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Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis.
Applied and environmental microbiology Jun, 2006 | Pubmed ID: 16751553
Environmental whole-genome amplification to access microbial populations in contaminated sediments.
Applied and environmental microbiology May, 2006 | Pubmed ID: 16672469
Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach.
Journal of bacteriology Jun, 2006 | Pubmed ID: 16707698
Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough.
Journal of bacteriology Aug, 2007 | Pubmed ID: 17545284
Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.
Applied and environmental microbiology Sep, 2007 | Pubmed ID: 17630305
Response of Desulfovibrio vulgaris to alkaline stress.
Journal of bacteriology Dec, 2007 | Pubmed ID: 17921288
The electron transfer system of syntrophically grown Desulfovibrio vulgaris.
Journal of bacteriology Sep, 2009 | Pubmed ID: 19581361
Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer.
Applied and environmental microbiology Jun, 2011 | Pubmed ID: 21498771
Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.
Applied and environmental microbiology Apr, 2012 | Pubmed ID: 22267668
Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.
Journal of bacteriology Sep, 2012 | Pubmed ID: 22933770
Advances in monitoring environmental microbes.
Current opinion in biotechnology Jun, 2013 | Pubmed ID: 23183250
Draft Genome Sequence of Rhodococcus opacus Strain M213 Shows a Diverse Catabolic Potential.
Genome announcements Jan, 2013 | Pubmed ID: 23409266
The SuperChip for microbial community structure, and function from all environments.
Microbial biotechnology Sep, 2013 | Pubmed ID: 23464831
Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution.
The ISME journal Sep, 2013 | Pubmed ID: 23575373
Draft Genome Sequence for Desulfovibrio africanus Strain PCS.
Genome announcements Apr, 2013 | Pubmed ID: 23580709
Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.
Standards in genomic sciences , 2013 | Pubmed ID: 24019987
Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils.
Systematic and applied microbiology Feb, 2014 | Pubmed ID: 24238986
Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities.
PloS one , 2013 | Pubmed ID: 24376771
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem.
Proceedings of the National Academy of Sciences of the United States of America Mar, 2014 | Pubmed ID: 24550501
Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities.
Frontiers in microbiology , 2014 | Pubmed ID: 24772107
Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil.
Genome announcements Jun, 2014 | Pubmed ID: 24948777
Assessing impacts of unconventional natural gas extraction on microbial communities in headwater stream ecosystems in Northwestern Pennsylvania.
Frontiers in microbiology , 2014 | Pubmed ID: 25408683
Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters.
Genome announcements Nov, 2014 | Pubmed ID: 25428968
Draft Genome Sequence of Thalassotalea sp. Strain ND16A Isolated from Eastern Mediterranean Sea Water Collected from a Depth of 1,055 Meters.
Genome announcements Nov, 2014 | Pubmed ID: 25428976
Microbial community composition and diversity in Caspian Sea sediments.
FEMS microbiology ecology Jan, 2015 | Pubmed ID: 25764536
High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater.
Genome announcements Mar, 2015 | Pubmed ID: 25767232
The unique chemistry of Eastern Mediterranean water masses selects for distinct microbial communities by depth.
PloS one , 2015 | Pubmed ID: 25807542
A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction.
Environmental science & technology Nov, 2015 | Pubmed ID: 25835088
Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.
The ISME journal Nov, 2015 | Pubmed ID: 25848870
Genome Sequence of Halomonas sp. Strain KO116, an Ionic Liquid-Tolerant Marine Bacterium Isolated from a Lignin-Enriched Seawater Microcosm.
Genome announcements May, 2015 | Pubmed ID: 25953187
Natural bacterial communities serve as quantitative geochemical biosensors.
mBio May, 2015 | Pubmed ID: 25968645
Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments.
Applied and environmental microbiology Aug, 2015 | Pubmed ID: 25979890
Co-extraction of DNA and PLFA from soil samples.
Journal of microbiological methods Aug, 2015 | Pubmed ID: 26027542
Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.
Frontiers in microbiology , 2015 | Pubmed ID: 26583008
Marine Oil Biodegradation.
Environmental science & technology Mar, 2016 | Pubmed ID: 26698270
Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported.
Molecular & cellular proteomics : MCP 05, 2016 | Pubmed ID: 26873250
In situ mobility of uranium in the presence of nitrate following sulfate-reducing conditions.
Journal of contaminant hydrology Apr, 2016 | Pubmed ID: 26897652
Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community.
mBio Apr, 2016 | Pubmed ID: 27048805
Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions.
Molecular & cellular proteomics : MCP 06, 2016 | Pubmed ID: 27099342
A Novel Analysis Method for Paired-Sample Microbial Ecology Experiments.
PloS one , 2016 | Pubmed ID: 27152415
Rapid detection of microbial cell abundance in aquatic systems.
Biosensors & bioelectronics Nov, 2016 | Pubmed ID: 27315516
Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm.
Genome announcements Nov, 2016 | Pubmed ID: 27881538
Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.
Environmental science & technology 03, 2017 | Pubmed ID: 28112946
Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer.
Environmental science & technology 04, 2017 | Pubmed ID: 28300407
High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: sp., sp., sp., and sp.
Genome announcements May, 2017 | Pubmed ID: 28473393
Unravelling biocomplexity of electroactive biofilms for producing hydrogen from biomass.
Microbial biotechnology 01, 2018 | Pubmed ID: 28696037
Rapid Response of Eastern Mediterranean Deep Sea Microbial Communities to Oil.
Scientific reports 07, 2017 | Pubmed ID: 28720895
Comparison of Thaumarchaeotal populations from four deep sea basins.
FEMS microbiology ecology 11, 2017 | Pubmed ID: 29029137
Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites.
Frontiers in microbiology , 2017 | Pubmed ID: 29312276
Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil.
Nature ecology & evolution 03, 2018 | Pubmed ID: 29358607
Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.
mBio 02, 2018 | Pubmed ID: 29463661
Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition.
PloS one , 2018 | Pubmed ID: 29558522
Response of Aquatic Bacterial Communities to Hydraulic Fracturing in Northwestern Pennsylvania: A Five-Year Study.
Scientific reports , | Pubmed ID: 29632304
Improved Method for Estimating Reaction Rates During Push-Pull Tests.
Ground water 03, 2019 | Pubmed ID: 29656383
Impacts of Glutaraldehyde on Microbial Community Structure and Degradation Potential in Streams Impacted by Hydraulic Fracturing.
Environmental science & technology , | Pubmed ID: 29683652
The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill.
Frontiers in microbiology , 2018 | Pubmed ID: 29755436
Corrigendum: The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill.
Frontiers in microbiology , 2018 | Pubmed ID: 29849432
Enrichment of Bacteria From Eastern Mediterranean Sea Involved in Lignin Degradation via the Phenylacetyl-CoA Pathway.
Frontiers in microbiology , 2018 | Pubmed ID: 29867833
Microbial Interactions With Dissolved Organic Matter Drive Carbon Dynamics and Community Succession.
Frontiers in microbiology , 2018 | Pubmed ID: 29937762
Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania.
Frontiers in microbiology , | Pubmed ID: 30116227
In situ decay of polyfluorinated benzoic acids under anaerobic conditions.
Journal of contaminant hydrology 10, 2018 | Pubmed ID: 30201555
Iron- and aluminium-induced depletion of molybdenum in acidic environments impedes the nitrogen cycle.
Environmental microbiology 01, 2019 | Pubmed ID: 30289197
Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes.
mBio 02, 2019 | Pubmed ID: 30808697
Oil Hydrocarbon Degradation by Caspian Sea Microbial Communities.
Frontiers in microbiology , 2019 | Pubmed ID: 31143165
Probing the active fraction of soil microbiomes using BONCAT-FACS.
Nature communications 06, 2019 | Pubmed ID: 31235780
High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer.
Water research Nov, 2019 | Pubmed ID: 31387058
Surface Water Microbial Community Response to the Biocide 2,2-Dibromo-3-Nitrilopropionamide, Used in Unconventional Oil and Gas Extraction.
Applied and environmental microbiology 11, 2019 | Pubmed ID: 31444200
Unconventional Oil and Gas Energy Systems: An Unidentified Hotspot of Antimicrobial Resistance?
Frontiers in microbiology , 2019 | Pubmed ID: 31681244
Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity.
Microbiome 04, 2020 | Pubmed ID: 32252814
Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer.
Chemosphere Sep, 2020 | Pubmed ID: 32417512
Microbial Communities across Global Marine Basins Show Important Compositional Similarities by Depth.
mBio 08, 2020 | Pubmed ID: 32817104
In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations.
PloS one , 2020 | Pubmed ID: 32986713
Performance and community structure dynamics of microbial electrolysis cells operated on multiple complex feedstocks.
Biotechnology for biofuels , 2020 | Pubmed ID: 33062055
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