Chris Bailey-Kellogg

A subgroup algorithm to identify cross-rotation peaks consistent with non-crystallographic symmetry.

Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure.

Analysis of sequence-reactivity space for protein-protein interactions.

A random graph approach to NMR sequential assignment.

Reconsidering complete search algorithms for protein backbone NMR assignment.

An efficient randomized algorithm for contact-based NMR backbone resonance assignment.

Functional evolution within a protein superfamily.

Model-based assignment and inference of protein backbone Nuclear Magnetic Resonances.

Site-directed combinatorial construction of chimaeric genes: general method for optimizing assembly of gene fragments.

Inferential backbone assignment for sparse data.

Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing.

A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo-oligomers.

Hypergraph model of multi-residue interactions in proteins: sequentially-constrained partitioning algorithms for optimization of site-directed protein recombination.

Algorithms for selecting breakpoint locations to optimize diversity in protein engineering by site-directed protein recombination.

Robotic hierarchical mixing for the production of combinatorial libraries of proteins and small molecules.

Analysis of self-associating proteins by singular value decomposition of solution scattering data.

Graphical models of residue coupling in protein families.

Contact replacement for NMR resonance assignment.

Graphical models of protein-protein interaction specificity from correlated mutations and interaction data.

Optimizing Bayes error for protein structure model selection by stability mutagenesis.

Protein design by sampling an undirected graphical model of residue constraints.

Algorithms for joint optimization of stability and diversity in planning combinatorial libraries of chimeric proteins.

Protein fragment swapping: a method for asymmetric, selective site-directed recombination.

Optimization algorithms for functional deimmunization of therapeutic proteins.

Characterizing the space of interatomic distance distribution functions consistent with solution scattering data.

Accounting for conformational entropy in predicting binding free energies of protein-protein interactions.

A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers.

Optimization of therapeutic proteins to delete T-cell epitopes while maintaining beneficial residue interactions.

NMR structural inference of symmetric homo-oligomers.

Optimization of combinatorial mutagenesis.

A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.

Planning combinatorial disulfide cross-links for protein fold determination.

A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments.

MMFPh: a maximal motif finder for phosphoproteomics datasets.

Algorithms for optimizing cross-overs in DNA shuffling.

Rapid determination of multiple linear kinase substrate motifs by mass spectrometry.

Design and analysis of immune-evading enzymes for ADEPT therapy.

High-throughput, multiplexed IgG subclassing of antigen-specific antibodies from clinical samples.

Structure-based redesign of proteins for minimal T-cell epitope content.

Ballast: a ball-based algorithm for structural motifs.

Structure-guided deimmunization of therapeutic proteins.

Natural variation in Fc glycosylation of HIV-specific antibodies impacts antiviral activity.

The two-faced T cell epitope: examining the host-microbe interface with JanusMatrix.

Bayesian reconstruction of P(r) directly from two-dimensional detector images via a Markov chain Monte Carlo method.

Improved Multiple Sequence Alignments Using Coupled Pattern Mining.

Divergent Antibody Subclass and Specificity Profiles but Not Protective HLA-B Alleles Are Associated with Variable Antibody Effector Function among HIV-1 Controllers.

Improved multiple sequence alignments using coupled pattern mining.

Gene and protein sequence optimization for high level production of fully active and aglycosylated lysostaphin in Pichia pastoris.

Polyfunctional Fc-Effector Profiles Mediated by IgG Subclass Selection Distinguish RV144 and VAX003 Vaccines.