Donnelly Centre & Department of Molecular Genetics
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Computational analysis of microRNA targets in Caenorhabditis elegans.
Gene Jan, 2006 | Pubmed ID: 16356665
Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model.
Gene May, 2006 | Pubmed ID: 16564143
HybGFS: a hybrid method for genome-fingerprint scanning.
BMC bioinformatics , 2006 | Pubmed ID: 17069662
Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks.
Journal of proteome research Dec, 2006 | Pubmed ID: 17137332
On the interplay of gene positioning and the role of rho-independent terminators in Escherichia coli.
FEBS letters Dec, 2006 | Pubmed ID: 17156778
Alignment-based approach for durable data storage into living organisms.
Biotechnology progress Mar-Apr, 2007 | Pubmed ID: 17253725
SPLITS: a new program for predicting split and intron-containing tRNA genes at the genome level.
In silico biology , 2006 | Pubmed ID: 17274770
In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs.
RNA (New York, N.Y.) May, 2007 | Pubmed ID: 17369313
eXpanda: an integrated platform for network analysis and visualization.
In silico biology , 2007 | Pubmed ID: 17688438
Bioinformatic analysis of post-transcriptional regulation by uORF in human and mouse.
FEBS letters Sep, 2007 | Pubmed ID: 17692847
Computational analysis of microRNA-mediated antiviral defense in humans.
FEBS letters Oct, 2007 | Pubmed ID: 17825824
Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae.
Science (New York, N.Y.) Oct, 2007 | Pubmed ID: 17947580
Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales.
Molecular biology and evolution Dec, 2008 | Pubmed ID: 18832079
Stabilizing synthetic data in the DNA of living organisms.
Systems and synthetic biology Jun, 2008 | Pubmed ID: 19083123
In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution.
Molecular & cellular proteomics : MCP May, 2009 | Pubmed ID: 19136663
Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data.
BMC bioinformatics , 2010 | Pubmed ID: 20459641
Integrative features of the yeast phosphoproteome and protein-protein interaction map.
PLoS computational biology , 2011 | Pubmed ID: 21298081
Computational analysis suggests a highly bendable, fragile structure for nucleosomal DNA.
Gene May, 2011 | Pubmed ID: 21338662
Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification.
BMC genomics , 2011 | Pubmed ID: 21846408
Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae.
Genetics 05, 2016 | Pubmed ID: 26936925
Pooled-matrix protein interaction screens using Barcode Fusion Genetics.
Molecular systems biology Apr, 2016 | Pubmed ID: 27107012
Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems.
Science (New York, N.Y.) 09, 2016 | Pubmed ID: 27492474
Robotic crowd biology with Maholo LabDroids.
Nature biotechnology 04, 2017 | Pubmed ID: 28398329
Systematic analysis of Ca homeostasis in based on chemical-genetic interaction profiles.
Molecular biology of the cell Nov, 2017 | Pubmed ID: 28566553
Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast.
G3 (Bethesda, Md.) 10, 2018 | Pubmed ID: 30097473
Engineered CRISPR-Cas9 nuclease with expanded targeting space.
Science (New York, N.Y.) 09, 2018 | Pubmed ID: 30166441
Fast and global detection of periodic sequence repeats in large genomic resources.
Nucleic acids research 01, 2019 | Pubmed ID: 30304510
: A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing.
Genetics 06, 2019 | Pubmed ID: 30936113
Complete Genome Sequence of sp. Strain KH172YL61, Isolated from Deep-Sea Sediments in the Nankai Trough, Japan.
Microbiology resource announcements Apr, 2019 | Pubmed ID: 31000557
DNA event recorders send past information of cells to the time of observation.
Current opinion in chemical biology 10, 2019 | Pubmed ID: 31200335
DNA barcodes evolve for high-resolution cell lineage tracing.
Current opinion in chemical biology 10, 2019 | Pubmed ID: 31212208
The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs.
eLife 08, 2019 | Pubmed ID: 31454312
Highly Combinatorial Genetic Interaction Analysis Reveals a Multi-Drug Transporter Influence Network.
Cell systems Jan, 2020 | Pubmed ID: 31668799
A genome-scale CRISPR/Cas9 knockout screening reveals SH3D21 as a sensitizer for gemcitabine.
Scientific reports Dec, 2019 | Pubmed ID: 31844142
Hirofumi Nishizono*,1,2,3,
Mohamed Darwish*,4,5,
Hideki Uosaki6,7,
Nanami Masuyama8,9,10,
Motoaki Seki8,11,
Hiroyuki Abe3,
Nozomu Yachie8,9,10,12,13,
Ryohei Yasuda1
1, Max Planck Florida Institute for Neuroscience,
2Life Science Research Center, University of Toyama,
3Department of Biochemical Engineering, Graduate School of Science and Engineering, Yamagata University,
4Graduate School of Innovative Life Science, University of Toyama,
5Department of Biochemistry, Faculty of Pharmacy, Cairo University,
6Division of Regenerative Medicine, Center for Molecular Medicine, Jichi Medical University,
7Division of Stem Cell Research and Drug Development, Center for Development of Advanced Medical Technology, Jichi Medical University,
8Synthetic Biology Division, Research Center for Advanced Science and Technology, University of Tokyo,
9Institute for Advanced Biosciences, Keio University,
10Graduate School of Media and Governance, Keio University,
11Department of Molecular Oncology, Graduate School of Medicine, Chiba University,
12Department of Biological Sciences, School of Science, University of Tokyo,
13College of Arts and Sciences, University of Tokyo
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