Name: imaging serotonergic fibers in the mouse spinal cord using the clarity/cubic technique
Uploaded: 2016-02-26T14:00:00
Description: Watch this Scientific Journal Video about Imaging Serotonergic Fibers in the Mouse Spinal Cord Using the CLARITY/CUBIC Technique at JoVE.com

This work was supported by the Australian Research Council Centre of Excellence for Integrative Brain Function (ARC Centre Grant CE140100007), an NHMRC project grant (#1086643). Prof. George Paxinos is supported by a Senior Principal Research Fellow NHMRC grant (#1043626).

Etik Beyanı: Hayvan denekleri tüm işlemler (onaylı ACEC numarası 14 / 94A ise) New South Wales Üniversitesi&#39;nde Hayvan Bakım ve Etik Komitesi (ACEC) yönergeleri izleyin. Şeffaf Fare Omurilik 1. Hazırlık <ol><li> Buz Hidrojel Çözüm hazırlanması <ol><li> % 16 paraformaldehit solüsyonunun hazırlanması (PFA) <ol><li> 70 ml önceden ısıtılmış damıtılmış su (50-55 ° C) içine 16 g paraformaldehit tozu eklenir ve paraformaldehit çözünene kadar ısıtılmış bi...

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protokol kombine CLARITY ve KÜP teknikleri ile fare omurilik görüntü serotonerjik lifleri nasıl gösterir nitelendirdi. Bu Cheung vd. 14 ve TÖMER&#39;ler ve ark., 15 tarafından geliştirilen pasif temizleme protokolüne göre daha hızlı bir temizleme işlemi sunar ve omurilik dokusu de temizleme esnasında hidrojel tarafından desteklenmesi sağlar. Cheung ve ark., 14 ve Tomer ark. 15 tarafından bildiri...

Supraspinal projections are responsible for the modulation of diverse behaviors such as pain perception. One of the projections carrying nociceptive information contains serotoninergic fibers, which originate from the hindbrain raphe and adjacent reticular nuclei1,2. Physiological and pharmacological studies have demonstrated an increased release of serotonin in the dorsal horn of the spinal cord after electrical stimulation of the raphe nuclei in the hindbrain3-5. In the rat and opossum, serotonergic raphespinal fibers have dense terminals, not only in the dorsal horn6-8, but also in the intermediate zone7,9,10, the ventral horn7,11, and even lamina 1012,13. There are no similar studies in the mouse. The present study aimed to map the termination pattern of serotonergic fibers arising from the hindbrain raphe nuclei and their adjacent reticular nuclei in the mouse spinal cord using the recently published CLARITY14 method and its modification - CUBIC15. 
Conventional fluorescence or peroxidase immunohistochemistry of the spinal cord clearly shows the distribution of serotonergic fibers in the gray matter of the spinal cord in 30-40 &#181;m thick cross-sections. However, this approach does not show the continuity of the serotonergic fiber tracts in the white matter and their collaterals in the gray matter. Although the 3D reconstruction of histological sections has advanced our knowledge of fiber tracts, it remains a challenge for histologists and anatomists to follow a single tract due to small distortions in the tissue caused by cutting. To circumvent this obstacle a number of researchers have developed various protocols for making the whole tissue structure transparent, and collecting an image of unaltered tissue in a single video file17-21. So far, the clear, lipid-exchanged, acrylamide-hybridized rigid, imaging/ immunostaining compatible, tissue hydrogel (CLARITY) technique, developed by Deisseroth's group14,15, as well as CUBIC, developed by Susaki et al16 are the most successful. Since the publication of the protocols, many researchers have started using these techniques to investigate various aspects of biological tissues, including, not only the brain22-25, but also the heart, kidneys, intestine, and the lungs26,27. 
By fixing the mouse spinal cord with the hydrogel solution (CLARITY) and clearing with the CUBIC reagents (which is a much faster method than that described by the original CLARITY protocol14,15), a spinal cord tissue block of 2-3 mm long was cleared within two weeks and immunofluorescence staining for serotonin completed in eight days. With just a combination of chemical agents, conventional immunohistochemistry can be used to create an image of individual fiber tracts in a 3D video file in approximately one month.

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			<td height="22" style="height:22px;width:495px;">Photoinitiator VA044</td>
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			<td style="width:807px;">http://www.wako-chem.co.jp/specialty/waterazo/VA-044.htm</td>
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			<td>Bio Rad</td>
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			<td>http://www.bio-rad.com/en-au/sku/161-0140-40-acrylamide-solution</td>
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			<td height="21" style="height:21px;">2% Bis Solution</td>
			<td>Bio Rad</td>
			<td>161-0142</td>
			<td>http://www.bio-rad.com/en-au/sku/161-0142-2-bis-solution?parentCategoryGUID=5e7a4f31-879c-4d63-ba0b-82556a0ccf1d</td>
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			<td>Sigma</td>
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			<td>http://www.sigmaaldrich.com/catalog/product/sial/158127?lang=en&#38;region=AU</td>
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			<td height="21" style="height:21px;">urea</td>
			<td>Merck Millipore</td>
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			<td>http://www.merckmillipore.com/AU/en/product/Urea---CAS-57-13-6---Calbiochem,EMD_BIO-66612</td>
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			<td height="21" style="height:21px;">N,N,N&#8217;,N&#8217;-tetrakis (2-hydroxypropyl) ethylenediamine</td>
			<td>Merck Millipore</td>
			<td align="right">821940</td>
			<td>http://www.merckmillipore.com/AU/en/product/Ethylenediamine-N,N,N&#39;,N&#39;-tetra-2-propanol,MDA_CHEM-821940</td>
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			<td height="21" style="height:21px;">Triton-X 100</td>
			<td>Merck Millipore</td>
			<td align="right">648462</td>
			<td>http://www.merckmillipore.com/AU/en/product/TRITON&#174;-X-100-Detergent---CAS-9002-93-1---Calbiochem,EMD_BIO-648462</td>
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			<td height="21" style="height:21px;">sucrose</td>
			<td>Sigma</td>
			<td>S0389</td>
			<td>http://www.sigmaaldrich.com/catalog/product/sigma/s0389?lang=en&#38;region=AU</td>
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			<td height="21" style="height:21px;">2,2&#8217;,2&#8217;&#8217;- nitrilotriethanol</td>
			<td>Merck Millipore</td>
			<td align="right">137002</td>
			<td>http://www.merckmillipore.com/AU/en/product/Triethanolamine-(Trolamine),MDA_CHEM-137022</td>
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			<td height="21" style="height:21px;">serotonin antibody</td>
			<td>Merck Millipore</td>
			<td>AB938</td>
			<td>http://www.merckmillipore.com/AU/en/product/Anti-Serotonin-Antibody,MM_NF-AB938</td>
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			<td height="21" style="height:21px;">goat anti rabbit IgG (H+L) Secondary Antibody, Alexa Fluor&#174; 594 conjugate</td>
			<td>Life Technologies</td>
			<td>&#160;A-11012</td>
			<td>https://www.lifetechnologies.com/order/genome-database/antibody/Rabbit-IgG-H-L-Secondary-Antibody-Polyclonal/A-11012</td>
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			<td height="21" style="height:21px;">multi-photon microscope</td>
			<td>Leica</td>
			<td>Leica TCS SP5 MP STED</td>
			<td>http://www.leica-microsystems.com/products/confocal-microscopes/details/product/leica-tcs-sp5-mp/</td>
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imaging serotonergic fibers in the mouse spinal cord using the clarity/cubic technique

omuriliğe uzun inen lifler lokomosyon, ağrının algılanması ve diğer davranışları için çok önemlidir. Bu lif sistemlerinin çoğunluğunun omurilik fiber sonlandırma desen iyice herhangi türde araştırılmamıştır. omurilik proje serotonerjik lifler, histolojik bölümlerde sıçanlar ve opossum incelenmiştir ve fonksiyonel önemi omurilikte kendi fiber sonlandırma desen çıkarılabilir dayanmaktadır. CLARITY ve KÜBİK tekniklerinin gelişmesiyle birlikte, lif sistemi ve serotonerjik supraspinal yolların önceden bilinmeyen özelliklerini ortaya çıkarmak için büyük olasılıkla omurilik dağıtımını, araştırmak mümkündür. Burada, kombine açıklık ve KÜP teknikleri kullanarak fare omurilik serotonerjik lifler görüntüleme için ayrıntılı bir protokol sağlar. yöntem combin ile doku hidrojel solüsyonu ve aydınlatılması ile bir fare perfüzyon gerektirirreaktifler temizleme tirme. Omurilik dokusu hemen altında iki hafta içinde temizlendi ve serotonin karşı sonraki immunofluorescent boyama az on gün içinde tamamlanmıştır. Bir çoklu foton floresan mikroskop ile, doku taranmış ve bir 3D görüntü OsiriX yazılımı kullanılarak yeniden inşa edildi.

Bu bölüm, açıklık ve KÜP protokollerin bir kombinasyonu kullanılarak şeffaf bir fare omurilik serotonin antikor boyama sonuçlarını gösterir. Biz (aynı zamanda Video 1 bakınız Şekil 1) serotonerjik lifler ventral boynuz ventral kısmında üstünlüğü ile omuriliğin tüm lamina mevcut olduğunu göstermektedir. kontrol doku pozitif lifler (sonuç gösterilen değil) yoktu. Ventral boynuz olarak, yoğun dolu serotonerjik lifler ventral b...

Watch this Scientific Journal Video about Imaging Serotonergic Fibers in the Mouse Spinal Cord Using the CLARITY/CUBIC Technique at JoVE.com

Imaging Serotonergic Fibers in the Mouse Spinal Cord Using the CLARITY/CUBIC Technique

Supraspinal projections are important for pain perception and other behaviors, and serotonergic fibers are one of these fiber systems. The present study focused on the application of the combined CLARITY/CUBIC protocol to the mouse spinal cord in order to investigate the termination of these serotonergic fibers.

Kullanımı Netlik Fare Omurilik içinde Serotonerjik Elyaf Görüntüleme / KÜBİK Tekniği

Long descending fibers to the spinal cord are essential for locomotion, pain perception, and other behaviors. The fiber termination pattern in the spinal ...

The overall goal of this CLARITY/CUBIC experiment is to reveal the 3D features of serotonergic fibers in the mouse spinal cord, which are not observable by traditional histology. This method can help answer key questions in the neuroanatomy field, such as how are serotonergic fibers distributed throughout the spinal cord? The main advantages of this technique are that it allows serotonergic fibers to be observed in situ, along with identification of vectors that are not observable by traditional histology.Although this method can provide insight into the organization of the central nervous system, it can also be applied to other systems, such as the cardiovascular system. We first sought to use this method when we reached limitations using a traditional tracing method to analyze serotonergic fibers in the mouse spinal cord. Begin by fixing the limbs of an anesthetized mouse to a plastic dissection stage in a fume hood.Confirm a lack of response to toe pinch and use a pair of scissors to open the skin over the chest. Next, open the chest to expose the heart and insert a 25 gauge needle attached to a peristaltic pump tubing into the left ventricle. Snip the right atrium to create an exit point for the blood.Then, wash the heart with 40 milliliters of 9 percent saline at approximately 10 milliliters per minute. When all of the blood has been flushed, perfuse the animal with 35 milliliters of freshly prepared, ice cold hydrogel at the same perfusion rate. Then, incise the skin over the back of the mouse and dissect the muscles nest to the vertebrae.After cutting the vertebral arches on one side and flipping them to the other, excise the spinal cord from the vertebral column with fine scissors. Immediately after harvesting, place the spinal cord in 15 milliliters of freshly prepared hydrogel solution overnight at four degrees Celsius. The next day, remove 10 milliliters of the hydrogel and pour the rest of the solution and spinal cord into a five milliliter tube.Add fresh hydrogel solution until the tube is full and then stretch a small piece of parafilm over the top of the tube, taking care that the parafilm contacts the hyrdogel and that there are no bubbles between the solution and the film. Removing air from the tube is the most difficult step. To make sure there are no bubbles, take care to fill the tube slowly with the hydrogel solution and then carefully place the parafilm across the top of the tube, without spilling the gel.Now, wrap a second piece of parafilm around the neck of the tube and incubate the spinal cord in a 37 degree Celsius oven overnight. When the hydrogel solution becomes a gel, use a spanner to remove the gel and neural tissue from the tube. To remove the hydrogel from the spinal cord, briefly press a course tissue against the gel.The gel will stick to the tissue as it is removed. When the spinal cord is clean, place it in PBS for four, six hour washes on a shaker. After 24 hours, use a razor blade to cut the spinal cord coronally into two to three millimeter long segments and transfer the tissue pieces into five milliliters of freshly prepared CUBIC clearing solution.Shake the pieces in the 37 degree Celsius oven for 72 hours and then replace the three day old clearing solution with freshly prepared clearing solution. Two to three days later, check the transparency of the tissue against the paper with font size 8 letters. When the letters can be observed through the cleared tissue, replace the CUBIC clearing solution with four milliliters of fresh PBST for four, six hour washes.To stain the spinal cord segments for fluorescent imaging, incubate the tissue in the appropriate primary antibody solution for three days on a shaker in the 37 degree Celsius oven. At the end of the primary antibody staining, immerse the tissue in four milliliters of PBST for four, six hour washes in the 37 degree Celsius oven. Then, replace the PBST with the appropriate secondary antibody solution for three more days on the shaker in the 37 degree Celsius oven.On the fourth day, wash away the unbound secondary antibody with PBST, as just demonstrated. To image the segments, replace the last PBST wash with four milliliters of 85 percent glycerol to make the refractive index of the tissue even. After about an hour, check the transparency of the tissue.When the tissue is clear, transfer the spinal cord segments on to a large, thin glass slide. Next, place a few drops of 85 percent glycerol next to the spinal cord tissue and cover the tissue with a 22 by 50 millimeter glass cover slip. Place the slide into the holding frame of the microscope and move the tissue into the light path.Then, select the Helium Neon laser and check the brightness of the positive signal in the live image to adjust the intensity of the laser. With the laser at the optimal intensity, use a 20x objective to select the scanning area of the spinal cord tissue. Then, set the instrument to create a z-stack with the depth of each stack at three microns.Finally, scan the tissue from the top to the bottom of the z-stack, first, under the 20x objective, followed by a z-stack scan under the 63x objective. 3D software can then be used to reconstruct the appropriate 3D videos. Here, the presence of serotonergic fibers in all of the laminae of the spinal cord, with a predominance in the ventral portion of the ventral horn, can be observed.In the ventral horn, densely packed serotonergic fibers are present in the ventral medial area, extending toward the lateral portion of the ventral horn, with some of the immunopositive fibers also extending from the ventral horn, toward the dorsal horn, or central canal. Immunopositive fibers are present in all of the laminae of the dorsal horn, but there is a small gap between the positive fibers in laminae two and four, particularly, in the lateral part of the dorsal horn. In a horizontal section, densely packed sertonergic fibers in ventral horn along the longitudinal axis of the spinal cord, can be observed issuing branches regularly along the axis perpendicular to the fiber bundle.These branches further diverge along their paths, to the lateral portion of the ventral horn. Compared with these branches, those extending toward the midline are more irregular and smaller. Under the 63x objective, the serotonergic fibers in the dorsal horn, are observed to travel along the axis of the spinal cord and to terminate at various points along the path of the tract with thick fibers, sporadically distributed among the thin fibers.Once mastered, this technique can be completed in less than three weeks, if it is performed properly. Following this procedure, other methods, like double labeling with choline acetyltransferase antibody, can be performed to answer additional questions about whether serotonergic fibers terminate motor neurons. After its development, this technique paved the way for researchers in the field of biomedical imaging to explore the complex spatial relationships between various cell types in animal specimens or human tissues.After watching this video, you should have a good understanding of how to clarify the mouse spinal cord tissue for 3D imaging after immunofluorescent staining.

Research

JoVE Journal

Neuroscience

Spinal Cord Electrophysiology II: Extracellular Suction Electrode Fabrication

Omurilik Elektrofizyoloji II: Ekstrasellüler Emiş Elektrot İmalatı

Development of neural circuitries and locomotion can be studied using neonatal rodent spinal cord central pattern generator (CPG) behavior. We demonstrate ...

Nörobilim

In vivo Imaging of the Mouse Spinal Cord Using Two-photon Microscopy

In vivo Imaging of the Mouse Spinal Cord Using Two-photon Microscopy

Fare Omurilik İki foton Mikroskop kullanarak in vivo Görüntüleme

In vivo imaging using two-photon microscopy 1 in mice that have been genetically engineered to express fluorescent proteins in specific cell types 2-3 has ...

Spinal Cord Transection in the Larval Zebrafish

Larva Zebra balığı Omurilik Kesisi

Mammals fail in sensory and motor recovery following spinal cord injury due to lack of axonal regrowth below the level of injury as well as an inability ...

A Procedure for Implanting a Spinal Chamber for Longitudinal In Vivo Imaging of the Mouse Spinal Cord

A Procedure for Implanting a Spinal Chamber for Longitudinal In Vivo Imaging of the Mouse Spinal Cord

Boyuna için bir Spinal Odası implantasyon için bir Prosedürü<em&gt; İn Vivo</em&gt; Fare Omurilik Görüntüleme

Studies in the mammalian neocortex have enabled unprecedented resolution of cortical structure, activity, and response to neurodegenerative insults by ...

Diffusion Imaging in the Rat Cervical Spinal Cord

Sıçan Servikal Spinal Kord difüzyon Görüntüleme

Magnetic resonance imaging (MRI) is the state of the art approach for assessing the status of the spinal cord noninvasively, and can be used as a ...

Two-photon Imaging of Cellular Dynamics in the Mouse Spinal Cord

Fare Omurilik Hücresel Dynamics İki foton Görüntüleme

Two-photon (2P) microscopy is utilized to reveal cellular dynamics and interactions deep within living, intact tissues. Here, we present a method for ...

Imaging Neural Activity in the Primary Somatosensory Cortex Using Thy1-GCaMP6s Transgenic Mice

Imaging Neural Activity in the Primary Somatosensory Cortex Using Thy1-GCaMP6s Transgenic Mice

Sinirsel aktivite Thy1kullanarak birincil somatosensor kortekste Imaging-GCaMP6s transgenik fareler

The mammalian brain exhibits marked symmetry across the sagittal plane. However, detailed description of neural dynamics in symmetric brain regions in ...

Laminectomy and Spinal Cord Window Implantation in the Mouse

Farede Laminektomi ve Omurilik Penceresi İmplantasyonu

This protocol describes a method for spinal cord laminectomy and glass window implantation for in vivo imaging of the mouse spinal cord. An integrated ...

Diffusion Tensor Magnetic Resonance Imaging in Chronic Spinal Cord Compression

Kronik omurilik kompresyonu difüzyon tensor manyetik rezonans görüntüleme

Chronic spinal cord compression is the most common cause of spinal cord impairment in patients with nontraumatic spinal cord damage. Conventional magnetic ...

Intra-Arterial Delivery of Neural Stem Cells to the Rat and Mouse Brain: Application to Cerebral Ischemia

Nöral Kök Hücrelerin Sıçan ve Fare Beynine İntra-Arteriyel Teslimatı: Serebral İskemiye Uygulama

Neural stem cell (NSC) therapy is an emerging innovative treatment for stroke, traumatic brain injury and neurodegenerative disorders. As compared to ...