Evolutionary Ecology and Genetics
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Introduction. Ecological immunology.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences Jan, 2009 | Pubmed ID: 18926970
Multiple reciprocal adaptations and rapid genetic change upon experimental coevolution of an animal host and its microbial parasite.
Proceedings of the National Academy of Sciences of the United States of America Apr, 2010 | Pubmed ID: 20368449
Protist-type lysozymes of the nematode Caenorhabditis elegans contribute to resistance against pathogenic Bacillus thuringiensis.
PloS one , 2011 | Pubmed ID: 21931778
The optimal deployment of synergistic antibiotics: a control-theoretic approach.
Journal of the Royal Society, Interface Oct, 2012 | Pubmed ID: 22628215
Genomics of rapid adaptation to antibiotics: convergent evolution and scalable sequence amplification.
Genome biology and evolution May, 2014 | Pubmed ID: 24850796
Why we need more ecology for genetic models such as C. elegans.
Trends in genetics : TIG Mar, 2015 | Pubmed ID: 25577479
Travelling at a slug's pace: possible invertebrate vectors of Caenorhabditis nematodes.
BMC ecology 07, 2015 | Pubmed ID: 26170141
Evolutionary Transition from Pathogenicity to Commensalism: Global Regulator Mutations Mediate Fitness Gains through Virulence Attenuation.
Molecular biology and evolution Nov, 2015 | Pubmed ID: 26199376
Host-parasite coevolution in populations of constant and variable size.
BMC evolutionary biology Sep, 2015 | Pubmed ID: 26419522
WormExp: a web-based application for a Caenorhabditis elegans-specific gene expression enrichment analysis.
Bioinformatics (Oxford, England) 03, 2016 | Pubmed ID: 26559506
Temporal variation in antibiotic environments slows down resistance evolution in pathogenic Pseudomonas aeruginosa.
Evolutionary applications Dec, 2015 | Pubmed ID: 26640520
Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1.
BMC genomics Apr, 2016 | Pubmed ID: 27066825
The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model.
BMC biology 05, 2016 | Pubmed ID: 27160191
Antimicrobial effectors in the nematode Caenorhabditis elegans: an outgroup to the Arthropoda.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 05, 2016 | Pubmed ID: 27160601
Host-parasite coevolution: why changing population size matters.
Zoology (Jena, Germany) 08, 2016 | Pubmed ID: 27161157
Association between clinical antibiotic resistance and susceptibility of Pseudomonas in the cystic fibrosis lung.
Evolution, medicine, and public health , 2016 | Pubmed ID: 27193199
GATA transcription factor as a likely key regulator of the Caenorhabditis elegans innate immune response against gut pathogens.
Zoology (Jena, Germany) 08, 2016 | Pubmed ID: 27372411
Host-parasite coevolution-rapid reciprocal adaptation and its genetic basis.
Zoology (Jena, Germany) 08, 2016 | Pubmed ID: 27432487
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences.
BMC genomics 08, 2016 | Pubmed ID: 27488180
The Natural Biotic Environment of .
Genetics 05, 2017 | Pubmed ID: 28476862
Infection Models: Novel Potato Blight-like Pathogens in Worms.
Current biology : CB 03, 2018 | Pubmed ID: 29558646
A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits.
BMC biology 03, 2019 | Pubmed ID: 30866929
aFold - using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data.
BMC genomics May, 2019 | Pubmed ID: 31077153
Bdellovibrio and Like Organisms Are Predictors of Microbiome Diversity in Distinct Host Groups.
Microbial ecology Jan, 2020 | Pubmed ID: 31187177
Neutrality in the Metaorganism.
PLoS biology 06, 2019 | Pubmed ID: 31216282
The functional repertoire contained within the native microbiota of the model nematode Caenorhabditis elegans.
The ISME journal 01, 2020 | Pubmed ID: 31484996
Evolutionary stability of collateral sensitivity to antibiotics in the model pathogen .
eLife 10, 2019 | Pubmed ID: 31658946
How long do Red Queen dynamics survive under genetic drift? A comparative analysis of evolutionary and eco-evolutionary models.
BMC evolutionary biology 01, 2020 | Pubmed ID: 31931696
Community assembly of the native C. elegans microbiome is influenced by time, substrate and individual bacterial taxa.
Environmental microbiology 04, 2020 | Pubmed ID: 32003074
CeMbio - The Microbiome Resource.
G3 (Bethesda, Md.) 09, 2020 | Pubmed ID: 32669368
The Genomic Basis of Rapid Adaptation to Antibiotic Combination Therapy in Pseudomonas aeruginosa.
Molecular biology and evolution 01, 2021 | Pubmed ID: 32931584
Evolution of Microbiota-Host Associations: The Microbe's Perspective.
Trends in microbiology 09, 2021 | Pubmed ID: 33674142
The effects of nested miRNAs and their host genes on immune defense against Bacillus thuringiensis infection in Caenorhabditis elegans.
Developmental and comparative immunology 10, 2021 | Pubmed ID: 34051205
Modeling host-associating microbes under selection.
The ISME journal 12, 2021 | Pubmed ID: 34158630
Bottleneck size and selection level reproducibly impact evolution of antibiotic resistance.
Nature ecology & evolution 09, 2021 | Pubmed ID: 34312522
High potency of sequential therapy with only β-lactam antibiotics.
eLife 07, 2021 | Pubmed ID: 34318749
The genetics of gene expression in a Caenorhabditis elegans multiparental recombinant inbred line population.
G3 (Bethesda, Md.) 09, 2021 | Pubmed ID: 34568931
Exploring Effects of Protective Natural Microbiota on Host Physiology.
Frontiers in cellular and infection microbiology , 2022 | Pubmed ID: 35237530