Caroline C. Friedel

Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage.

Toward the complete interactome.

Reliable gene signatures for microarray classification: assessment of stability and performance.

Inferring topology from clustering coefficients in protein-protein interaction networks.

Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome.

Influence of degree correlations on network structure and stability in protein-protein interaction networks.

ProCope--protein complex prediction and evaluation.

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay.

FERN - a Java framework for stochastic simulation and evaluation of reaction networks.

Identifying the topology of protein complexes from affinity purification assays.

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life.

Bootstrapping the interactome: unsupervised identification of protein complexes in yeast.

Evolutionarily conserved herpesviral protein interaction networks.

Metabolic tagging and purification of nascent RNA: implications for transcriptomics.

HALO--a Java framework for precise transcript half-life determination.

Systematic analysis of viral and cellular microRNA targets in cells latently infected with human gamma-herpesviruses by RISC immunoprecipitation assay.

Quantitative proteomics of the integrin adhesome show a myosin II-dependent recruitment of LIM domain proteins.

Virus-host interactomes and global models of virus-infected cells.

The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors.

Genome-wide assessment of AU-rich elements by the AREScore algorithm.

A context-based approach to identify the most likely mapping for RNA-seq experiments.

Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution.

Detection and correction of probe-level artefacts on microarrays.

Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection.

A comprehensive evaluation of alignment algorithms in the context of RNA-seq.

β1- and αv-class integrins cooperate to regulate myosin II during rigidity sensing of fibronectin-based microenvironments.

Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis.

Clonal Expansion Analysis of Transposon Insertions by High-Throughput Sequencing Identifies Candidate Cancer Genes in a PiggyBac Mutagenesis Screen.