This work received no specific grant from any funding agency in the public, commercial, or not-for-profit sectors.

All studies were approved by the Institutional Animal Care and Use Committee at Washington University School of Medicine. Animals received humane care in compliance with the Guide for the care and use of laboratory animals, 8th edition21 prepared by the National Academy of Sciences and published by the National Institutes of Health, and the Principles of laboratory animal care formulated by the National Society for Medical Research.
1. Anesthesia and intubation
<ol>
	<li>Select a mouse that weighs at least 25 g. This will facilitate easier intubation due to the larger orifice between the vocal cords.</li>
	<li>Inject the mouse intraperitoneally with a mixture of ketamine (dose 100 mg/kg of body weight) and xylazine (dose 10 mg/kg of body weight). This mixture should be loaded into a &#189; cc syringe with a &#189; inch 29G needle. Wait about 5 min for ketamine to take effect - the mouse should not exhibit spontaneous movement and does not respond to a toe pinch, which confirms adequate anesthesia.</li>
	<li>Inject buprenorphine (dose 0.05 mg/kg of body weight) subcutaneously prior to surgery for additional pain control.</li>
	<li>Apply non-medicated ophthalmic ointment over both eyes to avoid corneal desiccation during surgery.</li>
	<li>Shave the mouse with a clipper over the left chest and back (see Figure 1A), extending onto the abdomen if laparotomy is planned (see step 5.3).</li>
	<li>Once the mouse is anesthetized, perform the intubation using a preferred intubation set-up and the remainder of the procedure under a microscope over a warmed mat at ~37 &#176;C (to maintain normothermia in the mouse).</li>
	<li>After achieving an adequate view of the vocal cords, insert a homemade introducer (see Supplementary Figure 1) with a curve on the end into a 1-inch 20G angiocatheter, which is used as the endotracheal tube (ETT). Guide the tip of the introducer and then the ETT between and past the vocal cords. 
	NOTE: It is important to visualize the ETT going through the vocal cords to avoid false intubation into the esophagus. Care should be taken to avoid injury to the vocal cords during intubation (i.e., the number of attempts of intubation should be limited to 5 and the ETT should not be advanced if resistance is met).</li>
	<li>Once the ETT is inserted, remove the introducer, and connect the ETT to a small animal ventilator. Observe for symmetric chest rise to confirm correct endotracheal intubation. The ventilator settings should be 100-105 breaths per minute and fraction of inspired oxygen of 100%. Tidal volume is 0.35 mL and positive end-expiratory pressure is 1 cm H2O. 
	NOTE: Ensure that the chest rather than abdomen is rising as accidental esophageal intubation will lead to death if not promptly corrected.</li>
	<li>Once confirmed to be in position, secure the ETT with a 5 cm strip of 1 inch silk tape around the mouse nose, ensuring&#160;adequate contact with the ETT and nose so that the ETT will not slide out of the mouth (see Figure 1B-C).</li>
	<li>To maintain adequate anesthesia throughout the surgery, administer 1%-1.5% isoflurane in-line with the oxygen flow.</li>
</ol>
2. Thoracotomy
<ol>
	<li>Position the mouse in right lateral decubitus position, with both front paws taped to the top left corner, the right hind paw taped to the bottom left corner, and the left hind paw taped to the bottom right corner (see Figure 2G for taping).</li>
	<li>Disinfect with skin over the left chest with at least 3 alternating rounds of povidone iodine followed by 70% alcohol application.</li>
	<li>Perform an incision over the 4th intercostal space from the anterior axillary line to the posterior axillary line, using scissors to open the overlying skin (see Figure 2A). The 4th intercostal space is located approximately 1 cm below the axilla in the mid-axillary line.</li>
	<li>To minimize blood loss, coagulate visible blood vessels within the subcutaneous and muscle layers using a handheld cautery pen.</li>
	<li>Divide the latissimus dorsi and serratus anterior muscles sharply using scissors along the length of the skin incision (see Figure 2B).</li>
	<li>Using fine curved forceps, carefully elevate the 4th rib (taking care not to injure the underlying lung) and make a pinpoint snip with fine scissors just above the 5th rib to enter the 4th intercostal space (see Figure 2C). Perform the thoracotomy above the 5th rib rather than below the 4th rib to avoid injuring the intercostal neurovascular bundle.</li>
	<li>Once the negative pleural cavity pressure is lost and the lung retracts away from the chest wall, extend the thoracotomy anteriorly and posteriorly in the 4th intercostal space just above the 5th rib (see Figure 2D-E). The entire length of the incision should be long enough to expose the entire lung, usually ~1 cm. 
	NOTE: Internal mammary artery bleeding can occur if the thoracotomy is extended too far anteriorly - if encountered, this should be cauterized to avoid excessive blood loss.</li>
	<li>Apply two rib retractors to spread open the rib space, allowing for a working window of at least 1 cm2 for adequate visualization (see Figure 2F-G).</li>
</ol>
3. Application of hilar clamp
<ol>
	<li>Using two-pointed cotton-tipped applicators, mobilize the left lung by elevating it cephalad and then bluntly dividing the translucent inferior pulmonary ligament (see Figure 3A-B). 
	NOTE: If this is challenging to perform without tearing the lung, the inferior pulmonary ligament can also be divided sharply using fine scissors.</li>
	<li>Reflect the lung anteriorly so that the posterior left pulmonary hilum can be visualized. Cut a piece of 6-0 silk tie to ~10 cm and place the midpoint of this tie posterior to the hilum (see Figure 3C).</li>
	<li>Then, flip the left lung posteriorly to lay over the tie and pull both ends of the tie anteriorly (see Figure 3D).</li>
	<li>With the two free ends (A and B) of the tie, instrument-tie a reversible slipknot with forceps and a curved mosquito clamp. See detailed description in steps 3.4.1 and 3.4.2. The warm ischemic time starts upon tying of the slipknot. The left lung should no longer be inflating with each ventilator breath once the knot is tied. It should become pale white implying cessation of perfusion. 
	NOTE: Care should be taken to make sure the knot sits in the middle of the hilum, avoiding inadvertently snaring the left atrium centrally and the lung parenchyma laterally (see Figure 3F).
	<ol>
		<li>With the clamp in the dominant hand and forceps in the non-dominant hand, hold the end of A with forceps and loop the midpoint of A around the closed clamp once (see Figure 3E).</li>
		<li>Grasp the midpoint of B with the clamp and pull with both hands to cinch the slipknot. Do not let the end of B pull through the knot, which would render the knot irreversible. After tying the knot, B should have a loop emanating from the knot, while A should be straight (see Figure 3F). The knot can be released by pulling the end of B.</li>
	</ol>
	</li>
	<li>Confirm adequate occlusion of the bronchus by manually occluding the outflow tubing from the ETT to the ventilator, which should cause the left lung to not inflate (see Figure 3G). Vascular occlusion is assumed with bronchial occlusion given the increased collapsibility of the pulmonary artery and veins compared to the cartilaginous bronchus.</li>
	<li>After application of the hilar clamp, close the skin incision with one simple interrupted stitch using 6-0 nylon suture, to minimize insensible fluid losses during the period of warm ischemia.</li>
</ol>
4. Release of hilar clamp
<ol>
	<li>After the desired period of warm ischemia, release the slipknot by gently pulling on the short free end of the silk tie (B from Figure 3F and step 3.4). Start the reperfusion time upon release of the slipknot. 
	NOTE: Following release of the tie, lung ventilation can be confirmed by again manual occlusion of the outflow of the ETT, which should now cause expansion of the left lung. Again, perfusion is implied with inflation of the lung, however, it can also be confirmed by the lung pinking up (see Figure 4A).</li>
	<li>During the reperfusion period, close the chest in three layers to minimize insensible losses. First, close the 4th rib space with a single stitch with 6-0 nylon suture, with one bite just above the 4th rib and one bite just above the 6th rib (see Figure 4B-C). Tie this at maximum lung inflation, to minimize risk of an iatrogenic pneumothorax (see Figure 4D-E).</li>
	<li>Next, close the muscle layer using a simple running stitch with 6-0 nylon suture.</li>
	<li>Finally, close the skin incision with a simple interrupted stitch with 6-0 nylon suture (see Figure 4F). Avoid running stitches on the skin due to the risk of awake animals picking at their incision and leading to complete wound dehiscence.</li>
	<li>From this point, the lung can be directly harvested at the end of the desired reperfusion time. If ABG evaluation is desired, see step 5. If additional intravenous injection is desired prior to sacrifice, see step 6. This is a terminal surgery.</li>
	<li>If reperfusion time is intended to be greater than a couple of hours, turn off the isoflurane to allow the mouse to awaken from anesthesia and extubate. Extubation criteria include twitching with paw pinch and spontaneous respirations and movement. Waking a mouse from ketamine and isoflurane anesthesia typically takes 30-45 min. This is a survival surgery.
	<ol>
		<li>For survival surgery, inject 1 mL of warm saline subcutaneously to account for fluid losses from surgery. Inject buprenorphine (dose 0.05 - 0.1 mg/kg of body weight) subcutaneously prior to surgery for pain control. Repeat anesthesia every 4-6 h&#160;for at least 3 days after surgery. Consider a bupivacaine block along the incision for additional pain control.</li>
	</ol>
	</li>
</ol>
5. ABG evaluation
NOTE: If ABG measurement is desired, this is best obtained via arterial blood aspiration from the left ventricle. To ascertain that the ABG reflects only left lung function, this arterial blood should be obtained after about 4 min of the right hilum being clamped22,23, during which time only the left lung is performing oxygenation and ventilation.
<ol>
	<li>If the mouse has been awoken from anesthesia after hilar clamp, re-anesthetize and intubate the mouse according to step 1.</li>
	<li>About 15-20 min prior to the end of the desired reperfusion time, position the mouse supine, securing all four limbs with tape. 
	NOTE: Ample time should be allotted for the following steps to be performed prior to the end of reperfusion. Specific timing to open the abdomen and chest will vary depending on the surgeon and their experience.</li>
	<li>Perform midline laparotomy from pubic bone to xiphoid, incising with scissors the skin followed by the abdominal wall along the linea alba (see Figure 5A-B).</li>
	<li>At the xiphoid, extend the laparotomy left and right to the anterior axillary line, following the curve of the inferior-most rib (see Figure 5C).</li>
	<li>From the abdomen, incise the anterior diaphragm in the midline to enter the chest, taking care not to go too deep to avoid injuring the heart (see Figure 5D-E). Then, extend the anterior diaphragm incision left and right to the anterior axillary line, along the inferior-most rib (see white dotted line in Figure 5D).</li>
	<li>Divide the bilateral ribs along the anterior axillary line, extending upwards towards the axilla, to create a clamshell thoracotomy. Then, reflect the anterior chest wall (sternum and bilateral anterior ribs) cephalad, which allows for full exposure of the heart and bilateral lungs (see white dotted lines in Figure 5F).</li>
	<li>Apply a clamp onto the anterior chest wall that is flipped cephalad to facilitate retraction. Retract the diaphragm downward with a curved mosquito clamp in the midline to improve visualization of the chest (see Figure 5F).</li>
	<li>To fully mobilize the right lung (which has 4 lobes), return the accessory lobe that extends past midline into the left chest back into the right chest (see Figure 5G-H). There is a thin ligament attaching this lobe to the left chest - divide this either bluntly with cotton-tipped applicators or sharply with scissors. 
	NOTE: This accessory lobe crosses the midline posterior to the inferior vena cava (IVC), so care must be taken not to injure the IVC during this maneuver.</li>
	<li>Once all lobes are returned to the right chest, reflect the entire right lung anteriorly and place another 6-0 silk tie (cut to ~10 cm) posterior to the right hilum. Then, replace the right lung back into the chest over the tie.</li>
	<li>Tie another slipknot around the right hilum using the same technique as described in step 3.4, taking care to encircle all four lobes of the right lung. This right hilar clamp step should be timed to be approximately 4 min prior to the end of reperfusion.</li>
	<li>Coat a &#189; inch 31G needle on a 1 cc tuberculin syringe with about 200 &#181;L of heparin 1000 unit/mL. To do this, draw up the volume of heparin and repeatedly pull the plunger back and forth 3-4 times to allow for the heparin to coat the entire inside of the syringe. This is done to minimize the risk of aspirated blood coagulating during transport from the surgical station to the ABG machine .</li>
	<li>After 4 min of right hilar clamping, aspirate arterial blood from the left ventricle into the heparin-coated syringe (see Figure 5I). Take care to avoid puncturing the ventricular septum and inadvertently aspirating venous right ventricular blood. There is a clear color difference between the darker right ventricle and brighter left ventricle (see Figure 5I inset). Angle the needle toward the left neck. Multiple punctures may be required to obtain sufficient blood to run an ABG (~150 &#181;L). 
	NOTE: During the 4 min of right hilar clamp, the mouse may start to exhibit agonal breathing which heralds impending death. If this occurs, arterial blood should be expeditiously aspirated prior to cardiac arrest. It is not possible to aspirate blood from a non-beating heart.</li>
	<li>Run the arterial blood on an ABG machine to obtain oxygen saturation, partial pressure of oxygen, partial pressure of carbon dioxide, among other measurements. Euthanize the mouse after ABG collection and/or antibody treatment (see step 6).</li>
</ol>
6. Intravenous antibody injection for measurement of cell extravasation
NOTE: This technique can be used to determine cell extravasation via injection of fluorochrome-labelled antibodies intravenously into the IVC prior to sacrifice followed by flow cytometric analysis, as previously published18. In brief, intravascular neutrophils can be distinguished from interstitial neutrophils using neutrophil specific anti-Ly6G antibodies. Fluorescein isothiocyanate-labelled (FITC-labeled) anti-Ly6G (clone 1A8) is injected intravenously 5 minutes prior to sacrifice, which labels the circulating intravascular neutrophils. The concentration of FITC-Ly6G antibody used is 100 ng diluted in 200 &#181;L of phosphate-buffered saline. Then, after preparation of single cell suspension from the left lung for flow cytometry, all neutrophils are labeled with allophycocyanin-labeled (APC-labeled) anti-Ly6G (clone 1A8). Thus, APC-Ly6G+FITC-Ly6G+ neutrophils are intravascular while APC-Ly6G+FITC-Ly6G- are extravascular or interstitial. This technique can be adapted to monocytes with anti-Ly6C antibodies, B cells with anti-CD19 antibodies, for example.
<ol>
	<li>Load the desired antibody into a 3/10 cc syringe with 5/16 inch 31G needle, taking care to minimize air bubbles within the syringe. Use this for intravenous injection into the IVC in step 6.5.</li>
	<li>Perform laparotomy according to steps 5.3-5.4.</li>
	<li>Following laparotomy, perform right medial visceral rotation bluntly using two pointed-cotton-tipped applicators. In a mouse, this is done by eviscerating all the bowel to the left of the abdomen, which will allow a clear view of the IVC (see Figure 6A).</li>
	<li>Clear the fat overlying the IVC bluntly with cotton-tipped applicators.</li>
	<li>Inject the antibody solution into the IVC via venipuncture (see Figure 6B). Upon extraction of the needle, immediately apply gentle pressure with a cotton swab to the site of venipuncture until it is hemostatic (usually about 2-3 min).</li>
	<li>Return the eviscerated bowel into the abdomen over the cotton swab to continue to apply pressure over the IVC (see Figure 6C).</li>
	<li>Perform clamshell thoracotomy according to steps 5.5-5.7 to harvest the left lung. Allow the antibodies to have at least 5 min to circulate systemically prior to sacrifice and harvest. Euthanize the mouse after ABG collection and/or antibody treatment.</li>
</ol>
7. Histology (H&#38;E) staining
<ol>
	<li>Following formalin-fixation and paraffin-embedding of the left lung and sectioning to a thickness of 5 &#181;m, deparaffinize the slide in xylene (two 10 min washes).</li>
	<li>Dehydrate in sequential ethanol washes: 2x 5&#160;min washes with 100%, 1x 2 min wash with 95%, and 1x 2 min wash with 70% ethanol. Then, rinse in deionized water.</li>
	<li>Stain the slide with hematoxylin for 2-4 min, then wash with deionized water for 5 min or until it is running clear. The precise duration of hematoxylin staining will need to be optimized to the tissue and desired nuclear staining intensity.</li>
	<li>Wash in defining solution for 30 s to differentiate stains, then wash in water for 2 min. Wash in blue color forming solution for 30 s, then wash in water for 2 min.</li>
	<li>Dehydrate further by dipping in 95% ethanol 15x. Stain in eosin for 1 min.</li>
	<li>Dehydrate with 2 min ethanol washes (2x), followed by 2 min xylene washes (2x). Apply mounting media and cover slip.</li>
</ol>

Mouse Model for Studying Lung Ischemia-Reperfusion Injury

<ol>
	<li>Bharat, A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Immunological+link+between+primary+graft+dysfunction+and+chronic+lung+allograft+rejection.">Immunological link between primary graft dysfunction and chronic lung allograft rejection.</a> Ann Thorac Surg. 86 (1), 189-195 (2008).</li><li>Daud, S. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Impact+of+immediate+primary+lung+allograft+dysfunction+on+bronchiolitis+obliterans+syndrome.">Impact of immediate primary lung allograft dysfunction on bronchiolitis obliterans syndrome.</a> Am J Respir Crit Care Med. 175 (5), 507-513 (2007).</li><li>Halazun, K. J., Al-Mukhtar, A., Aldouri, A., Willis, S., Ahmad, N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Warm+ischemia+in+transplantation:+search+for+a+consensus+definition.">Warm ischemia in transplantation: search for a consensus definition.</a> Transplant Proc. 39 (5), 1329-1331 (2007).</li><li>Warnecke, G., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Warm+or+cold+ischemia+in+animal+models+of+lung+ischemia-reperfusion+injury:+is+there+a+difference+.">Warm or cold ischemia in animal models of lung ischemia-reperfusion injury: is there a difference .</a> Thorac Cardiovasc Surg. 52 (3), 174-179 (2004).</li><li>Hasenauer, A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Effects+of+cold+or+warm+ischemia+and+ex-vivo+lung+perfusion+on+the+release+of+damage+associated+molecular+patterns+and+inflammatory+cytokines+in+experimental+lung+transplantation.">Effects of cold or warm ischemia and ex-vivo lung perfusion on the release of damage associated molecular patterns and inflammatory cytokines in experimental lung transplantation.</a> J Heart Lung Transplant. 40 (9), 905-916 (2021).</li><li>Iskender, I., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Effects+of+warm+versus+cold+ischemic+donor+lung+preservation+on+the+underlying+mechanisms+of+injuries+during+ischemia+and+reperfusion.">Effects of warm versus cold ischemic donor lung preservation on the underlying mechanisms of injuries during ischemia and reperfusion.</a> Transplantation. 102 (5), 760-768 (2018).</li><li>Santos, P., Teixeira, P. J. Z., Moraes Neto, D. M., Cypel, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Donation+after+circulatory+death+and+lung+transplantation.">Donation after circulatory death and lung transplantation.</a> J Bras Pneumol. 48 (2), e20210369 (2022).</li><li>Moskowitzova, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mitochondrial+transplantation+enhances+murine+lung+viability+and+recovery+after+ischemia-reperfusion+injury.">Mitochondrial transplantation enhances murine lung viability and recovery after ischemia-reperfusion injury.</a> Am J Physiol Lung Cell Mol Physiol. 318 (1), L78-L88 (2020).</li><li>Nakata, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Functional+blockage+of+S100A8/A9+ameliorates+ischemia-reperfusion+injury+in+the+lung.">Functional blockage of S100A8/A9 ameliorates ischemia-reperfusion injury in the lung.</a> Bioengineering (Basel). 9 (11), 673 (2022).</li><li>Nakata, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Protective+effects+of+anti-HMGB1+monoclonal+antibody+on+lung+ischemia+reperfusion+injury+in+mice.">Protective effects of anti-HMGB1 monoclonal antibody on lung ischemia reperfusion injury in mice.</a> Biochem Biophys Res Commun. 573, 164-170 (2021).</li><li>Wang, Q., Li, Y., Wu, C., Wang, T., Wu, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Aquaporin-1+inhibition+exacerbates+ischemia-reperfusion-induced+lung+injury+in+mouse.">Aquaporin-1 inhibition exacerbates ischemia-reperfusion-induced lung injury in mouse.</a> Am J Med Sci. 365 (1), 84-92 (2023).</li><li>Gielis, J. F., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+murine+model+of+lung+ischemia+and+reperfusion+injury:+tricks+of+the+trade.">A murine model of lung ischemia and reperfusion injury: tricks of the trade.</a> J Surg Res. 194 (2), 659-666 (2015).</li><li>Zhang, X., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mitogen-activated+protein+kinases+regulate+HO-1+gene+transcription+after+ischemia-reperfusion+lung+injury.">Mitogen-activated protein kinases regulate HO-1 gene transcription after ischemia-reperfusion lung injury.</a> Am J Physiol Lung Cell Mol Physiol. 283 (4), L815-L829 (2002).</li><li>Sharma, A. K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Adenosine+A2A+receptor+activation+on+CD4++T+lymphocytes+and+neutrophils+attenuates+lung+ischemia-reperfusion+injury.">Adenosine A2A receptor activation on CD4+ T lymphocytes and neutrophils attenuates lung ischemia-reperfusion injury.</a> J Thorac Cardiovasc Surg. 139 (2), 474-482 (2010).</li><li>Yang, Z., Sharma, A. K., Linden, J., Kron, I. L., Laubach, V. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=CD4++T+lymphocytes+mediate+acute+pulmonary+ischemia-reperfusion+injury.">CD4+ T lymphocytes mediate acute pulmonary ischemia-reperfusion injury.</a> J Thorac Cardiovasc Surg. 137 (3), 695-702 (2009).</li><li>Sayah, D. M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Neutrophil+extracellular+traps+are+pathogenic+in+primary+graft+dysfunction+after+lung+transplantation.">Neutrophil extracellular traps are pathogenic in primary graft dysfunction after lung transplantation.</a> Am J Respir Crit Care Med. 191 (4), 455-463 (2015).</li><li>Okazaki, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+mouse+model+of+orthotopic+vascularized+aerated+lung+transplantation.">A mouse model of orthotopic vascularized aerated lung transplantation.</a> Am J Transplant. 6 (7), 1672-1679 (2007).</li><li>Hsiao, H. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Spleen-derived+classical+monocytes+mediate+lung+ischemia-reperfusion+injury+through+IL-1beta.">Spleen-derived classical monocytes mediate lung ischemia-reperfusion injury through IL-1beta.</a> J Clin Invest. 128 (7), 2833-2847 (2018).</li><li>Sharma, A. K., Mulloy, D. P., Le, L. T., Laubach, V. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=NADPH+oxidase+mediates+synergistic+effects+of+IL-17+and+TNF-alpha+on+CXCL1+expression+by+epithelial+cells+after+lung+ischemia-reperfusion.">NADPH oxidase mediates synergistic effects of IL-17 and TNF-alpha on CXCL1 expression by epithelial cells after lung ischemia-reperfusion.</a> Am J Physiol Lung Cell Mol Physiol. 306 (1), L69-L79 (2014).</li><li>Zanotti, G., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Novel+critical+role+of+Toll-like+receptor+4+in+lung+ischemia-reperfusion+injury+and+edema.">Novel critical role of Toll-like receptor 4 in lung ischemia-reperfusion injury and edema.</a> Am J Physiol Lung Cell Mol Physiol. 297 (297), L52-L63 (2009).</li><li>National Research Council. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Guide for the care and use of laboratory animals. , (2011).</li><li>Saito, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Pirfenidone+alleviates+lung+ischemia-reperfusion+injury+in+a+rat+model.">Pirfenidone alleviates lung ischemia-reperfusion injury in a rat model.</a> J Thorac Cardiovasc Surg. 158 (1), 289-296 (2019).</li><li>Tanaka, S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Protective+effects+of+Imatinib+on+ischemia/reperfusion+injury+in+rat+lung.">Protective effects of Imatinib on ischemia/reperfusion injury in rat lung.</a> Ann Thorac Surg. 102 (5), 1717-1724 (2016).</li><li>Kreisel, D., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=In+vivo+two-photon+imaging+reveals+monocyte-dependent+neutrophil+extravasation+during+pulmonary+inflammation.">In vivo two-photon imaging reveals monocyte-dependent neutrophil extravasation during pulmonary inflammation.</a> Proc Natl Acad Sci U S A. 107 (42), 18073-18078 (2010).</li><li>Koletsis, E., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=In+situ+cooling+in+a+lung+hilar+clamping+model+of+ischemia-reperfusion+injury.">In situ cooling in a lung hilar clamping model of ischemia-reperfusion injury.</a> Exp Biol Med (Maywood). 231 (8), 1410-1420 (2006).</li><li>Hermsen, R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Genomic+landscape+of+rat+strain+and+substrain+variation.">Genomic landscape of rat strain and substrain variation.</a> BMC Genomics. 16 (1), 357 (2015).</li><li>Beck, J. A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Genealogies+of+mouse+inbred+strains.">Genealogies of mouse inbred strains.</a> Nat Genet. 24 (1), 23-25 (2000).</li><li>Liao, W. I., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+mouse+model+of+orotracheal+intubation+and+ventilated+lung+ischemia+reperfusion+surgery.">A mouse model of orotracheal intubation and ventilated lung ischemia reperfusion surgery.</a> J Vis Exp. (187), 64383 (2022).</li><li>Murata, T., Nakazawa, H., Mori, I., Ohta, Y., Yamabayashi, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Reperfusion+after+a+two-hour+period+of+pulmonary+artery+occlusion+causes+pulmonary+necrosis.">Reperfusion after a two-hour period of pulmonary artery occlusion causes pulmonary necrosis.</a> Am Rev Respir Dis. 146 (4), 1048-1053 (1992).</li><li>Ukita, R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+large+animal+model+for+pulmonary+hypertension+and+right+ventricular+failure:+Left+pulmonary+artery+ligation+and+progressive+main+pulmonary+artery+banding+in+sheep.">A large animal model for pulmonary hypertension and right ventricular failure: Left pulmonary artery ligation and progressive main pulmonary artery banding in sheep.</a> J Vis Exp. (173), 62694 (2021).</li><li>Wang, Q., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Induction+of+right+ventricular+failure+by+pulmonary+artery+constriction+and+evaluation+of+right+ventricular+function+in+mice.">Induction of right ventricular failure by pulmonary artery constriction and evaluation of right ventricular function in mice.</a> J Vis Exp. (147), 59431 (2019).</li><li>Welbourn, C. R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Pathophysiology+of+ischaemia+reperfusion+injury:+central+role+of+the+neutrophil.">Pathophysiology of ischaemia reperfusion injury: central role of the neutrophil.</a> Br J Surg. 78 (6), 651-655 (1991).</li></ol>

The authors report no relevant disclosures.

We describe a hilar clamp technique that involves application of a slipknot on the left hilum which occludes the pulmonary artery and veins and bronchus to induce warm ischemia followed by reperfusion. After hilar clamping, the left lung can be harvested for a variety of experimental techniques such as histology, flow cytometry, bulk or single cell sequencing, and quantitative polymerase chain reaction. Additionally, the blood and spleen may be used to study systemic effects, while the non-ischemic right lung may serve a...

<a href="https://app.jove.com/t/6603">This corrects</a> the article <a href="https://dx.doi.org/10.3791/66232">10.3791/66232</a>

An erratum was issued for:&#160;<a href="https://www.jove.com/t/66232">Murine Left Pulmonary Hilar Clamp Model of Lung Ischemia Reperfusion Injury</a>. The Protocol and Representative Results&#160;sections were&#160;updated.

Erratum: Murine Left Pulmonary Hilar Clamp Model of Lung Ischemia Reperfusion Injury

IRI during organ transplantation is a major risk factor for primary graft dysfunction and later episodes of graft rejection1,2. During transplantation, warm ischemia time is defined as the period of time from donor aortic cross-clamp to initiation of cold perfusion and from organ removal from ice to organ implantation. Cold storage time is defined as the period of time from the start of cold perfusion to the removal of the organ from ice3. Warm ischemia is more deleterious for later organ function than cold ischemia4,5,6, and its underlying mechanisms warrant further study in pre-clinical models. Additionally, organ transplantation from donation after cardiac death (DCD) is associated with longer warm ischemic times than traditional donation after brain death (DBD)7. While the use of DCD donors can expand the donor pool and increase lung utilization, further pre-clinical studies to evaluate the effects of warm ischemia on post-transplant lung function are needed. Below, we describe a model of warm IRI in mice via the left pulmonary hilar clamp.
Several animal models of lung hilar clamping have been developed and adapted over the last several years and may include the use of an atraumatic microvascular clamp8,9,10,11,12,13, a Rumel tourniquet14,15, or suture ligation16 as the hilar clamp. The crux of the hilar clamp is that it must be reversible and cause minimal or no damage to the hilar structures so that reperfusion can be achieved. Here, we describe our hilar clamp technique in mice that involves reversible suture ligation of the left pulmonary hilum with a slipknot. This method occludes the pulmonary arterial inflow, venous outflow, and airflow in and out of the mainstem bronchus. The main benefit of a slipknot over a vascular clamp, clip, or tourniquet is that the chest can be closed during prolonged periods of ischemia, thereby minimizing insensible fluid and heat loss in the mouse. We provide a protocol for obtaining reliable arterial blood gas (ABG) measurements and for measuring cell extravasation after hilar clamping.
This hilar clamp technique holds an important place in the wider study of lung transplantation. Compared to small animal models of orthotopic lung transplantation, the hilar clamp technique can isolate the effects of IRI without the addition of surgical anastomotic trauma or allogenicity17. Additionally, the hilar clamp technique can be more easily and quickly mastered than the mouse lung transplant. In fact, using hilar clamp techniques, several important mechanisms in the pathogenesis of IRI have been identified in the past decade, such as TLR4, NADPH oxidase, and adenosine A2A receptor14,18,19,20. In the following protocol, we present a reliable, teachable, and reproducible method of hilar clamping as a tool for studying lung IRI.

<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>Medications</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>10% povidone-iodine solution</td>
			<td>Aplicare</td>
			<td>NDC 52380-0126-2</td>
			<td>For disinfectant</td>
		</tr>
		<tr>
			<td>Buprenorphine 1.3 mg/mL</td>
			<td>Fidelis Animal Health</td>
			<td>NDC 86084-100-30</td>
			<td>For pain control</td>
		</tr>
		<tr>
			<td>Carprofen</td>
			<td>Cronus Pharma</td>
			<td>NDC 69043-027-18</td>
			<td>For pain control</td>
		</tr>
		<tr>
			<td>Heparin 1000 units/mL</td>
			<td>Sagent</td>
			<td>NDC 25021-404-01</td>
			<td>For obtaining arterial blood</td>
		</tr>
		<tr>
			<td>Isoflurane 1%-1.5%</td>
			<td>Sigma Aldrich</td>
			<td>26675-46-7</td>
			<td>For anesthesia</td>
		</tr>
		<tr>
			<td>Ketamine hydrochloride 100 mg/mL</td>
			<td>Vedco</td>
			<td>NDC 50989-996-06</td>
			<td>For anesthesia</td>
		</tr>
		<tr>
			<td>Puralube Vet eye ointment</td>
			<td>Medi-Vet.com</td>
			<td>11897</td>
			<td>To prevent eye dessiccation</td>
		</tr>
		<tr>
			<td>Xylazine 20 mg/mL</td>
			<td>Akorn</td>
			<td>NDC 59399-110-20</td>
			<td>For pain control</td>
		</tr>
		<tr>
			<td>Tools and Instruments</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Argent High Temp Fine Tip Cautery Pen</td>
			<td>McKesson</td>
			<td>231</td>
			<td>To coagulate blood vessels</td>
		</tr>
		<tr>
			<td>Curved mosquito clamp</td>
			<td>Fine Science Tools</td>
			<td>13009-12</td>
			<td>For surgical procedure</td>
		</tr>
		<tr>
			<td>Fine curved forceps</td>
			<td>Fine Science Tools</td>
			<td>11274-20</td>
			<td>For surgical procedure</td>
		</tr>
		<tr>
			<td>Fine scissors</td>
			<td>Fine Science Tools</td>
			<td>15040-11</td>
			<td>For surgical procedure</td>
		</tr>
		<tr>
			<td>Intubation clamp set-up</td>
			<td>Fine Science Tools</td>
			<td>18374-44, 18144-30</td>
			<td>For holding mouse vertically by the tongue during intubation. See Supplementary Figure 1A.&#160;</td>
		</tr>
		<tr>
			<td>Magnetic rib retractors</td>
			<td>Fine Science Tools</td>
			<td>18200-01, 18200-10</td>
			<td>For retraction of thoracotomy. Magnetic fixator and retractor should be connected by micro latex tubing below.</td>
		</tr>
		<tr>
			<td>Optical Grade Plastic Optical Fiber Unjacketed, 500&#956;m</td>
			<td>Edmund Optics</td>
			<td>02-532</td>
			<td>To make the introducer for the endotracheal tube. See Supplemental Figure 1B. A 1.5-inch length of this optical fiber should have a piece of silk tape secured to one end. It can then be used as an introducer for the endotracheal tube. The end of the introducer should be curves slightly.</td>
		</tr>
		<tr>
			<td>Power Pro Ultra clipper</td>
			<td>Oster</td>
			<td>078400-020-001</td>
			<td>To clip hair</td>
		</tr>
		<tr>
			<td>Scissors</td>
			<td>Fine Science Tools</td>
			<td>14370-22</td>
			<td>For surgical procedure</td>
		</tr>
		<tr>
			<td>Small animal heating pad</td>
			<td>K&#38;H Pet Products</td>
			<td>Thermo-Peep Heated Pad</td>
			<td>To maintain normothermia</td>
		</tr>
		<tr>
			<td>Small animal ventilator</td>
			<td>Harvard Apparatus</td>
			<td>55-0000</td>
			<td>For ventilation (TV 0.35 cc, PEEP 1 cm H2O, RR 100-105/min, FiO2 100%)</td>
		</tr>
		<tr>
			<td>Spearit Micro Latex Rubber Tubing (1/8 in outside diameter, 1/16 in inside diameter)</td>
			<td>Amazon.com</td>
			<td>https://www.amazon.com/Rubber-Tubing-CONTINUOUS-Select-Length/dp/B00H4MT7V0?th=1</td>
			<td>For retraction of thoracotomy</td>
		</tr>
		<tr>
			<td>Stat Profile Prime Critical Care Blood Gas Analyzer</td>
			<td>Nova Biomedical</td>
			<td>https://novabiomedical.com/prime-plus-critical-care-blood-gas-analyzer/index.php?gad=1&#38;gclid=Cj0KCQjwmICoBhDx 
			ARIsABXkXlInZX--R3ezBkc304nS_GVGI9Z2T3Esr33 
			2aM8WGPiUVhicPQZ 
			Wj2AaAqhDEALw_wcB&#160;&#160;</td>
			<td>For retraction of thoracotomy</td>
		</tr>
		<tr>
			<td>Straight clamp</td>
			<td>Fine Science Tools</td>
			<td>13008-12</td>
			<td>For surgical procedure</td>
		</tr>
		<tr>
			<td>Straight forceps</td>
			<td>Fine Science Tools</td>
			<td>91113-10</td>
			<td>For surgical procedure</td>
		</tr>
		<tr>
			<td>Surgical microscope</td>
			<td>Wild Heerbrugg</td>
			<td>no longer produced</td>
			<td>For intubation and surgical procedure; recommend replacement with Leica surgical microscopes</td>
		</tr>
		<tr>
			<td>Supplies</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>&#189; cc syringe with &#189; inch 29G needle</td>
			<td>McKesson</td>
			<td>942665</td>
			<td>For injecting ketamine/xylazine intraperitoneally</td>
		</tr>
		<tr>
			<td>&#189; inch 31G needle on a 1 cc tuberculin syringe</td>
			<td>McKesson</td>
			<td>16-SNT1C2705</td>
			<td>For aspiration of arterial blood from left ventricle</td>
		</tr>
		<tr>
			<td>1-inch 20G IV catheter</td>
			<td>Terumo</td>
			<td>SROX2025CA</td>
			<td>For endotracheal tube (ETT)</td>
		</tr>
		<tr>
			<td>1-inch silk tape</td>
			<td>Durapore</td>
			<td>3M ID 7100057168</td>
			<td>To tape ETT to nose and to secure limbs</td>
		</tr>
		<tr>
			<td>3/10 cc syringe with 5/16 inch 31G needle</td>
			<td>McKesson</td>
			<td>102-SN310C31516P</td>
			<td>For antibody injection into the inferior vena cava</td>
		</tr>
		<tr>
			<td>6-0 monofilament suture on a P-10 needle</td>
			<td>McKesson</td>
			<td>S697GX</td>
			<td>For closure of thoracotomy, muscle layer, and skin</td>
		</tr>
		<tr>
			<td>6-0 silk tie</td>
			<td>Surgical Specialties Look</td>
			<td>SP102</td>
			<td>To make slipknot for hilar clamp</td>
		</tr>
		<tr>
			<td>Pointed cotton-tipped applicators</td>
			<td>Solon</td>
			<td>56225</td>
			<td>To manipulate lung and for blunt dissection</td>
		</tr>
	</tbody>
</table>

murine left pulmonary hilar clamp model of lung ischemia reperfusion injury

Ischemia reperfusion injury (IRI) during lung transplantation is a major risk factor for post-transplant complications, including primary graft dysfunction, acute and chronic rejection, and mortality. Efforts to study the underpinnings of IRI led to the development of a reliable and reproducible mouse model of left lung hilar clamping. This model involves a surgical procedure performed in an anesthetized and intubated mouse. A left thoracotomy is performed, followed by careful lung mobilization and dissection of the left pulmonary hilum. The hilar clamp involves reversible suture ligation of the pulmonary hilum with a slipknot, which stops the arterial inflow, venous outflow, and airflow through the left mainstem bronchus. Reperfusion is initiated by careful removal of the suture. Our laboratory uses 30 min of ischemia and 1 h of reperfusion for the experimental model in the current investigations. However, these time periods can be modified depending on the specific experimental question. Immediately prior to sacrifice, arterial blood gas can be obtained from the left ventricle after a 4 min period of right hilar clamping to ensure that the PaO2 values obtained are attributed to the injured left lung alone. We also describe a method to measure cell extravasation with flow cytometry, which involves intravenous injection of a fluorochrome-labeled antibody specific for the cell(s) to be studied prior to sacrifice. The left lung can then be harvested for flow cytometry, frozen or fixed, paraffin-embedded immunohistochemistry, and quantitative polymerase chain reaction. This hilar clamp technique allows for&#160;detailed study of the cellular and molecular mechanisms underlying IRI. Representative results reveal decreased left lung oxygenation and histologic evidence of lung injury following hilar clamping. This technique can be readily learned and reproduced by personnel with and without microsurgical experience, leading to reliable and consistent results and serving as a widely adoptable model for studying lung IRI.

Author Spotlight: Insights into the Effect of Ischemia Reperfusion on Lung Transplantation

Murine Left Pulmonary Hilar Clamp Model of Lung Ischemia Reperfusion Injury

We are interested in studying the effects of ischemia-reperfusion injury on outcomes following lung transplantation with the goal of understanding underlying cellular and molecular mechanisms. Neutrophils that enter the lung contribute to ischemia-reperfusion injury, or IRI. We've recently discovered that B cells proceed neutrophils in entering the lung, and they play a role in the recruitment of neutrophils following IRI.Left lung transplantation in the mouse is technically challenging, and requires full-time, dedicated training over several months to achieve consistent results. Additionally, it introduces allergenicity and surgical anastomotic trauma. Thus, we need a more accessible technique that can isolate the study of ischemia-reperfusion injury.Using our hilar clamp model, we have found that B-cells enter the lung early after ischemia-reperfusion injury, and they recruit classical monocytes in a B-cell receptor into TLR4 dependent fashion. This ultimately results in increased neutrophil extravasation into the lung. Our protocol involves reversible suture ligation of the left pulmonary hilum with a slip knot.The pliable and unobtrusive nature of the suture allows for chest closure, which is useful for studying longer periods of warm ischemia, as chest closure minimizes heat and insensible fluid losses in the mouse.

After left hilar clamping, partial pressure of oxygenation in the arterial blood (PaO2) attributed to the left lung is ~100 mmHg, significantly lower compared to the ~500 mmHg following sham thoracotomy (Figure 7A, n=6-7). Of note, sham thoracotomies were performed in B6 mice with ABG measurement taken after 4 min of right hilar clamping, representing values attributed to the left lung alone. H&#38;E staining of the hilar clamped left lung demonstrated infiltrating inflammatory ce...

Watch this Scientific Journal Video about Author Spotlight: Insights into the Effect of Ischemia Reperfusion on Lung Transplantation at JoVE.com

The protocol outlines a feasible, reliable, and reproducible method of left pulmonary hilar clamping that can be used to study lung ischemia-reperfusion injury in mouse models.

Ischemia reperfusion injury (IRI) during lung transplantation is a major risk factor for post-transplant complications, including primary graft ...

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Hilar Clamping and Arterial Blood Gas Evaluation of Reperfused Lungs in Mice for Ischemia Research

907 Views.  Washington University, St. Louis.  The protocol outlines a feasible, reliable, and reproducible method of left pulmonary hilar clamping that can be used to study lung ischemia-reperfusion injury in mouse models.

Mouse Model for Studying Lung Ischemia-Reperfusion Injury

Summary