Ruifu Zhang

Responses of beneficial Bacillus amyloliquefaciens SQR9 to different soilborne fungal pathogens through the alteration of antifungal compounds production.

Parental material and cultivation determine soil bacterial community structure and fertility.

Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose-degrading genes.

Characterization and identification of the xylanolytic enzymes from Aspergillus fumigatus Z5.

The Effect of Long-Term Continuous Cropping of Black Pepper on Soil Bacterial Communities as Determined by 454 Pyrosequencing.

Analysis and cloning of the synthetic pathway of the phytohormone indole-3-acetic acid in the plant-beneficial Bacillus amyloliquefaciens SQR9.

Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates.

Significant alteration of soil bacterial communities and organic carbon decomposition by different long-term fertilization management conditions of extremely low-productivity arable soil in South China.

Plant-Microbe Communication Enhances Auxin Biosynthesis by a Root-Associated Bacterium, Bacillus amyloliquefaciens SQR9.

Induced maize salt tolerance by rhizosphere inoculation of Bacillus amyloliquefaciens SQR9.

Draft Genome Sequence of Pseudoalteromonas sp. Strain XI10 Isolated from the Brine-Seawater Interface of Erba Deep in the Red Sea.

Draft Genome Sequences of Two Thiomicrospira Strains Isolated from the Brine-Seawater Interface of Kebrit Deep in the Red Sea.

Characterization of extracellular polymeric substances of Bacillus amyloliquefaciens SQR9 induced by root exudates of cucumber.

Long-term organic-inorganic fertilization ensures great soil productivity and bacterial diversity after natural-to-agricultural ecosystem conversion.

Amino Acids Hydrolyzed from Animal Carcasses Are a Good Additive for the Production of Bio-organic Fertilizer.

Two degradation strategies for overcoming the recalcitrance of natural lignocellulosic xylan by polysaccharides-binding GH10 and GH11 xylanases of filamentous fungi.

Haloprofundus marisrubri gen. nov., sp. nov., an extremely halophilic archaeon isolated from a brine-seawater interface.

Identification of Root-Secreted Compounds Involved in the Communication Between Cucumber, the Beneficial Bacillus amyloliquefaciens, and the Soil-Borne Pathogen Fusarium oxysporum.

Characterization of Uncultured Genome Fragment from Soil Metagenomic Library Exposed Rare Mismatch of Internal Tetranucleotide Frequency.

Influence of straw incorporation with and without straw decomposer on soil bacterial community structure and function in a rice-wheat cropping system.

Beneficial Rhizobacterium Bacillus amyloliquefaciens SQR9 Induces Plant Salt Tolerance through Spermidine Production.

The unseen rhizosphere root-soil-microbe interactions for crop production.

Ponticoccus marisrubri sp. nov., a moderately halophilic marine bacterium of the family Rhodobacteraceae.

Ruegeria profundi sp. nov. and Ruegeria marisrubri sp. nov., isolated from the brine-seawater interface at Erba Deep in the Red Sea.

Exploring Elicitors of the Beneficial Rhizobacterium Bacillus amyloliquefaciens SQR9 to Induce Plant Systemic Resistance and Their Interactions With Plant Signaling Pathways.

ResDE Two-Component Regulatory System Mediates Oxygen Limitation-Induced Biofilm Formation by Bacillus amyloliquefaciens SQR9.

FtsEX-CwlO regulates biofilm formation by a plant-beneficial rhizobacterium Bacillus velezensis SQR9.

Effect of CBM1 and linker region on enzymatic properties of a novel thermostable dimeric GH10 xylanase (Xyn10A) from filamentous fungus Aspergillus fumigatus Z5.

Identification of Chemotaxis Compounds in Root Exudates and Their Sensing Chemoreceptors in Plant-Growth-Promoting Rhizobacteria Bacillus amyloliquefaciens SQR9.

Synthesis and detoxification of nitric oxide in the plant beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 and its effect on biofilm formation.

Grazing-induced microbiome alterations drive soil organic carbon turnover and productivity in meadow steppe.

Paracoccus salipaludis sp. nov., isolated from saline-alkaline soil.

Recognition of dominant attractants by key chemoreceptors mediates recruitment of plant growth-promoting rhizobacteria.

Wall Teichoic Acids Are Required for Biofilm Formation and Root Colonization.

Microbulbifer flavimaris sp. nov., a halophilic Gammaproteobacteria isolated from marine sediment of the Yellow Sea, China.

Cloning and expression of a β-mannanase gene from Bacillus sp. MK-2 and its directed evolution by random mutagenesis.

A genomic island in a plant beneficial rhizobacterium encodes novel antimicrobial fatty acids and a self-protection shield to enhance its competition.

Improvement of GH10 family xylanase thermostability by introducing of an extra α-helix at the C-terminal.

Diversity-triggered deterministic bacterial assembly constrains community functions.

Antibiotic Bacillomycin D Affects Iron Acquisition and Biofilm Formation in Bacillus velezensis through a Btr-Mediated FeuABC-Dependent Pathway.

Root-Secreted Spermine Binds to SQR9 Histidine Kinase KinD and Modulates Biofilm Formation.

Induced root-secreted D-galactose functions as a chemoattractant and enhances the biofilm formation of Bacillus velezensis SQR9 in an McpA-dependent manner.

A predatory myxobacterium controls cucumber Fusarium wilt by regulating the soil microbial community.

Quorum sensing signal autoinducer-2 promotes root colonization of Bacillus velezensis SQR9 by affecting biofilm formation and motility.

Specialized metabolic functions of keystone taxa sustain soil microbiome stability.

Volatile compounds from beneficial rhizobacteria Bacillus spp. promote periodic lateral root development in Arabidopsis.

Overcoming diverse homologous recombinations and single chimeric guide RNA competitive inhibition enhances Cas9-based cyclical multiple genes coediting in filamentous fungi.

Bacillus velezensis tolerance to the induced oxidative stress in root colonization contributed by the two-component regulatory system sensor ResE.

Significantly improving the thermostability of a hyperthermophilic GH10 family xylanase XynAF1 by semi-rational design.

Chemotaxis of Beneficial Rhizobacteria to Root Exudates: The First Step towards Root-Microbe Rhizosphere Interactions.

Potassium Phosphite Enhances the Antagonistic Capability of to Manage Tomato Bacterial Wilt.

Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions.

Identification of Adhesins in Plant Beneficial Rhizobacteria SQR9 and Their Effect on Root Colonization.

Rhizosphere microbiome: Functional compensatory assembly for plant fitness.

The volatile cedrene from Trichoderma guizhouense modulates Arabidopsis root development through auxin transport and signalling.

Nitrogen fertilization modulates beneficial rhizosphere interactions through signaling effect of nitric oxide.

Biosynthetic gene cluster profiling predicts the positive association between antagonism and phylogeny in Bacillus.

Exploring the multi-level regulation of lignocellulases in the filamentous fungus Trichoderma guizhouense NJAU4742 from an omics perspective.

Signal binding at both modules of its dCache domain enables the McpA chemoreceptor of to sense different ligands.

Identification of the core c-di-GMP turnover proteins responsible for root colonization of .

Rhizosphere microbes enhance plant salt tolerance: Toward crop production in saline soil.

Sustained Inhibition of Maize Seed-Borne Fusarium Using a Bacillus-Dominated Rhizospheric Stable Core Microbiota with Unique Cooperative Patterns.

Chemical communication in plant-microbe beneficial interactions: a toolbox for precise management of beneficial microbes.

Plant commensal type VII secretion system causes iron leakage from roots to promote colonization.

Listening to plant's Esperanto via root exudates: reprogramming the functional expression of plant growth-promoting rhizobacteria.

Novel fatty acids-governed cannibalism in beneficial rhizosphere Bacillus enhances biofilm formation via a two-component system OmpS/R and toxin transporter.

Signal communication during microbial modulation of root system architecture.

Investigating the effect of substrate binding on the catalytic activity of xylanase.

Biocontrol mechanisms of Bacillus: Improving the efficiency of green agriculture.

Root colonization by beneficial rhizobacteria.

[Isolation and characterization of a p-nitrophenol degradation Pseudomonas sp. strain P3 and construction of a genetically engineered bacterium].

[Degradation of methyl parathion in soil and Chinese chive by strain DLL-1].

[Effect of organophosphorous insecticides on Chinese chive insect pests and their degradation by pesticide-degrading bacterium].

Diversity of organophosphorus pesticide-degrading bacteria in a polluted soil and conservation of their organophosphorus hydrolase genes.

[Horizontal transfer of environmental pollutant-degrading gene and application in bioremediation].

Cloning of the organophosphorus pesticide hydrolase gene clusters of seven degradative bacteria isolated from a methyl parathion contaminated site and evidence of their horizontal gene transfer.

Long term effect of methylparathion contamination on soil microbial community diversity estimated by 16S rRNA gene cloning.

Simultaneous biodegradation of methyl parathion and carbofuran by a genetically engineered microorganism constructed by mini-Tn5 transposon.

Expression, purification and characterization of two thermostable endoglucanases cloned from a lignocellulosic decomposing fungi Aspergillus fumigatus Z5 isolated from compost.

Changes in biochemical and microbiological parameters during the period of rapid composting of dairy manure with rice chaff.

Optimization of survival and spore formation of Paenibacillus polymyxa SQR-21 during bioorganic fertilizer storage.

Comparison of the spores of Paenibacillus polymyxa prepared at different temperatures.

Characterization of a thermostable β-glucosidase from Aspergillus fumigatus Z5, and its functional expression in Pichia pastoris X33.

A novel biochemical route for fuels and chemicals production from cellulosic biomass.

Bacillus subtilis genome editing using ssDNA with short homology regions.

High incidence of plasmids in marine Vibrio species isolated from Mai Po Nature Reserve of Hong Kong.

Production and characterization of acidophilic xylanolytic enzymes from Penicillium oxalicum GZ-2.

Contribution of bacillomycin D in Bacillus amyloliquefaciens SQR9 to antifungal activity and biofilm formation.

Enhanced root colonization and biocontrol activity of Bacillus amyloliquefaciens SQR9 by abrB gene disruption.

Development of a specific real-time PCR assay targeting the poly-γ-glutamic acid synthesis gene, pgsB, for the quantification of Bacillus amyloliquefaciens in solid-state fermentation.

Application of natural blends of phytochemicals derived from the root exudates of Arabidopsis to the soil reveal that phenolic-related compounds predominantly modulate the soil microbiome.

The supernatant of Bacillus pumilus SQR-N43 has antifungal activity towards Rhizoctonia solani.

Promoter analysis and transcription regulation of fus gene cluster responsible for fusaricidin synthesis of Paenibacillus polymyxa SQR-21.

Secretome diversity and quantitative analysis of cellulolytic Aspergillus fumigatus Z5 in the presence of different carbon sources.

Responses of bacterial communities in arable soils in a rice-wheat cropping system to different fertilizer regimes and sampling times.

Enhanced control of cucumber wilt disease by Bacillus amyloliquefaciens SQR9 by altering the regulation of Its DegU phosphorylation.

Enhanced rhizosphere colonization of beneficial Bacillus amyloliquefaciens SQR9 by pathogen infection.

Complete Genome Sequence of Paenibacillus polymyxa SQR-21, a Plant Growth-Promoting Rhizobacterium with Antifungal Activity and Rhizosphere Colonization Ability.

Comparative proteomics analysis of Bacillus amyloliquefaciens SQR9 revealed the key proteins involved in in situ root colonization.

Different continuous cropping spans significantly affect microbial community membership and structure in a vanilla-grown soil as revealed by deep pyrosequencing.

The neutral metallopeptidase NMP1 of Trichoderma guizhouense is required for mycotrophy and self-defence.

Manipulating the banana rhizosphere microbiome for biological control of Panama disease.

Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei.

Success evaluation of the biological control of Fusarium wilts of cucumber, banana, and tomato since 2000 and future research strategies.

pheS , an effective host-genotype-independent counter-selectable marker for marker-free chromosome deletion in Bacillus amyloliquefaciens.

Comparative Genomic Analysis of and Reveals Evolutional Traits for Adaptation to Plant-Associated Habitats.

Enhanced Control of Plant Wilt Disease by a Xylose-Inducible degQ Gene Engineered into Bacillus velezensis Strain SQR9XYQ.

Participating mechanism of a major contributing gene ysnE for auxin biosynthesis in Bacillus amyloliquefaciens SQR9.

Housekeeping gene gyrA, a potential molecular marker for Bacillus ecology study.

A toxin-mediated policing system in optimizes division of labor via penalizing cheater-like nonproducers.

Bacillus velezensis SQR9 inhibition to fungal denitrification responsible for decreased NO emissions from acidic soils.

Beneficial Rhizobacterium Triggers Induced Systemic Resistance of Maize to Gibberella Stalk Rot via Calcium Signaling.

Metabolic interactions affect the biomass of synthetic bacterial biofilm communities.

Nonpathogenic Pseudomonas syringae derivatives and its metabolites trigger the plant "cry for help" response to assemble disease suppressing and growth promoting rhizomicrobiome.

Dissection of rhizosphere microbiome and exploiting strategies for sustainable agriculture.

Beneficial rhizobacterium Bacillus velezensis SQR9 regulates plant nitrogen uptake via endogenous signaling pathway.

Trichoderma-secreted anthranilic acid promotes lateral root development via auxin signaling and RBOHF-induced endodermal cell wall remodeling.