Koichi Kawakami

A novel perivascular cell population in the zebrafish brain.

The complexity of alternative splicing of hagoromo mRNAs is increased in an explosively speciated lineage in East African cichlids.

Fugu ESTs: new resources for transcription analysis and genome annotation.

Transposition of the Tol2 element, an Ac-like element from the Japanese medaka fish Oryzias latipes, in mouse embryonic stem cells.

A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish.

Excision of the Tol2 transposable element of the medaka fish Oryzias latipes in Xenopus laevis and Xenopus tropicalis.

Transgenesis and gene trap methods in zebrafish by using the Tol2 transposable element.

The zebrafish pob gene encodes a novel protein required for survival of red cone photoreceptor cells.

Transposon tools and methods in zebrafish.

Transposon-mediated gene trapping in zebrafish.

Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition.

The Fugu tyrp1 promoter directs specific GFP expression in zebrafish: tools to study the RPE and the neural crest-derived melanophores.

Nodal signals mediate interactions between the extra-embryonic and embryonic tissues in zebrafish.

A cardiac myosin light chain kinase regulates sarcomere assembly in the vertebrate heart.

Tol2: a versatile gene transfer vector in vertebrates.

Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like.

Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish.

Misty somites, a maternal effect gene identified by transposon-mediated insertional mutagenesis in zebrafish that is essential for the somite boundary maintenance.

Targeted gene expression by the Gal4-UAS system in zebrafish.

G2R Cre reporter transgenic zebrafish.

Transposition of the vertebrate Tol2 transposable element in Drosophila melanogaster.

Efficient transposition of the Tol2 transposable element from a single-copy donor in zebrafish.

Afferent neurons of the zebrafish lateral line are strict selectors of hair-cell orientation.

Mechanism of development of ionocytes rich in vacuolar-type H(+)-ATPase in the skin of zebrafish larvae.

Transient and stable transgenesis using tol2 transposon vectors.

Analysis of genes and genome by the tol2-mediated gene and enhancer trap methods.

Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish.

Transgenesis in zebrafish with the tol2 transposon system.

Developmental toxicity and brain aromatase induction by high genistein concentrations in zebrafish embryos.

A combination of transposable elements and magnetic cell sorting provides a very efficient transgenesis system for chicken primary erythroid progenitors.

Dynamic coupling of pattern formation and morphogenesis in the developing vertebrate retina.

Transposon-mediated BAC transgenesis in zebrafish and mice.

The Tol2-mediated Gal4-UAS method for gene and enhancer trapping in zebrafish.

Estrogen-responsive transient expression assay using a brain aromatase-based reporter gene in zebrafish (Danio rerio).

Illuminating cell-cycle progression in the developing zebrafish embryo.

Sleep-wake regulation and hypocretin-melatonin interaction in zebrafish.

Mys protein regulates protein kinase A activity by interacting with regulatory type Ialpha subunit during vertebrate development.

Interaction with surrounding normal epithelial cells influences signalling pathways and behaviour of Src-transformed cells.

Real-time monitoring of circadian clock oscillations in primary cultures of mammalian cells using Tol2 transposon-mediated gene transfer strategy.

Development of the circadian oscillator during differentiation of mouse embryonic stem cells in vitro.

A simple and highly efficient transgenesis method in mice with the Tol2 transposon system and cytoplasmic microinjection.

Comparative analysis of transposable element vector systems in human cells.

Identification and characterization of alternative promoters of zebrafish Rtn-4/Nogo genes in cultured cells and zebrafish embryos.

Simultaneous expression of different transgenes in neurons and glia by combining in utero electroporation with the Tol2 transposon-mediated gene transfer system.

Mib-Jag1-Notch signalling regulates patterning and structural roles of the notochord by controlling cell-fate decisions.

Sex reversal in zebrafish fancl mutants is caused by Tp53-mediated germ cell apoptosis.

A transgenic zebrafish for monitoring in vivo microtubule structures.

Transient inflammatory response mediated by interleukin-1β is required for proper regeneration in zebrafish fin fold.

zTrap: zebrafish gene trap and enhancer trap database.

Nitro-fatty acids and cyclopentenone prostaglandins share strategies to activate the Keap1-Nrf2 system: a study using green fluorescent protein transgenic zebrafish.

Genetic visualization with an improved GCaMP calcium indicator reveals spatiotemporal activation of the spinal motor neurons in zebrafish.

Formation of the spinal network in zebrafish determined by domain-specific pax genes.

Generating libraries of iTol2-end insertions at BAC ends using loxP and lox511 Tn10 transposons.

Tol2-mediated transgenesis, gene trapping, enhancer trapping, and the Gal4-UAS system.

Neuron and sensory epithelial cell fate is sequentially determined by Notch signaling in zebrafish lateral line development.

Connexin 39.9 protein is necessary for coordinated activation of slow-twitch muscle and normal behavior in zebrafish.

An mnr2b/hlxb9lb enhancer trap line that labels spinal and abducens motor neurons in zebrafish.

Transposon-mediated BAC transgenesis in zebrafish.

Transgenic line with gal4 insertion useful to study morphogenesis of craniofacial perichondrium, vascular endothelium-associated cells, floor plate, and dorsal midline radial glia during zebrafish development.

Neuronal birth order identifies a dimorphic sensorineural map.

Mixture of differentially tagged Tol2 transposons accelerates conditional disruption of a broad spectrum of genes in mouse embryonic stem cells.

Efficient genetic modification and germ-line transmission of primordial germ cells using piggyBac and Tol2 transposons.

Functional assessment of human coding mutations affecting skin pigmentation using zebrafish.

Real-time visualization of neuronal activity during perception.

Innervation is required for sense organ development in the lateral line system of adult zebrafish.

Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.

Differential role for transcription factor Oct4 nucleocytoplasmic dynamics in somatic cell reprogramming and self-renewal of embryonic stem cells.

Haemodynamically dependent valvulogenesis of zebrafish heart is mediated by flow-dependent expression of miR-21.

Cellular dissection of the spinal cord motor column by BAC transgenesis and gene trapping in zebrafish.

Prey capture in zebrafish larvae serves as a model to study cognitive functions.

Development of cerebellar neurons and glias revealed by in utero electroporation: Golgi-like labeling of cerebellar neurons and glias.

The PCP protein Vangl2 regulates migration of hindbrain motor neurons by acting in floor plate cells, and independently of cilia function.

The parallel growth of motoneuron axons with the dorsal aorta depends on Vegfc/Vegfr3 signaling in zebrafish.

Different combinations of Notch ligands and receptors regulate V2 interneuron progenitor proliferation and V2a/V2b cell fate determination.

Involvement of androgen receptor in sex determination in an amphibian species.

Development of the lateral line canal system through a bone remodeling process in zebrafish.

Co-option of Sox3 as the male-determining factor on the Y chromosome in the fish Oryzias dancena.

The development and growth of tissues derived from cranial neural crest and primitive mesoderm is dependent on the ligation status of retinoic acid receptor γ: evidence that retinoic acid receptor γ functions to maintain stem/progenitor cells in the absence of retinoic acid.

Establishment of Gal4 transgenic zebrafish lines for analysis of development of cerebellar neural circuitry.

RING finger protein 121 facilitates the degradation and membrane localization of voltage-gated sodium channels.

Size control during organogenesis: Development of the lateral line organs in zebrafish.

Deubiquitinating enzymes regulate Hes1 stability and neuronal differentiation.

Neuregulin 1 Type II-ErbB Signaling Promotes Cell Divisions Generating Neurons from Neural Progenitor Cells in the Developing Zebrafish Brain.

High-resolution live imaging reveals axon-glia interactions during peripheral nerve injury and repair in zebrafish.

Deletion of a kinesin I motor unmasks a mechanism of homeostatic branching control by neurotrophin-3.

BAC transgenic zebrafish reveal hypothalamic enhancer activity around obesity associated SNP rs9939609 within the human FTO gene.

Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions.

Stable and bicistronic expression of two genes in somite- and lateral plate-derived tissues to study chick limb development.

Neuromuscular regulation in zebrafish by a large AAA+ ATPase/ubiquitin ligase, mysterin/RNF213.

Endothelial Ca 2+ oscillations reflect VEGFR signaling-regulated angiogenic capacity in vivo.

Chromatin-prebound Crm1 recruits Nup98-HoxA9 fusion to induce aberrant expression of Hox cluster genes.

CSF-contacting neurons regulate locomotion by relaying mechanical stimuli to spinal circuits.

Cellular dynamics of regeneration reveals role of two distinct Pax7 stem cell populations in larval zebrafish muscle repair.

Zebrafish lines expressing UAS-driven red probes for monitoring cytoskeletal dynamics.

Visualization of Neuregulin 1 ectodomain shedding reveals its local processing in vitro and in vivo.

Fgf signalling controls diverse aspects of fin regeneration.

Fluorescence-Activated Cell Sorting and Gene Expression Profiling of GFP-Positive Cells from Transgenic Zebrafish Lines.

Calcium Imaging of Neuronal Activity in Free-Swimming Larval Zebrafish.

Optimization of a Neurotoxin to Investigate the Contribution of Excitatory Interneurons to Speed Modulation In Vivo.

Stereotyped initiation of retinal waves by bipolar cells via presynaptic NMDA autoreceptors.

Erratum.

Calcium dysregulation contributes to neurodegeneration in FTLD patient iPSC-derived neurons.

Motile-Cilia-Mediated Flow Improves Sensitivity and Temporal Resolution of Olfactory Computations.

Glycine-alanine dipeptide repeat protein contributes to toxicity in a zebrafish model of C9orf72 associated neurodegeneration.

Left Habenula Mediates Light-Preference Behavior in Zebrafish via an Asymmetrical Visual Pathway.

Proteolysis regulates cardiomyocyte maturation and tissue integration.

Activation of the hypothalamic feeding centre upon visual prey detection.

Analysis of transcription factors expressed at the anterior mouse limb bud.

Preface to Vertebrate Brains: evolution, structures and functions.

Activin-A enhances mTOR signaling to promote aberrant chondrogenesis in fibrodysplasia ossificans progressiva.

Transposons As Tools for Functional Genomics in Vertebrate Models.

Granule cells control recovery from classical conditioned fear responses in the zebrafish cerebellum.

defines a wound-specific sheath cell subpopulation associated with notochord repair.

Structure/Function Studies of the α4 Subunit Reveal Evolutionary Loss of a GlyR Subtype Involved in Startle and Escape Responses.

Epidermal regulation of bone morphogenesis through the development and regeneration of osteoblasts in the zebrafish scale.

A novel zebrafish intestinal tumor model reveals a role for -dependent tumor-liver crosstalk in causing adverse effects on the host.

Identification of a neuronal population in the telencephalon essential for fear conditioning in zebrafish.

A new mode of pancreatic islet innervation revealed by live imaging in zebrafish.

Protocadherin-Mediated Cell Repulsion Controls the Central Topography and Efferent Projections of the Abducens Nucleus.

A tRNA-based multiplex sgRNA expression system in zebrafish and its application to generation of transgenic albino fish.

Mutant KCNJ3 and KCNJ5 Potassium Channels as Novel Molecular Targets in Bradyarrhythmias and Atrial Fibrillation.

Six6 and Six7 coordinately regulate expression of middle-wavelength opsins in zebrafish.

De novo assembly of the goldfish () genome and the evolution of genes after whole-genome duplication.

Neural signatures of sleep in zebrafish.

Shootins mediate collective cell migration and organogenesis of the zebrafish posterior lateral line system.

Glia-neuron interactions underlie state transitions to generalized seizures.

The First International Zebrafish Conference/Workshop in Qatar.

Pattern of fin rays along the antero-posterior axis based on their connection to distal radials.

A bidirectional network for appetite control in larval zebrafish.

Reactivation of Notch signaling is required for cardiac valve regeneration.

Optogenetic modulation of TDP-43 oligomerization accelerates ALS-related pathologies in the spinal motor neurons.

A virtual reality system to analyze neural activity and behavior in adult zebrafish.

Gastrointestinal Neurons Expressing HCN4 Regulate Retrograde Peristalsis.

Chondroitin sulfate proteoglycan 4 regulates zebrafish body axis organization via Wnt/planar cell polarity pathway.

The Genetic Basis of Morphological Diversity in Domesticated Goldfish.

Transient and lineage-restricted requirement of Ebf3 for sternum ossification.

Zebrafish can regenerate endoskeleton in larval pectoral fin but the regenerative ability declines.

Proteasome subunit PSMC3 variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress.

Development of the anterior lateral line system through local tissue-tissue interactions in the zebrafish head.

Neuronal Circuits That Control Rhythmic Pectoral Fin Movements in Zebrafish.

Non-thalamic origin of zebrafish sensory nuclei implies convergent evolution of visual pathways in amniotes and teleosts.

Gsx2 is required for specification of neurons in the inferior olivary nuclei from Ptf1a-expressing neural progenitors in zebrafish.

Muscle defects due to perturbed somite segmentation contribute to late adult scoliosis.

Do not curse the darkness of the spinal cord, light TDP-43.

Neural circuitry for stimulus selection in the zebrafish visual system.

The enteric nervous system in zebrafish larvae can regenerate via migration into the ablated area and proliferation of neural crest-derived cells.

Pyramidal Neurons of the Zebrafish Tectum Receive Highly Convergent Input From Torus Longitudinalis.

Multi-phaseted problems of TDP-43 in selective neuronal vulnerability in ALS.

Illuminating ALS Motor Neurons With Optogenetics in Zebrafish.

Haploinsufficiency of PRR12 causes a spectrum of neurodevelopmental, eye, and multisystem abnormalities.

Involvement of Cerebellar Neural Circuits in Active Avoidance Conditioning in Zebrafish.

Electrophysiological and pharmacological characterization of spreading depolarization in the adult zebrafish tectum.

A novel gene trap line for visualization and manipulation of erbb3b neural crest and glial cells in zebrafish.