J. Gregory Caporaso

Origins of the genetic code: the escaped triplet theory.

Error minimization and coding triplet/binding site associations are independent features of the canonical genetic code.

MutationFinder: a high-performance system for extracting point mutation mentions from text.

PyCogent: a toolkit for making sense from sequence.

Rapid pattern development for concept recognition systems: application to point mutations.

Intrinsic evaluation of text mining tools may not predict performance on realistic tasks.

Concept recognition for extracting protein interaction relations from biomedical text.

Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics.

PyNAST: a flexible tool for aligning sequences to a template alignment.

QIIME allows analysis of high-throughput community sequencing data.

Soil bacterial and fungal communities across a pH gradient in an arable soil.

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

Examining the global distribution of dominant archaeal populations in soil.

Bacterial communities associated with the lichen symbiosis.

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers.

Host-associated and free-living phage communities differ profoundly in phylogenetic composition.

New insight into the diversity of life's building blocks: evenness, not variance.

Moving pictures of the human microbiome.

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys.

Defining seasonal marine microbial community dynamics.

TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata.

The Western English Channel contains a persistent microbial seed bank.

Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys.

Sequencing our way towards understanding global eukaryotic biodiversity.

The under-recognized dominance of Verrucomicrobia in soil bacterial communities.

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites.

Human gut microbiome viewed across age and geography.

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.

Collaborative cloud-enabled tools allow rapid, reproducible biological insights.

Diversity, distribution and sources of bacteria in residential kitchens.

Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

Bacterial diversity in two Neonatal Intensive Care Units (NICUs).

From molecules to dynamic biological communities.

Evidence for a persistent microbial seed bank throughout the global ocean.

A meta-analysis of changes in bacterial and archaeal communities with time.

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome.

Cohabiting family members share microbiota with one another and with their dogs.

The Ecology of Microbial Communities Associated with Macrocystis pyrifera.

Meeting report: fungal its workshop (october 2012).

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Advancing our understanding of the human microbiome using QIIME.

The personal human oral microbiome obscures the effects of treatment on periodontal disease.

The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes.

Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch).

Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity.

Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity.

Conducting a microbiome study.

Individual diet has sex-dependent effects on vertebrate gut microbiota.

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.

Advancing the microbiome research community.