、浸透率と流出量の増加を示すであろう。この種の施設を建設する際そのため、あらゆる努力は、均一な勾配を有するネイティブの土壌を使用し、建設中の実験的な領域にすべてのタイプのトラフィックからの圧縮を最小限にするためになされ?...

最も急速に成長している、非常に人口の大都市圏のうちの4つは、亜熱帯気候の1にアメリカ南部に位置しています。また、1982年から1997年の間に都市化の土地で最大のパーセント変化は、米国南部で発生した1。増加し、都市部では夏の2時に屋外での使用のために使用されるその多くは飲料水のための付随需要は、付属しています。新しい構成により、プログラム可能な地下灌漑システムは、多くの場合、インストールされている。残念ながら、これらのシステムは、多くの場合、より頻繁にかつ/またはランドスケープ2の蒸 ​​発散量の要求を超えたボリュームで、都市景観への灌漑を送達するようにプログラムされている。これは、都市ストリーム症候群3と呼ばれているものに寄与する、都市景観から水を受け取ることに流出かなりの量になる。都市ストリーム症候群の症状は、地表流やびらん性流れの頻度を増加nitrogeの増加、nは（N）、リン（P）、毒物、およびチャネル形態の変化に加えて、温度、淡水生物学、生態系3を処理する。 農業生態系からNとPの損失が広く研究4つの要因に主に依存することが見出されている：栄養源、適用率、印加タイミング、および栄養配置4。少なく公表されたデータは、現在の都市景観からの栄養素のオフサイト移動に存在するが、これらの原理は、直接かどうか、ホーム芝生、芝の農場、公園、その他の緑の空間で、芝草文化に適用することができます。また、風景から流出につながる不適切な灌漑慣行は、これらの損失を悪化させることができます。 栄養損失はさらに灌漑水の水質によって変化させることができる。南西米国の地域は、多くの場合、自宅の芝生や都市景観5,6の灌漑のためのより生理食塩水または産するアルカリ水を利用する。の化学組成灌漑用水が大幅流出水に炭素、窒素、カルシウム、および他の陽イオンの放出を引き起こす土壌の化学的性質を変化させることができる。最近の研究は、抽出水の増加ナトリウム吸収率（SAR）は大幅にセントAugustinegrassの切り抜き、ライグラスの切り抜き、および他の有機材料7から浸出炭素（C）と窒素（N）の量を増加することを示した。また、レクリエーションの芝草土壌からの水抽出可能な土壌、C、N、およびP損失が大幅に灌漑用水の化学成分と相関していた6。 Washbusch ら 。マディソン、ウィスコンシン、都市流出を研究し、芝生が全リン8の最大の貢献者であることを見出した。さらに、それらはまた、「ストリートダート」の総Pの25％が葉や刈芝から生じたことを見出した。典型的な田舎の設定では、落葉が地面に落下した後、sに戻ってゆっくりと放出する栄養素を分解し、油環境。しかし、都市環境では、栄養豊富な葉や草の切り抜き、かなりの量は、上に落ちたり、そのような車道、歩道、そして車道などhardscapesに洗浄したり吹き飛ばさ、その後彼らは &quot;ストリート·汚れ」に貢献する街への道を作る、そのうちの多くは受信水路に直接洗浄されます。 都市景観の土壌も減少による浸透速度9に流出量を増加させることができる工事中にしばしば乱され、高度に圧縮されている。 Kellingのとピーターソンは、総流出量と家庭の芝生から流出量の栄養塩濃度の両方が圧縮され、あるいは重大な障害以前の建設活動10による撹乱土壌断面を持って芝生から増加していることを報告した。エドモンドソンら 。一方で、都市部の土壌はLeicの都市部と郊外地域の周囲の農地に比べて少ない圧縮さであることを見出したエステル、英国11。彼らは使用重い農業機械にこれを起因が、彼らはまた、芝生の草刈り、より大きな人間踏みつけに起因するものであった樹木の下の土壌よりも大きな土の嵩密度を有していたことを指摘した。 それは、多くの状況において、都市部と郊外のストリームシンドロームが大幅に流出し、点光源が3,12を放電することにより、影響を受けるように思われる。ポイント·ソースは許可やリサイクルを通して操作することができますが、追加の研究が流れ落ちるまで栄養素の損失を最小限に抑えるために、家庭の芝生の確立と管理のための最善の管理手順を開発し、テストするために必要とされる。この点でこれまでの研究努力は、多くの場合、沿岸海域への栄養素の損失を浸出し、流出の影響に関連した懸念に起因する高い砂含有土壌が存在する沿岸地域に沿って中心にされてきた。非常に砂質土壌で作業する場合ただし、一方が属することができるように急な斜面や高降雨率を持っている必要がありますいずれの流出13,14 TEをこれとは対照的に、中央アメリカでの土壌の多くは、微細凹凸であり、小さくても降雨イベントからの流出、かなりの量になり、低浸透率を持っている。したがって、本来の土壌や住宅の景観に発生する可能性のある典型的な斜面に流出施設を設計し、構築することが望まれた。 本論文では、測定および定量化のために、比較的小さな時間分解能および選択した体積または時間間隔で、流出水のサブサンプルの同時収集における全流出量を測定するための24の個別33.6メートル2フィールドプロットを含む千メートル2施設の設計、建設、機能を説明流出水の化学成分の。

<table border="0" cellpadding="0" cellspacing="0" width="778">
	<tbody>
		<tr height="21">
			<td height="21" style="height:21px;width:244px;">Flow meter</td>
			<td style="width:151px;">Teledyne Isco</td>
			<td style="width:216px;">Model 4230</td>
			<td style="width:167px;">Bubbling flow meter that measures and records water flow through flume</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Portable Sampler</td>
			<td>Teledyne Isco</td>
			<td>Model 6712</td>
			<td>Works in conjunction with the flow meter to collect water samples at predetermined intervals.</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Flow Link Software to collect data</td>
			<td>Teledyne Isco</td>
			<td>Ver 5.0</td>
			<td>Allows communication between flow meter and computer</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Pre-sloped trench drain</td>
			<td>Zurn Industries, LLC</td>
			<td>Z-886</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Irrigation Controller</td>
			<td>Toro Company</td>
			<td>VP Satellite</td>
			<td>Controls irrigation to each plot individually</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Electric Valves</td>
			<td>Hunter</td>
			<td>2.5 cm PGV</td>
			<td>Opens or closes water flow to individual plots based on signal from irrigation controller</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Spray nozzles</td>
			<td>RainBird</td>
			<td>HE-Van 12</td>
			<td>Sprays irrigation water in predetermined pattern and rate</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Irrigation heads</td>
			<td>Hunter</td>
			<td>Pro Spray 4</td>
			<td>4 inch pop up spray heads</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">6 inch slotted drain pipe</td>
			<td>Advanced Drainage Systems</td>
			<td>6410100</td>
			<td>single wall corregated HDPE - slotted</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">6 inch plain drain pipe</td>
			<td>Advanced Drainage Systems</td>
			<td>6400100</td>
			<td>single wall corregated HDPE - plain</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Filter Paper</td>
			<td>Whatman GF/F</td>
			<td>1825-047</td>
			<td>47mm diameter, binder-free, glass microfiber filter</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">pH Meter</td>
			<td>Fisher</td>
			<td>Accumet XL20</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Combination pH probe</td>
			<td>Fisher</td>
			<td>13-620-130</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Automatic Temperature Compensating Probe</td>
			<td>Fisher</td>
			<td>13-602-19</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Electrical conductivity probe</td>
			<td>Fisher</td>
			<td>13-620-100</td>
			<td>Cell constant of 1.0</td>
		</tr>
		<tr height="25">
			<td height="25" style="height:25px;">&#160;TOC-VCSH with total nitrogen unit TMN-1</td>
			<td>Shimadzu Corp</td>
			<td>TOC-VCSH with TMN-1</td>
			<td>dissolved C and N analyzer</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Smartchem 200</td>
			<td>Unity Scientific</td>
			<td>200</td>
			<td>Discrete Analyzer for P measurement</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">ICS 1000</td>
			<td>Dionex</td>
			<td>ICS 1000</td>
			<td>Ion Chromatography for Ca, Mg, K and Na measurment</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:244px;">Portable Soil Moisture Meter</td>
			<td>Spectrum&#160;</td>
			<td style="width:216px;">FieldScout TDR 300</td>
			<td>7.5 cm long probes</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:244px;">Totallizing Water Meters</td>
			<td style="width:151px;">Badger</td>
			<td style="width:216px;">3/4 inch water meters</td>
			<td>standard homeowner water meters</td>
		</tr>
	</tbody>
</table>

design and construction of an urban runoff research facility

都市人口が増加するにつれ、灌漑、都市景観の面積を行います。都市部の夏の水利用は、景観灌漑の需要増によるもので2〜3倍の冬のベースラインの水使用することができます。不適切な灌漑慣行や大降雨現象は、彼らが富栄養化に寄与することができる地元の河川や湖に栄養分や堆積物を運ぶ可能性を秘めている、都市景観から流出する可能性があります。千メートル2施設は、24の個別33.6メートル2フィールドプロット、シミュレートされた都市の景観からの流出水中の化学成分の定量化のために選択された間隔で、時間と流出サブサンプルの収集と総流出量を測定するために装備それぞれで構成されて構築した。第一及び第二の試験から流出量は、それぞれ38.2および28.7％の値を変動係数（CV）を持っていた。両試験のための流出のpH、EC、およびNa濃度用のCV値は、すべて10％未満であった。 ConcentratioDOCのナノ秒、TDN、DON、PO 4-P、K +はMg 2 +およびCa 2 +の CVは、両方の試験において50％未満の値であった。全体的にみて、施設で芝のインストール後に実施したテストの結果は、流出量や化学成分のプロットの間の良好な均一性を示した。大プロットサイズは​​、自然変動の多くを含むので、都市景観生態系のより良好なシミュレーションを提供するのに十分である。

プロット特性 全24プロットの平均勾配は3.7％だったとプロット2（ 表1）のために、プロット17 3.2％という低い4.1％の高い範囲であった。平均表土の厚さ36 cmであり、プロット24 25.0 cmと低いからプロット10 51.5センチ（ 表1）の高い範囲であった。 流出量 2012年8月9日の最初の試験からの流出量は213.5 Lの平均を持っていたと変動係数38.2％の?...

Watch this Scientific Journal Video about Design and Construction of an Urban Runoff Research Facility at JoVE.com

Design and Construction of an Urban Runoff Research Facility

本論文では、からの流出水に化学成分の定量化のために選択された間隔で、時間と流出サブサンプル集で、総流出量を測定するために装備24の個別33.6メートル2フィールドプロットを含む千メートル2施設の設計、建設、および機能について説明しますシミュレートされた家の芝生。

アーバン流出研究施設の設計と建設

As the urban population increases, so does the area of irrigated urban landscape. Summer water use in urban areas can be 2-3x winter base line water use ...

design-and-construction-of-an-urban-runoff-research-facility

Research

JoVE Journal

Environment

Design and Operation of a Continuous 13C and 15N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling

Tracing rare stable isotopes from plant material through the ecosystem provides the most sensitive information about ecosystem processes; from CO2 fluxes and soil organic matter formation to small-scale stable-isotope biomarker probing. Coupling multiple stable isotopes such as 13C with 15N, 18O or&#160;2H has the potential to reveal even more information about complex stoichiometric relationships during biogeochemical transformations. Isotope labeled plant material has been used in various studies of litter decomposition and soil organic matter formation1-4. From these and other studies, however, it has become apparent that structural components of plant material behave differently than metabolic components (i.e. leachable low molecular weight compounds) in terms of microbial utilization and long-term carbon storage5-7. The ability to study structural and metabolic components separately provides a powerful new tool for advancing the forefront of ecosystem biogeochemical studies. Here we describe a method for producing 13C and 15N labeled plant material that is either uniformly labeled throughout the plant or differentially labeled in structural and metabolic plant components.
Here, we present the construction and operation of a continuous 13C and 15N labeling chamber that can be modified to meet various research needs. Uniformly labeled plant material is produced by continuous labeling from seedling to harvest, while differential labeling is achieved by removing the growing plants from the chamber weeks prior to harvest. Representative results from growing Andropogon gerardii Kaw demonstrate the system&#39;s ability to efficiently label plant material at the targeted levels. Through this method we have produced plant material with a 4.4 atom%13C and 6.7 atom%15N uniform plant label, or material that is differentially labeled by up to 1.29 atom%13C and 0.56 atom%15N in its metabolic and structural components (hot water extractable and hot water residual components, respectively). Challenges lie in maintaining proper temperature, humidity, CO2 concentration,&#160;and light levels in an airtight 13C-CO2 atmosphere for successful plant production. This chamber description represents a useful research tool to effectively produce uniformly or differentially multi-isotope labeled plant material for use in experiments on ecosystem biogeochemical cycling.

Design and Operation of a Continuous 13C and 15N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling

This method explains how to build and operate a continuous 13C and 15N isotope labeling chamber for uniform or differential plant tissue labeling. Representative results from metabolic and structural labeling of Andropogon gerardii are discussed.

連続の設計および動作<sup&gt; 13</sup&gt; Cと<sup&gt; 15</sup均一または差動、代謝および構造·&gt; N標識化会議所、工場同位体ラベル化

Tracing rare stable isotopes from plant material through the ecosystem provides the most sensitive information about ecosystem processes; from CO2 fluxes ...

環境学

A Protocol for Conducting Rainfall Simulation to Study Soil Runoff

Rainfall is a driving force for the transport of environmental contaminants from agricultural soils to surficial water bodies via surface runoff. The objective of this study was to characterize the effects of antecedent soil moisture content on the fate and transport of surface applied commercial urea, a common form of nitrogen (N) fertilizer, following a rainfall event that occurs within 24&#160;hr&#160;after fertilizer application. Although urea is assumed to be readily hydrolyzed to ammonium and therefore not often available for transport, recent studies suggest that urea can be transported from agricultural soils to coastal waters where it is implicated in harmful algal blooms. A rainfall simulator was used to apply a consistent rate of uniform rainfall across packed soil boxes that had been prewetted to different soil moisture contents. By controlling rainfall and soil physical characteristics, the effects of antecedent soil moisture on urea loss were isolated. Wetter soils exhibited shorter time from rainfall initiation to runoff initiation, greater total volume of runoff, higher urea concentrations in runoff, and greater mass loadings of urea in runoff. These results also demonstrate the importance of controlling for antecedent soil moisture content in studies designed to isolate other variables, such as soil physical or chemical characteristics, slope, soil cover, management, or rainfall characteristics. Because rainfall simulators are designed to deliver raindrops of similar size and velocity as natural rainfall, studies conducted under a standardized protocol can yield valuable data that, in turn, can be used to develop models for predicting the fate and transport of pollutants in runoff.

A rainfall simulator was used to apply a consistent rate of uniform rainfall to packed soil boxes in a study of the fate and transport of urea, a nonpoint source environmental contaminant. Under uniform soil and rainfall conditions, antecedent soil moisture content exerted strong control over urea loss in surface runoff.

土壌流出を研究する降雨シミュレーションを行うためのプロトコル

Rainfall is a driving force for the transport of environmental contaminants from agricultural soils to surficial water bodies via surface runoff. The ...

A CO2 Concentration Gradient Facility for Testing CO2 Enrichment and Soil Effects on Grassland Ecosystem Function

Continuing increases in atmospheric carbon dioxide concentrations (CA) mandate techniques for examining impacts on terrestrial ecosystems. Most experiments examine only two or a few levels of CA concentration and a single soil type, but if CA can be varied as a gradient from subambient to superambient concentrations on multiple soils, we can discern whether past ecosystem responses may continue linearly in the future and whether responses may vary across the landscape. The Lysimeter Carbon Dioxide Gradient Facility applies a 250 to 500 &#181;l L-1 CA gradient to Blackland prairie plant communities established on lysimeters containing clay, silty clay, and sandy soils. The gradient is created as photosynthesis by vegetation enclosed in in temperature-controlled chambers progressively depletes carbon dioxide from air flowing directionally through the chambers. Maintaining proper air flow rate, adequate photosynthetic capacity, and temperature control are critical to overcome the main limitations of the system, which are declining photosynthetic rates and increased water stress during summer. The facility is an economical alternative to other techniques of CA enrichment, successfully discerns the shape of ecosystem responses to subambient to superambient CA enrichment, and can be adapted to test for interactions of carbon dioxide with other greenhouse gases such as methane or ozone.

A CO2 Concentration Gradient Facility for Testing CO2 Enrichment and Soil Effects on Grassland Ecosystem Function

The Lysimeter Carbon Dioxide Gradient Facility creates a 250 to 500 &#181;l L-1 linear carbon dioxide gradient in temperature-controlled chambers housing grassland plant communities on clay, silty clay, and sandy soil monoliths. The facility is used to determine how past and future carbon dioxide levels affect grassland carbon cycling.

CO<sub&gt; 2</subテスト用のCO&gt;濃度勾配施設<sub&gt; 2</sub&gt;濃縮および草地生態系の機能に及ぼす土壌の影響

Continuing increases in atmospheric carbon dioxide concentrations (CA) mandate techniques for examining impacts on terrestrial ecosystems. Most ...

Spotting Cheetahs: Identifying Individuals by Their Footprints

The cheetah (Acinonyx jubatus) is Africa's most endangered large felid and listed as Vulnerable with a declining population trend by the IUCN1. It ranges widely over sub-Saharan Africa and in parts of the Middle East. Cheetah conservationists face two major challenges, conflict with landowners over the killing of domestic livestock, and concern over range contraction. Understanding of the latter remains particularly poor2. Namibia is believed to support the largest number of cheetahs of any range country, around 30%, but estimates range from 2,9053 to 13,5204. The disparity is likely a result of the different techniques used in monitoring.
Current techniques, including invasive tagging with VHF or satellite/GPS collars, can be costly and unreliable. The footprint identification technique5 is a new tool accessible to both field scientists and also citizens with smartphones, who could potentially augment data collection. The footprint identification technique analyzes digital images of footprints captured according to a standardized protocol. Images are optimized and measured in data visualization software. Measurements of distances, angles, and areas of the footprint images are analyzed using a robust cross-validated pairwise discriminant analysis based on a customized model. The final output is in the form of a Ward's cluster dendrogram. A user-friendly graphic user interface (GUI) allows the user immediate access and clear interpretation of classification results.
The footprint identification technique algorithms are species specific because each species has a unique anatomy. The technique runs in a data visualization software, using its own scripting language (jsl) that can be customized for the footprint anatomy of any species. An initial classification algorithm is built from a training database of footprints from that species, collected from individuals of known identity. An algorithm derived from a cheetah of known identity is then able to classify free-ranging cheetahs of unknown identity. The footprint identification technique predicts individual cheetah identity with an accuracy of &gt;90%.

The cheetah (Acinonyx jubatus) is an iconic, endangered species, but conservation efforts are challenged by habitat shrinkage and conflict with commercial farmers. The footprint identification technique, a robust, accurate and cost-effective image classification system, is a new approach to monitoring cheetahs.

彼らの足跡によって識別個人：チータースポッティング

The cheetah (Acinonyx jubatus) is Africa's most endangered large felid and listed as Vulnerable with a declining population trend by the IUCN1. It ranges ...

Vegetated Treatment Systems for Removing Contaminants Associated with Surface Water Toxicity in Agriculture and Urban Runoff

Urban stormwater and agriculture irrigation runoff contain a complex mixture of contaminants that are often toxic to adjacent receiving waters. Runoff may be treated with simple systems designed to promote sorption of contaminants to vegetation and soils and promote infiltration. Two example systems are described: a bioswale treatment system for urban stormwater treatment, and a vegetated drainage ditch for treating agriculture irrigation runoff. Both have similar attributes that reduce contaminant loading in runoff: vegetation that results in sorption of the contaminants to the soil and plant surfaces, and water infiltration. These systems may also include the integration of granulated activated carbon as a polishing step to remove residual contaminants. Implementation of these systems in agriculture and urban watersheds requires system monitoring to verify treatment efficacy. This includes chemical monitoring for specific contaminants responsible for toxicity. The current paper emphasizes monitoring of current use pesticides since these are responsible for surface water toxicity to aquatic invertebrates.

This article summarizes the design attributes and the effectiveness of treatment systems that treat urban stormwater and agriculture irrigation runoff to remove pesticides and other contaminants associated with aquatic toxicity.

農業および都市流出における地表水毒性に伴う汚染物質除去のための植物処理システム

Urban stormwater and agriculture irrigation runoff contain a complex mixture of contaminants that are often toxic to adjacent receiving waters. Runoff may ...

Design and Use of an Apparatus for Quantifying Bivalve Suspension Feeding at Sea

As shellfish aquaculture moves from coastal embayments and estuaries to offshore locations, the need to quantify ecosystem interactions of farmed bivalves (i.e., mussels, oysters, and clams) presents new challenges. Quantitative data on the feeding behavior of suspension-feeding mollusks is necessary to determine important ecosystem interactions of offshore shellfish farms, including their carrying capacity, the competition with the zooplankton community, the availability of trophic resources at different depths, and the deposition to the benthos. The biodeposition method is used to quantify feeding variables in suspension-feeding bivalves in a natural setting and represents a more realistic proxy than laboratory experiments. This method, however, relies upon a stable platform to satisfy the requirements that water flow rates supplied to the shellfish remain constant and the bivalves are undisturbed. A flow-through device and process for using the biodeposition method to quantify the feeding of bivalve mollusks were modified from a land-based format for shipboard use by building a two-dimensional gimbal table around the device. Planimeter data reveal a minimal pitch and yaw of the chambers containing the test shellfish despite boat motion, the flow rates within the chambers remain constant, and operators are able to collect the biodeposits (feces and pseudofeces) with sufficient consistency to obtain accurate measurements of the bivalve clearance, filtration, selection, ingestion, rejection, and absorption at offshore shellfish aquaculture sites.

A flow-through device for using the biodeposition method to quantify filtration and feeding behavior of bivalve mollusks was modified for shipboard use. A two-dimensional gimbal table built around the device isolates the apparatus from boat motion, thereby allowing the accurate quantification of bivalve filtration variables at offshore shellfish aquaculture sites.

デザインと二枚貝のサスペンションが海で餌を定量化するための装置の使用

As shellfish aquaculture moves from coastal embayments and estuaries to offshore locations, the need to quantify ecosystem interactions of farmed bivalves ...

Construction of a Compact Low-Cost Radiation Shield for Air-Temperature Sensors in Ecological Field Studies

Low cost temperature sensors are increasingly used by ecologists to assess climatic variation and change on ecologically relevant scales. Although cost-effective, if not deployed with proper solar radiation shielding, the observations recorded from these sensors will be biased and inaccurate. Manufactured radiation shields are effective at minimizing this bias, but are expensive compared to the cost of these sensors. Here, we provide a detailed methodology for constructing a compact version of a previously described custom fabricated radiation shield, which is more accurate than other published shielding methods that attempt to minimize shield size or construction costs. The method requires very little material: corrugated plastic sheets, aluminum foil duct tape, and cable ties. One 15 cm and two 10 cm squares of corrugated plastic are used for each shield. After cutting, scoring, taping and stapling of the sheets, the 10 cm squares form the bottom two layers of the solar radiation shield, while the 15 cm square forms the top layer. The three sheets are held together with cable ties. This compact solar radiation shield can be suspended, or placed against any flat surface. Care must be taken to ensure that the shield is completely parallel to the ground to prevent direct solar radiation from reaching the sensor, possibly causing increased warm biases in sun-exposed sites in the morning and afternoon relative to the original, larger design. Even so, differences in recorded temperatures between the smaller, compact shield design and the original design were small (mean daytime bias = 0.06 &#176;C). Construction costs are less than half of the original shield design, and the new design results in a less conspicuous instrument that may be advantageous in many field ecology settings.

With the advent of small, low-cost environmental sensors, it is now possible to deploy high-density networks of sensors to measure hyper localized temperature variation. Here, we provide a detailed methodology for constructing a compact version of a previously described custom-fabricated radiation shield for use with inexpensive thermochrons.

生態学的フィールド研究の空気温度センサー用小型低コストの放射線シールドの施工

Low cost temperature sensors are increasingly used by ecologists to assess climatic variation and change on ecologically relevant scales. Although ...

Construction of a Low-cost Mobile Incubator for Field and Laboratory Use

Incubators are essential for a range of culture-based microbial methods, such as membrane filtration followed by cultivation for assessing drinking water quality. However, commercially available incubators are often costly, difficult to transport, not flexible in terms of volume, and/or poorly adapted to local field conditions where access to electricity is unreliable. The purpose of this study was to develop an adaptable, low-cost and transportable incubator that can be constructed using readily available components. The electronic core of the incubator was first developed. These components were then tested under a range of ambient temperature conditions (3.5 &#176;C - 39 &#176;C) using three types of incubator shells (polystyrene foam box, hard cooler box, and cardboard box covered with a survival blanket). The electronic core showed comparable performance to a standard laboratory incubator in terms of the time required to reach the set temperature, inner temperature stability and spatial dispersion, power consumption, and microbial growth. The incubator set-ups were also effective at moderate and low ambient temperatures (between 3.5 &#176;C and 27 &#176;C), and at high temperatures (39 &#176;C) when the incubator set temperature was higher. This incubator prototype is low-cost (&lt; 300 USD) and adaptable to a variety of materials and volumes. Its demountable structure makes it easy to transport. It can be used in both established laboratories with grid power or in remote settings powered by solar energy or a car battery. It is particularly useful as an equipment option for field laboratories in areas with limited access to resources for water quality monitoring.

This paper describes a method for building an adaptable, low-cost and transportable incubator for microbial testing of drinking water. Our design is based on widely available materials and can operate under a range of field conditions, while still offering the advantages of higher-end laboratory-based models.

フィールドと実験室の使用のための低コスト モバイル インキュベーターの建設

Incubators are essential for a range of culture-based microbial methods, such as membrane filtration followed by cultivation for assessing drinking water ...

Combining Eye-tracking Data with an Analysis of Video Content from Free-viewing a Video of a Walk in an Urban Park Environment

As individuals increasingly live in cities, methods to study their everyday movements and the data that can be collected becomes important and valuable. Eye-tracking informatics are known to connect to a range of feelings, health conditions, mental states and actions. But because vision is the result of constant eye-movements, teasing out what is important from what is noise is complex and data intensive. Furthermore, a significant challenge is controlling for what people look at compared to what is presented to them.
The following presents a methodology for combining and analyzing eye-tracking on a video of a natural and complex scene with a machine learning technique for analyzing the content of the video. In the protocol we focus on analyzing data from filmed videos, how a video can be best used to record participants&#39; eye-tracking data, and importantly how the content of the video can be analyzed and combined with the eye-tracking data. We present a brief summary of the results and a discussion of the potential of the method for further studies in complex environments.

The objective of the protocol is to detail how to collect video data for use in the laboratory; how to record eye-tracking data of participants looking at the data and how to efficiently analyze the content of the videos that they were looking at using a machine learning technique.

都市公園環境における歩行の映像を自由に視聴する映像コンテンツの分析とアイトラッキングデータを組み合わせる

As individuals increasingly live in cities, methods to study their everyday movements and the data that can be collected becomes important and valuable. ...

Measuring the Shape and Size of Activated Sludge Particles Immobilized in Agar with an Open Source Software Pipeline

Experimental bioreactors, such as those treating wastewater, contain particles whose size and shape are important parameters. For example, the size and shape of activated sludge flocs can indicate the conditions at the microscale, and also directly affect how well the sludge settles in a clarifier.
Particle size and shape are both misleadingly &#39;simple&#39; measurements. Many subtle issues, often unaddressed in informal protocols, can arise when sampling, imaging, and analyzing particles. Sampling methods may be biased or not provide enough statistical power. The samples themselves may be poorly preserved or undergo alteration during immobilization. Images may not be of sufficient quality; overlapping particles, depth of field, magnification level, and various noise can all produce poor results. Poorly specified analysis can introduce bias, such as that produced by manual image thresholding and segmentation.
Affordability and throughput are desirable alongside reproducibility. An affordable, high throughput method can enable more frequent particle measurement, producing many images containing thousands of particles. A method that uses inexpensive reagents, a common dissecting microscope, and freely-available open source analysis software allows repeatable, accessible, reproducible, and partially-automated experimental results. Further, the product of such a method can be well-formatted, well-defined, and easily understood by data analysis software, easing both within-lab analyses and data sharing between labs.
We present a protocol that details the steps needed to produce such a product, including: sampling, sample preparation and immobilization in agar, digital image acquisition, digital image analysis, and examples of experiment-specific figure generation from the analysis results. We have also included an open-source data analysis pipeline to support this protocol.

The size and shape of particles in activated sludge are important parameters that are measured using varying methods. Inaccuracies arise from non-representative sampling, suboptimal images, and subjective analysis parameters. To minimize these errors and ease measurement, we present a protocol specifying every step, including an open source software pipeline.

オープン ソース ソフトウェア パイプラインによる寒天培地に固定化活性汚泥粒子径・形状を測定

Experimental bioreactors, such as those treating wastewater, contain particles whose size and shape are important parameters. For example, the size and ...