Name: characterization, quantification and compound-specific isotopic analysis of pyrogenic carbon using benzene polycarboxylic acids (bpca)
Uploaded: 2016-05-16T15:00:00
Duration: 8 min 12 s
Description: Watch this Scientific Journal Video about Characterization, Quantification and Compound-specific Isotopic Analysis of Pyrogenic Carbon Using Benzene Polycarboxylic Acids BPCA at JoVE.com

The authors thankfully acknowledge support by the following funding sources: the University of Zurich Research Priority Program "global change and biodiversity", the Swiss National Science Foundation projects 134452, 131922, 143891, 119950 and 134847, and the Deep Carbon Observatory - Deep Energy award 60040915.

1. General Precautions and Preparations&#160;
<ol>
	<li>Use only clean, decalcified (10% HCl bath) and combusted glassware (500 &#176;C for 5 hr), thoroughly cleaned tools and ultrapure, high pressure liquid chromatography (HPLC) grade water and solvents for the entire procedure.</li>
	<li>Freeze dry and homogenize samples with a carbon-free ball mill58 and determine their total organic carbon (TOC) content by elemental analysis59-60 . 
	Note: Purity requirements for chemicals and laboratory equipment are especially high for compound-specific 14C analysis of BPCAs. Include blank assessments49 and swipe tests61 to monitor potential sources of sample contamination.</li>
</ol>
2. HNO3 Digestion
<ol>
	<li>Weigh freeze-dried and homogenized samples (cf. 1.2.) into quartz digestion tubes and cover against dust with aluminum foil.
	<ol>
		<li>For PyC quantification and characterization purposes, use samples containing &#62; 1 mg TOC42. Thus, in the case of soils and sediments, use ca. 200 - 400 mg and in the case of organic-rich samples, such as pure charcoals, use ca. 10 - 20 mg per digestion tube.</li>
		<li>For subsequent compound-specific isotopic analysis of PyC (13C and 14C), make sure the sample contains enough BPCA-C to meet the detection limits of the particular isotope-ratio mass spectrometer that will be used after step 6. If there is no a priori information about a sample&#39;s PyC quantity available (e.g., from previous measurements), first quantify its PyC content (steps 1 - 5) and prepare more sample later if the BPCA-C yields are too low for isotopic analysis. 
		Note: Include blank and reference samples with known PyC and 13C and 14C content (e.g., from the &#34;black carbon reference materials&#34;, cf. results section). This will allow to check the reproducibility of the PyC quantification and enable blank correction calculations of the compound-specific isotopic measurements after analysis.</li>
	</ol>
	</li>
	<li>Add 2 ml of 65% HNO3 into the digestion tubes, use a vortex mixer to assist thorough wetting of the sample and then insert the digestion tubes into the pressure chamber. Close the pressure chambers according to the manual62 and put them into a pre-heated oven at 170 &#176;C for 8 hr. 
	CAUTION: After digestion, let the chambers cool down inside the oven and only open them under the fume hood after they reached room temperature because harmful gases may escape.</li>
	<li>Filter the samples with water into volumetric flasks using disposable glass fiber filters (&#60; 0.7 microns), for instance in glass syringes, and adjust volume to 25 ml. The dilution is needed to stop further digestion. 
	Note: The 25 ml solutions containing the BPCAs can be stored in the refrigerator for up to 2 months before further processing. Digestion can in principle also be performed using other instrumentation, for example with a pressurized microwave system16. In that case, tests should be run with reference materials to check BPCA recoveries and method reproducibility (cf. representative results section).</li>
</ol>
3. Removal of Cations&#160;
<ol>
	<li>For each sample, prepare two glass columns (400 mm height, 15 mm diameter) with 11 g of cation exchange resin per column. Condition the resin inside the columns by consecutively rinsing it with: 2 column volumes of water, 1 column volume of 2 M NaOH, 2 column volumes of water for neutralizing pH, 1 column volume of 2 M HCl, and eventually 2 column volumes of water.</li>
	<li>Check the conductivity of the water, which is rinsed through the resin after its conditioning. The resin is considered as properly conditioned when the conductivity is below 2 &#181;S cm-1.</li>
	<li>Put one half of the sample (i.e., 12.5 ml, cf. step 2.3) on each column, rinse sequentially 5 times with 10 ml water and freeze dry the aqueous solution afterwards. The sample is stable after the freeze-drying and can be stored up to a week before further processing if it is kept dry in a dark and cool place. 
	Note: Use liquid nitrogen to freeze the samples (&#39;snap freezing&#39;) as it avoids the freezing out of HNO3, which can result in a puddle of strong non-freezing acid solution. Make sure the freeze drier is acid proof to a good degree and test for potential contamination by vacuum pump fumes if compound-specific 14C analysis of BPCAs is intended.</li>
</ol>
4. Removal of Apolar Compounds
<ol>
	<li>Condition the C18 solid phase extraction cartridges according to the manufacturer&#39;s instruction manual, i.e., consecutively rinse them with 2.5 ml of methanol, 2.5 ml of water and eventually with 2.5 ml of methanol/water (1:1 v/v).</li>
	<li>Redissolve the freeze-dried residue in 3 ml methanol/water (1:1 v/v). Elute each half of it (1.5 ml) over a separate C18 solid phase extraction cartridge into 2.5 ml test tubes. Rinse the cartridges with another 1 ml of methanol/water (1:1 v/v).</li>
	<li>Dry the test tubes with the sample solution, for instance using a vacuum concentrator, heated to 45 &#176;C and with a vacuum of ca. 50 mbar. Other means of evaporation can also be used, for instance a blow-down system with N2 gas as in step 6.</li>
	<li>Redissolve the residue in the test tube with 1 ml water. Support dissolution with vortex mixer and transfer to 1.5 ml auto sampler vials. 
	Note: Samples can be stored in the refrigerator for up to 3 months at this stage42.</li>
</ol>
5. Chromatography
<ol>
	<li>Prepare solvent A by mixing 20 ml of 85% orthophosphoric acid with 980 ml of water and filter the solution through a disposable glass fiber filter using vacuum. Do not expose solvent A to sunlight and use it within 24 hr in order to avoid algal growth. Use pure HPLC grade acetonitrile as solvent B.</li>
	<li>Prepare standard solutions of commercially available BPCAs (hemimellitic, trimellitic, pyromellitic, pentacarboxylic and mellitic acid) to produce an external standard concentration series (e.g., 6 vials containing 5, 20, 60, 100, 150 and 250 &#181;g of each BPCA mixed together in 1 ml water, respectively).</li>
	<li>Conduct the chromatography using the settings in Table 1 and Table 2 and quantify the BPCA contents by comparing the respective BPCA peak areas to the measurements of the external standard series63.</li>
	<li>Express findings of PyC quantity in BPCA-C/dry weight of the sample [g/kg] or BPCA-C/TOC [%]. Moreover, the qualitative characteristics of the PyC in the samples can be described using proportions of individual BPCAs, e.g., the proportion of B6CA (B6CA/BPCA [%]) indicates the degree of aromatic condensation of the PyC44.</li>
</ol>
6. Wet Oxidation of Purified BPCAs for Subsequent 13C and 14C Analysis
<ol>
	<li>Following step 5.3., collect the individual BPCAs in sufficient quantity (e.g., &#62; 30 &#181;g BPCA-C for current accelerator mass spectrometers49,64) using a fraction collector connected to the HPLC49 and then remove the solvents by blowing down the fractions with a gentle N2 stream while heating them to 70 &#176;C. Only tiny amounts of liquid phosphoric acid, including the BPCAs, will remain in the vial.</li>
	<li>Prepare the oxidizing reagent by dissolving 2 g of Na2S2O8 in 50 ml of water, freshly prepared within 24 hr of use. 
	Note: Recrystallize the sodium persulfate twice to improve its purity by fully dissolving several grams in hot water and then collecting the solid after the water has cooled65-66.</li>
	<li>Redissolve the blown down residue (step 6.1) with 4 ml water and transfer sample to 12 ml gas-tight borosilicate vial. Add 1 ml of oxidizing reagent and close with standard cap containing a butyl rubber septum.</li>
	<li>Purge the gas-tight vial including the aqueous solution with He for 8 min to remove CO2 from the vial and the solution66.</li>
	<li>Oxidize samples in the gas-tight vials by heating them at 100 &#176;C for 60 min.</li>
	<li>Directly analyze the CO2 from the oxidation on isotope-ratio mass spectrometers for 13C content65-66 and on accelerated mass spectrometers for 14C content67-68. 
	Note: Oxidized samples can be stored for at least one week66 before 13C and/or 14C analysis.</li>
</ol>

     

The authors have nothing to disclose.

The BPCA method has several important advantages when compared to other available PyC methods78-79: i) it detects PyC over a broad range of the combustion continuum, i.e., it is sensitive to slightly charred biomass as well as high temperature chars and soot42,70, ii) it can simultaneously characterize16,44,80-81, quantify20,42 and isotopically analyze PyC49-50,66,73,82-83, iii) it is applicable to a very wide range of environmental sample materials42,70, and iv) its methodology has been intensely reviewed and could be put in a consistent framework with the assessments of other PyC methods44,47,70,84-85. For all these reasons, the BPCA approach is arguably the most versatile PyC method available to date, whose underlying assumptions are well constrained and have been continuously tested against other methods.
The above protocol consolidates the strengths of previous BPCA methods into a single procedure, is highly reproducible, simple to employ and can easily be extended and modified to specific requirements. For example, when chromatography is conducted with a pH gradient instead of an organic solvent, on-line isotope-ratio monitoring of BPCAs is possible42, obviating the need for the wet oxidation step. Similarly, the removal of cations and/or apolar compounds (steps 3 and 4) may be skipped when it is known that particular samples do not contain any such compounds (e.g., in some cases of laboratory-produced chars).
Like every PyC method, the BPCA procedure has some limitations, too. In this regard, it is important to note that the BPCA approach inherently underestimates total PyC quantity in the samples: the method destroys large parts of the PyC polycyclic structures in order to extract their BPCA building blocks, thus not quantitatively recovering all PyC in the form of BPCAs20,86. Conversion factors had been proposed in the past to translate BPCA yields into total PyC contents. However, finding one correct conversion factor is practically impossible because of the heterogeneous degree of aromatic condensation in most chars41,48,80,86. In many cases, PyC quantities of samples are compared relative to each other42,81,87-88. We then suggest not to use any conversion factors and to simply report BPCA data &#34;as measured&#34;48. In particular cases, when BPCA yields are taken to estimate absolute PyC quantities24,89-90, the originally published conversion factor20 of 2.27 seems appropriate as it converts the BPCA yields into conservative estimates of PyC contents86.
Another difficulty with PyC methods is that they are potentially sensitive to interfering, non-PyC materials and/or that PyC is produced during the analysis itself, leading to an overestimation of the actual PyC content in samples70. The BPCA approach is very robust against such interfering materials70, does not produce any PyC by itself16,70,86 and is conservative in nature (cf. above paragraph). Even graphite, a chemically very similar material to PyC but of petrogenic origin, does not interfere with BPCA measurements(Schneider, M. P. W. unpublished results. Zurich, (2013)). So far, the only known non-PyC interferences for the BPCA method are some condensed, aromatic pigments of fungi91, which should be quantitatively negligible for the vast majority of studies86. The BPCA method with its simultaneous qualitative, quantitative and 13C and 14C isotopic information is thus an excellent tool for the investigation of PyC in various disciplines.

In a complete combustion process, biomass or fossil fuel is converted into CO2, H2O and inorganic residues (ash). However, under local or temporal oxygen limitations, combustion becomes incomplete and pyrolysis takes place, producing a solid organic residue known as char1. These charred residues are also referred to as pyrogenic organic matter (PyOM) and mainly consist of pyrogenic carbon (PyC) or, synonymously, black carbon (BC)2-4. Charring processes are omnipresent and can be part of both natural and anthropogenic combustion5-6. Wildfire is an important natural process, intrinsic to most ecosystems, which produces a significant quantity of PyC each year4,7-10. Similarly, the burning of fossil fuel for energy production in industry and transport presents an important anthropogenic source of PyC11-13. Both sources contribute to the ubiquity of PyC in the environment: PyC is present in the air, in the form of aerosols13-14, in water as particulate or dissolved organic matter15-17, as well as in ice cores18-19, soils20-21, and sediments22-24 in sizes varying from m to nm (e.g., large charred tree trunk after a forest fire or nano-scale soot particles that escape a diesel engine exhaust). The ubiquity of PyC in the environment is not only due to large production rates but also to its long persistence and relative stability against degradation25-26. Although exact turnover times have not yet been established and may depend upon specific environmental conditions27-28, it seems clear that PyC is less readily decomposed into CO2 than most other forms of organic carbon29-30. This observation has an important implication for the global C cycle: as charred materials store PyC for a relatively long time, they sequester C in organic forms that would otherwise be rapidly respired as CO2, thus reducing atmospheric greenhouse gas concentrations over time31-32.
Besides the climate mitigating aspect, chars have further environmentally relevant properties. Their high porosity, large surface area and negative surface charge can immobilize hazardous compounds33 and improve soil fertility34-35. The recognition of chars as a potentially beneficial soil amendment led to the emerging field of so-called biochar technology36. Biochar will likely be produced on large scales in the coming years and thus significantly increase PyC abundance in soils37. Moreover, the occurrence of wildfires and the burning of fossil fuels are also projected to remain high over the course of the 21th century, continuously contributing large quantities of PyC to the environment11,38-39. Another increasingly important source of PyC is likely to be nanotechnology that also uses PyC-like compounds40-41. It is thus crucial to detect, characterize and quantify these pyrogenic materials accurately in order to investigate their properties and understand their role in the environment.
Here, we present the use of a state-of-the-art compound-specific approach to analyze PyC in various samples: the most recent generation of the benzene polycarboxylic acid (BPCA) method42. This method is broadly applicable within PyC research as it directly targets the &#34;backbone&#34; of PyC: its polycyclic condensed structures that form during the thermal treatment43-45 and that are therefore inherent to all the various forms of PyC5,46. However, these structures are not directly assessable by chromatographic means, due to their size and heterogeneity. In order to chromatographically analyze such pyrogenic compounds, PyC is first digested with nitric acid under high temperature and pressure, which breaks the large polycyclic structures down into its building blocks, the individual BPCAs (cf. Figure 1). The BPCAs are then, after a few purification steps, amenable to chromatographic analysis20,42. PyC is thus isolated and analyzed on a molecular level and can be used to quantify PyC abundance in environmental compartments20,42. The BPCA method additionally characterizes the investigated PyC when relative yields of B3-, B4-, B5- and B6CA are compared (cf. Figure 1): The respective proportion of differently carboxylated BPCAs is linked to the size of the original polycyclic structures and is therefore indicative of PyC&#39;s quality and pyrolysis temperature44,47-48. Moreover, the presented method allows for the determination of the C isotopic composition (13C and 14C) of PyC because the individual BPCAs, deriving directly from pure PyC structures, can be isotopically analyzed after isolation (cf. Figure 1, steps 5 and 6)49. Compound-specific isotopic analysis of PyC is of great interest50 as it can be used, e.g., to distinguish between the precursor biomass of chars in tropical regions51-52, to derive the age of charred materials53-54 or to trace PyC in C cycling studies with an isotopic label26,55-56. Further information about PyC as well as the BPCA method&#39;s history, development and applications in particular can be found in Wiedemeier, 201457, from where part of the above paragraphs and part of the discussion were compiled.

<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>ball mill</td>
			<td>Retsch</td>
			<td>N/A</td>
			<td>ball mill with carbon-free grinding jars and balls (Retsch MM 200 with agate grinding jars and balls)&#160;</td>
		</tr>
		<tr>
			<td>combustion oven</td>
			<td>Nabertherm</td>
			<td>N/A</td>
			<td>combustion oven/muffle furnace with a temperature of 500 &#176;C (Nabertherm L40/11 or similar)</td>
		</tr>
		<tr>
			<td>pressure bombs with PTFE pressure chambers, 
			quartz digestion tubes with quartz lids</td>
			<td>Seif Aufschlusstechnik, Unterschleissheim, Germany</td>
			<td>N/A</td>
			<td>Helma U. Rudolf Seif Aufschlusstechnik 
			Fastlingerring 67 
			85716 Unterschleissheim 
			Germany 
			Tel: (+49) 89 3108181</td>
		</tr>
		<tr>
			<td>vortex mixer</td>
			<td>common lab supply</td>
			<td>N/A</td>
			<td></td>
		</tr>
		<tr>
			<td>oven&#160;</td>
			<td>Thermo Scientific</td>
			<td>50051010</td>
			<td>drying oven with constant temperature (Thermo Scientific Heraeus or similar)</td>
		</tr>
		<tr>
			<td>vacuum manifold system 
			with PTFE connectors</td>
			<td>Machery Nagel&#160;</td>
			<td>Chromabond 
			730151 
			730106</td>
			<td>ftp://ftp.mn-net.com/english/Instruction_leaflets/Chromatography/SPE/CHROMABOND_VK_DE_EN.pdf</td>
		</tr>
		<tr>
			<td>reusable glass syringes with disposable glass fibre filters</td>
			<td>Machery Nagel&#160;</td>
			<td>730172 
			730192</td>
			<td>http://www.mn-net.com/SPEStart/SPEaccessories/EmptySPEcolumns/tabid/4285/language/en-US/Default.aspx</td>
		</tr>
		<tr>
			<td>25 mL volumetric glass flasks</td>
			<td>common lab supply</td>
			<td>N/A</td>
			<td>In contrast to all other glassware, do not combust to ensure volumetric accuracy. Instead, clean in acid bath, with ultrasound and with ultrapure water.</td>
		</tr>
		<tr>
			<td>chromatographic glass columns with frit and PTFE stopcock and glass wool</td>
			<td>custom made</td>
			<td>N/A</td>
			<td>dimensions of glass columns: 
			ca. 40cm long, ca. 1.5 cm in diameter</td>
		</tr>
		<tr>
			<td>cation exchange resin</td>
			<td>Sigma Aldrich</td>
			<td>217514</td>
			<td>Dowex 50 WX8 400</td>
		</tr>
		<tr>
			<td>conductivity meter</td>
			<td>WTW</td>
			<td>300243</td>
			<td>LF 320 Set</td>
		</tr>
		<tr>
			<td>100 mL conical flasks for freeze drier</td>
			<td>common lab supply&#160;</td>
			<td>N/A</td>
			<td></td>
		</tr>
		<tr>
			<td>liquid nitrogen</td>
			<td>common lab equipment</td>
			<td>N/A</td>
			<td>for snap-freezing the aequous solution after removal of cations</td>
		</tr>
		<tr>
			<td>freeze dryer</td>
			<td>Christ</td>
			<td>N/A</td>
			<td>Alpha 2-4 LD plus</td>
		</tr>
		<tr>
			<td>C18 solid phase extraction cartridges</td>
			<td>Supelco</td>
			<td>52603-U</td>
			<td>http://www.sigmaaldrich.com/catalog/product/supelco/52603u?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td>2.5 mL glass test tubes</td>
			<td>Agilent Technologies</td>
			<td>5022-6534</td>
			<td>http://www.chem.agilent.com/store/en_US/Prod-5022-6534/5022-6534?navAction=push&#38;navCount=0</td>
		</tr>
		<tr>
			<td>concentrator&#160;</td>
			<td>Eppendorf</td>
			<td>5305000.100</td>
			<td></td>
		</tr>
		<tr>
			<td>1.5 mL HPLC autosampler vials</td>
			<td>depending on HPLC</td>
			<td>N/A</td>
			<td></td>
		</tr>
		<tr>
			<td>6 mL fraction collector vials</td>
			<td>depending on HPLC</td>
			<td>N/A</td>
			<td></td>
		</tr>
		<tr>
			<td>high purity N2 gas</td>
			<td>common lab equipment</td>
			<td>N/A</td>
			<td></td>
		</tr>
		<tr>
			<td>12 mL borosilicate gas tight vials</td>
			<td>Labco</td>
			<td>538W</td>
			<td>http://www.labco.co.uk/europe/gas.htm#doublewad12ml</td>
		</tr>
		<tr>
			<td>needles</td>
			<td>B Braun</td>
			<td>4665643</td>
			<td>http://www.bbraun.ch/cps/rde/xchg/cw-bbraun-de-ch/hs.xsl/products.html?prid=PRID00000510</td>
		</tr>
		<tr>
			<td>high purity He gas</td>
			<td>common lab equipment</td>
			<td>N/A</td>
			<td></td>
		</tr>
		<tr>
			<td></td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Materials</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>HNO3 (65%) p.a.</td>
			<td>Sigma Aldrich</td>
			<td>84378</td>
			<td>http://www.sigmaaldrich.com/catalog/product/sial/84378?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td>2M HCl</td>
			<td>Sigma Aldrich</td>
			<td>258148</td>
			<td>mix with ultrapure water to achieve 2M solution</td>
		</tr>
		<tr>
			<td>2M NaOH</td>
			<td>Sigma Aldrich</td>
			<td>71691</td>
			<td>mix with ultrapure water to achieve 2M solution</td>
		</tr>
		<tr>
			<td>methanol</td>
			<td>Sigma Aldrich</td>
			<td>34860</td>
			<td>http://www.sigmaaldrich.com/catalog/product/sial/34860?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td>water</td>
			<td>Milli-Q</td>
			<td>Z00QSV0WW</td>
			<td>Type 1 grade, optimized for low carbon</td>
		</tr>
		<tr>
			<td>orthophosphoric acid</td>
			<td>Sigma Aldrich</td>
			<td>79606</td>
			<td>http://www.sigmaaldrich.com/catalog/product/fluka/79606?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td>acetonitrile</td>
			<td>Sigma Aldrich</td>
			<td>34851</td>
			<td>http://www.sigmaaldrich.com/catalog/product/sial/34851?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td>C18 reversed phase column</td>
			<td>Agilent Technologies</td>
			<td>685975-902</td>
			<td>Agilent Poroshell 120 SB-C18 (4.6 x 100 mm)</td>
		</tr>
		<tr>
			<td>Na2S2O8, sodium persulfate</td>
			<td>Sigma Aldrich</td>
			<td>71890</td>
			<td>http://www.sigmaaldrich.com/catalog/product/sial/71890?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td></td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>BPCA standards</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>trimellitic acid</td>
			<td>Sigma Aldrich</td>
			<td>92119</td>
			<td>http://www.sigmaaldrich.com/catalog/product/fluka/92119?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td>hemimellitic acid</td>
			<td>Sigma Aldrich</td>
			<td>51520</td>
			<td>http://www.sigmaaldrich.com/catalog/product/aldrich/51520?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td>pyromellitic acid</td>
			<td>Sigma Aldrich</td>
			<td>83181</td>
			<td>http://www.sigmaaldrich.com/catalog/search?term=83181&#38;interface=All&#38;N=0&#38;mode=match%20partialmax&#38;lang=de&#38;region=CH&#38;focus=product</td>
		</tr>
		<tr>
			<td>benzenepentacarboxylic acid</td>
			<td>Sigma Aldrich</td>
			<td>S437107</td>
			<td>http://www.sigmaaldrich.com/catalog/product/aldrich/s437107?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td>mellitic acid</td>
			<td>Sigma Aldrich</td>
			<td>M2705</td>
			<td>http://www.sigmaaldrich.com/catalog/product/aldrich/m2705?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td></td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>oxidation standars</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>phtalic acid</td>
			<td>Sigma-Aldrich</td>
			<td>80010</td>
			<td>http://www.sigmaaldrich.com/catalog/product/sial/80010?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td>sucrose</td>
			<td>Sigma-Aldrich</td>
			<td>S7903</td>
			<td>http://www.sigmaaldrich.com/catalog/product/sigma/s7903?lang=de&#38;region=CH</td>
		</tr>
		<tr>
			<td></td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>black carbon reference materials</td>
			<td>University of Zurich</td>
			<td>N/A</td>
			<td>http://www.geo.uzh.ch/en/units/physische-geographie-boden-biogeographie/services/black-carbon-reference-materials</td>
		</tr>
	</tbody>
</table>

characterization, quantification and compound-specific isotopic analysis of pyrogenic carbon using benzene polycarboxylic acids (bpca)

Fire-derived, pyrogenic carbon (PyC), sometimes called black carbon (BC), is the carbonaceous solid residue of biomass and fossil fuel combustion, such as char and soot. PyC is ubiquitous in the environment due to its long persistence, and its abundance might even increase with the projected increase in global wildfire activity and the continued burning of fossil fuel. PyC is also increasingly produced from the industrial pyrolysis of organic wastes, which yields charred soil amendments (biochar). Moreover, the emergence of nanotechnology may also result in the release of PyC-like compounds to the environment. It is thus a high priority to reliably detect, characterize and quantify these charred materials in order to investigate their environmental properties and to understand their role in the carbon cycle.
Here, we present the benzene polycarboxylic acid (BPCA) method, which allows the simultaneous assessment of PyC&#39;s characteristics, quantity and isotopic composition (13C and 14C) on a molecular level. The method is applicable to a very wide range of environmental sample materials and detects PyC over a broad range of the combustion continuum, i.e., it is sensitive to slightly charred biomass as well as high temperature chars and soot. The BPCA protocol presented here is simple to employ, highly reproducible, as well as easily extendable and modifiable to specific requirements. It thus provides a versatile tool for the investigation of PyC in various disciplines, ranging from archeology and environmental forensics to biochar and carbon cycling research.

We recommend to test the method set-up by measuring a suite of well-described PyC materials (&#34;black carbon reference materials&#34;) that have extensively been used for various method developments and comparisons in the literature44,48,69-77. Information on the reference materials is available from the University of Zurich (http://www.geo.uzh.ch/en/units/physische-geographie-boden-biogeographie/services/black-carbon-reference-materials).
The described procedure allows baseline separation of all BPCA target compounds by HPLC. The chromatograms of the reference materials &#39;chernozem&#39; (silty soil with a significant PyC content) and grass char (made from Oryza Sativa) are shown in Figure 2. By adjusting the chromatography parameters in Tables 1 and 2 (e.g., chromatography temperature, pH of solvent A or flow rate, etc.), the separation can be further modified for specific needs42,63.
Quantitative analysis of the reference materials&#39; chromatograms with external standards (step 5.3.) should yield the PyC values depicted in Figure 3. Please note that slight changes in the procedure (e.g., the omission of step 3 or 4 in specific cases), can lead to higher PyC values. Generally, recoveries should be checked with pure BPCA standards:spiked reference materials can help to detect disproportionate losses in steps 3 and 4 and yield information about the chromatography performance in step 5 42,63.
Table 3 shows the 13C and 14C values that are obtained when purified BPCAs of reference materials are analyzed for their carbon isotopic content after step 6. For reliable results, it is imperative to collect sufficient amounts of BPCA-C (e.g., &#62; 30 &#181;g BPCA-C for current accelerator mass spectrometers, cf. Figure 4) and to take all possible measures to minimize contamination of the sample by extraneous C 49.
Besides checking the method set-up with reference materials as described above, it is highly advisable to prepare and measure samples in replicates, both for PyC quantification (step 5) and subsequent compound-specific 13C and 14C analyses of BPCAs (step 6).
<img alt="Figure 1" src="/files/ftp_upload/53922/53922fig1.jpg" /> 
Figure 1: The BPCA Analysis Procedure. In the protocol step 2, the PyC polycyclic aromatic condensed structures are digested, producing the different BPCAs, which are then further cleaned (steps 3 and 4) and chromatographically analyzed and separated (step 5). After wet oxidation (step 6), the purified BPCAs are amenable to compound-specific isotopic analysis (13C and 14C) on isotope-ratio mass spectrometers. <a href="https://www.jove.com/files/ftp_upload/53922/53922fig1large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 2" src="/files/ftp_upload/53922/53922fig2.jpg" /> 
Figure 2: Chromatograms for BPCA Separation. Shown are the black carbon reference materials &#34;chernozem&#34; (a) and &#34;grass char&#34; (b). Baseline separation is achieved for all the BPCA target compounds (B6CA; B5CA; 1,2,4,5-. 1,2,3,5-, 1,2,3,4-B4CA; 1,2,4-, 1,2,3-B3CA)42. Information on the black carbon reference materials is available from the University of Zurich (http://www.geo.uzh.ch/en/units/physische-geographie-boden-biogeographie/services/black-carbon-reference-materials). This figure was modified from Wiedemeier et al. 201342 and is reprinted with permission from Elsevier. <a href="https://www.jove.com/files/ftp_upload/53922/53922fig2large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 3" src="/files/ftp_upload/53922/53922fig3.jpg" /> 
Figure 3: Replicated PyC Measurements of Different Black Carbon Reference Materials. Error bars for laboratory replicates are smaller than symbol size and the coefficient of variation averaged 5% (min: 1%, max: 10%).This figure was modified from Wiedemeier et al. 201342 and is reprinted with permission from Elsevier. <a href="https://www.jove.com/files/ftp_upload/53922/53922fig3large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 4" src="/files/ftp_upload/53922/53922fig4.jpg" /> 
Figure 4: Radiocarbon (14C) Values for B5CA and B6CA Isolated from a Modern and a Fossil Char. The given error is composed of corrections for instrumental accelerator mass spectrometer background and of the blank for wet oxidation. The solid gray line represents an idealized line for the mixture of the real F14C value of the respective sample and the determined mean external contamination. This figure was modified from Gierga et al. 201449 and is reprinted with permission from Elsevier. <a href="https://www.jove.com/files/ftp_upload/53922/53922fig4large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>mobile phase A</td>
			<td>20 ml ortho phosphoric acid (85%) in 980 ml ultrapure water</td>
		</tr>
		<tr>
			<td>mobile phase B</td>
			<td>acetonitrile&#160;</td>
		</tr>
		<tr>
			<td>column</td>
			<td>C18 reversed phase (cf. material list for details)</td>
		</tr>
		<tr>
			<td>column temperature</td>
			<td>15 &#176;C</td>
		</tr>
		<tr>
			<td>flow rate</td>
			<td>0.4 ml min-1</td>
		</tr>
		<tr>
			<td>identification</td>
			<td>retention time, UV absorption at 216 nm</td>
		</tr>
		<tr>
			<td>quantification</td>
			<td>external standards of BPCAs</td>
		</tr>
		<tr>
			<td>pressure&#160;</td>
			<td>ca. 120 bar</td>
		</tr>
	</tbody>
</table>
Table 1: Chromatography Settings.
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>time&#160;</td>
			<td>mobile phase B</td>
		</tr>
		<tr>
			<td>[min]</td>
			<td>[vol %]</td>
		</tr>
		<tr>
			<td>0</td>
			<td>0.5</td>
		</tr>
		<tr>
			<td>5</td>
			<td>0.5</td>
		</tr>
		<tr>
			<td>25.9</td>
			<td>30</td>
		</tr>
		<tr>
			<td>26</td>
			<td>95</td>
		</tr>
		<tr>
			<td>28</td>
			<td>95</td>
		</tr>
		<tr>
			<td>28.1</td>
			<td>0.5</td>
		</tr>
		<tr>
			<td>30</td>
			<td>0.5</td>
		</tr>
	</tbody>
</table>
Table 2: Mixing Gradient of Mobile Phases.
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td></td>
			<td colspan="2">bulk char</td>
			<td colspan="2">BPCA</td>
		</tr>
		<tr>
			<td></td>
			<td colspan="4">&#948;13C [&#8240; vs. VPDB]</td>
		</tr>
		<tr>
			<td>chestnut char</td>
			<td>-27.4a</td>
			<td>&#177;0.4a</td>
			<td>-27.7</td>
			<td>&#177;0.8</td>
		</tr>
		<tr>
			<td>maize char</td>
			<td>-12.9</td>
			<td>&#177;0.4</td>
			<td>-13.0</td>
			<td>&#177;0.4</td>
		</tr>
		<tr>
			<td></td>
			<td colspan="4">F14C [%]</td>
		</tr>
		<tr>
			<td>modern char</td>
			<td>1.142b</td>
			<td>&#177;0.004b</td>
			<td>1.13</td>
			<td>&#177;0.013</td>
		</tr>
		<tr>
			<td>fossil char</td>
			<td>0.003b</td>
			<td>&#177;0.001b</td>
			<td>0.014</td>
			<td>&#177;0.001</td>
		</tr>
	</tbody>
</table>
Table 3: Carbon Isotopic Values (&#948;13C and F14C) of Reference Char Materials and Compound-Specific Isotopic Analysis of the Corresponding BPCAs. The BPCA values represent B6CA and B5CA that were collected simultaneously in step 5. However, isotopic analysis of individual BPCAs can be achieved analogously when BPCAs are collected separately. Bulk char data is from Yarnes et al. (2011) 73 for the chestnut char (a) and from Gierga et al. (2014) 49 for the fossil and modern char (b). Errors for the &#948;13C measurements are standard errors from triplicates while errors for the F14C measurements (bulk char: ETH-50456, ETH-50458; BPCA: ETH-62324, ETH-62335) are derived from error propagation64.

Watch this Scientific Journal Video about Characterization, Quantification and Compound-specific Isotopic Analysis of Pyrogenic Carbon Using Benzene Polycarboxylic Acids BPCA at JoVE.com

Characterization, Quantification and Compound-specific Isotopic Analysis of Pyrogenic Carbon Using Benzene Polycarboxylic Acids BPCA

We present the benzene polycarboxylic acid (BPCA) method for assessing pyrogenic carbon (PyC) in the environment. The compound-specific approach uniquely provides simultaneous information about the characteristics, quantity and isotopic composition (13C and 14C) of PyC.

Characterization, Quantification and Compound-specific Isotopic Analysis of Pyrogenic Carbon Using Benzene Polycarboxylic Acids (BPCA)

Fire-derived, pyrogenic carbon (PyC), sometimes called black carbon (BC), is the carbonaceous solid residue of biomass and fossil fuel combustion, such as ...

The overall goal of this molecular marker method is to characterize, quantify and isotopically analyze the Pyrogenic Carbon fraction in environmental samples. This method can help answer key questions in various fields, ranging from archaeology and environmental forensics, to biochar and Carbon cycling research. The main advantages of this technique are detection of pyrogenic Carbon over a broad range of the combustion continuum.Simultaneous characterization, quantification, and isotopic analysis of pyrogenic Carbon. And applicability to a very wide range of environmental sample materials. Demonstrating the sample preparation and chromatography will be Ulrich Hanke, a grad student from our laboratory.The subsequent isotopic analysis of the purified target compounds will be shown by Negar Haghipour, lab coordinator at ETH Zurich. To begin this procedure weigh previously freeze-dried and homogenized samples into quartz digestion tubes, and cover against dust with aluminum foil. Use only clean, decalcified, and combastic glassware, thoroughly cleaned tools, and ultra-pure chromatography grade water and solvents for the entire procedure.Add two milliliters of 65%nitric acid into the digestion tubes. Use a vortex mixer to assist thorough wetting of each sample. Following this, insert the digestion tubes into a pressure chamber.Close the pressure chamber according to the manual and place it into a preheated oven at 170 degrees Celsius for eight hours. After removing the digestion tubes from the cooled pressure chamber, filter the samples with water into Volumetric flasks, using disposable glass fiber filters. Then adjust the volume to 25 milliliters with water.For each sample, prepare two glass columns with 11 grams of cation exchange resin per column. Condition the resin inside the columns by consecutively rinsing them with water, two molar sodium hydroxide, and two molar hydrochloric acid. Check the conductivity of the water.Which is rinsed through the resin after its conditioning. Next transfer one half of the sample onto each column, rinse sequentially five times with 10 milliliters of water. Then freeze-dry the aqueous solutions afterwards.Condition C18 solid phase extraction cartridges according to the manufacturers instruction manual. Following this, re-dissolve each freeze-dried residue in three milliliters of methanol and water. Elute each half of the sample over a separate C18 solid phase extraction cartridge into 2.5 milliliter test tubes.Then, rinse the cartridges with one milliliter of methanol and water. Dry the test tubes with the sample solutions using a vacuum concentrator heated to 45 degrees Celsius, and with a vacuum of approximately 50 millibar. After drying, re-dissolve each residue with one milliliter of water and mix with a vortex mixer.Then, transfer the solutions to 1.5 milliliter auto-sampler vials. For the chromatographic analysis, prepare solvent A by mixing 20 milliliters of 85%orthophosphoric acid with 980 milliliters of water and filter the solution through a disposable glass fiber filter using vacuum. Prepare standard solutions of commercially available benzene polycarboxylic acids of BPCAs to produce an external standard concentration series.Conduct the chromatography, and quantify the BPCA contents, by comparing the respective BPCA peak areas to the measurements of external standard series. Purity requirement for chemical and laboratory equipment are especially high for compound specific Carbon-14 analysis of BPCAs. Blank assessment and swipe tests are important to monitor potential source of sample contamination.If compound specific Carbon-13 and Carbon-14 analyses of the pyrogenic Carbon fraction are intended, repeat the chromatography several times for each sample, and collect the individual BPCAs in sufficient quantity using a fraction collector connected to the HPLC. Remove the solvent, by blowing down the fractions with a gentle nitrogen stream, while heating them to 70 degrees Celsius. Next, prepare the oxidizing reagent by dissolving two grams of sodium persulfate in 15 milliliters of water.Re-dissolve each residue with four milliliters of water, and transfer the samples to 12 milliliter gas-tight, borosilicate vials. Then, add one milliliter of oxidizing reagent, and close each vial with a standard cap containing a butyl rubber septum. Purge the gas-tight vials containing the aqueous solutions with helium for eight minutes to remove Carbon dioxide from the vial and the solution.Following this, oxide the samples in the gas-tight vials by heating them at 100 degrees Celsius for 60 minutes. After allowing the samples to cool to room temperature, directly analyze the Carbon dioxide from the oxidation on an isotope ratio mass spectrometer for Carbon-13 content and on an accelerated mass spectrometer for Carbon-14 content. The described procedure allows baseline separation of all BPCA target compounds by HPLC and chromatograms of the referenced materials tramazem and grass-char are shown here.By adjusting the chromatography parameters the separation can be further modified for specific needs. Quantitative analysis of the referenced materials chromatograms with external standards should yield the pyrogenic carbon values depicted here. The Carbon-13 and Carbon-14 values that are obtained when purified BPCAs of referenced materials are analyzed for their carbon isotopic content are listed here.Once mastered this technique can be done in three working days. Therefore, sample throughput is a matter of how many samples are processed simultaneously. Measuring a dozen samples per week in duplicates and with isotopic information is easily achievable.After watching this video, you should have a good understanding of how to perform the indubitable steps for the successful analysis of pyrogenic Carbon on the compound specific level.

Research

JoVE Journal

Chemistry

Qualitative Identification of Carboxylic Acids, Boronic Acids, and Amines Using Cruciform Fluorophores

Molecular cruciforms are X-shaped systems in which two conjugation axes intersect at a central core. If one axis of these molecules is substituted with ...

High Precision Zinc Isotopic Measurements Applied to Mouse Organs

We present a procedure to measure with high precision zinc isotope ratios in mouse organs. Zinc is composed of 5 stable isotopes (64Zn, 66Zn, 67Zn, 68Zn ...

Preparation of Carbon Nanosheets at Room Temperature

Amphiphilic molecules equipped with a reactive, carbon-rich "oligoyne" segment consisting of conjugated carbon-carbon triple bonds self-assemble into ...

Functionalization of Single-walled Carbon Nanotubes with Thermo-reversible Block Copolymers and Characterization by Small-angle Neutron Scattering

We demonstrate a protocol for single-walled carbon nanotube functionalization using thermo-sensitive PEO-PPO-PEO triblock copolymers in an aqueous ...

Using Capillary Electrophoresis to Quantify Organic Acids from Plant Tissue: A Test Case Examining Coffea arabica Seeds

Using Capillary Electrophoresis to Quantify Organic Acids from Plant Tissue: A Test Case Examining Coffea arabica Seeds

Carboxylic acids are organic acids containing one or more terminal carboxyl (COOH) functional groups. Short chain carboxylic acids (SCCAs; carboxylic ...

In Situ Detection and Single Cell Quantification of Metal Oxide Nanoparticles Using Nuclear Microprobe Analysis

In Situ Detection and Single Cell Quantification of Metal Oxide Nanoparticles Using Nuclear Microprobe Analysis

Micro-analytical techniques based on chemical element imaging enable the localization and quantification of chemical composition at the cellular level. ...

Peptide and Protein Quantification Using Automated Immuno-MALDI (iMALDI)

Peptide and Protein Quantification Using Automated Immuno-MALDI iMALDI

Mass spectrometry (MS) is one of the most commonly used technologies for quantifying proteins in complex samples, with excellent assay specificity as a ...

Time-resolved Photophysical Characterization of Triplet-harvesting Organic Compounds at an Oxygen-free Environment Using an iCCD Camera

Here, we present a sensible method of the acquisition and analysis of time-resolved photoluminescence using an ultrafast iCCD camera. This system enables ...

Raman and IR Spectroelectrochemical Methods as Tools to Analyze Conjugated Organic Compounds

In the presented work, two spectroelectrochemical techniques are discussed as tools for the analysis of the structural changes occurring in the molecule ...

Using Cyclic Voltammetry, UV-Vis-NIR, and EPR Spectroelectrochemistry to Analyze Organic Compounds

Cyclic voltammetry (CV) is a technique used in the analysis of organic compounds. When this technique is combined with electron paramagnetic resonance ...