Department of Bionanoscience,
Kavli Institute of Nanoscience,
Department of Bionanoscience, Kavli Institute of Nanoscience
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Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing.
Journal of molecular biology Jun, 2005 | Pubmed ID: 15896350
Unusual compactness of a polyproline type II structure.
Proceedings of the National Academy of Sciences of the United States of America Aug, 2005 | Pubmed ID: 16085707
Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination.
Protein science : a publication of the Protein Society May, 2006 | Pubmed ID: 16597824
Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution.
Journal of molecular biology Oct, 2006 | Pubmed ID: 16949611
Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae.
Journal of molecular biology Feb, 2007 | Pubmed ID: 17118400
Small-angle X-ray scattering from RNA, proteins, and protein complexes.
Annual review of biophysics and biomolecular structure , 2007 | Pubmed ID: 17284163
Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory.
Biophysical journal Nov, 2007 | Pubmed ID: 17604318
Size and shape of detergent micelles determined by small-angle X-ray scattering.
The journal of physical chemistry. B Nov, 2007 | Pubmed ID: 17924686
Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids.
Journal of the American Chemical Society Dec, 2007 | Pubmed ID: 17990882
Long single alpha-helical tail domains bridge the gap between structure and function of myosin VI.
Nature structural & molecular biology Jun, 2008 | Pubmed ID: 18511944
Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble.
Journal of the American Chemical Society Sep, 2008 | Pubmed ID: 18722445
The complete VS ribozyme in solution studied by small-angle X-ray scattering.
Structure (London, England : 1993) Sep, 2008 | Pubmed ID: 18786398
A repulsive field: advances in the electrostatics of the ion atmosphere.
Current opinion in chemical biology Dec, 2008 | Pubmed ID: 19081286
Riboswitch conformations revealed by small-angle X-ray scattering.
Methods in molecular biology (Clifton, N.J.) , 2009 | Pubmed ID: 19381558
Mixing and matching detergents for membrane protein NMR structure determination.
Journal of the American Chemical Society Jun, 2009 | Pubmed ID: 19425578
Quantitative modeling and optimization of magnetic tweezers.
Biophysical journal Jun, 2009 | Pubmed ID: 19527664
Single-molecule magnetic tweezers studies of type IB topoisomerases.
Methods in molecular biology (Clifton, N.J.) , 2009 | Pubmed ID: 19763943
Do conformational biases of simple helical junctions influence RNA folding stability and specificity?
RNA (New York, N.Y.) Dec, 2009 | Pubmed ID: 19850914
The ligand-free state of the TPP riboswitch: a partially folded RNA structure.
Journal of molecular biology Feb, 2010 | Pubmed ID: 19925806
Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding.
RNA (New York, N.Y.) Apr, 2010 | Pubmed ID: 20194520
Torsional sensing of small-molecule binding using magnetic tweezers.
Nucleic acids research Nov, 2010 | Pubmed ID: 20624816
Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data.
Biophysical journal Aug, 2010 | Pubmed ID: 20713015
Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs.
Methods in enzymology , 2009 | Pubmed ID: 20946792
Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.
Nature methods Dec, 2010 | Pubmed ID: 20953173
Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids.
Nature communications , 2011 | Pubmed ID: 21863006
A method to track rotational motion for use in single-molecule biophysics.
The Review of scientific instruments Oct, 2011 | Pubmed ID: 22047303
Electromagnetic torque tweezers: a versatile approach for measurement of single-molecule twist and torque.
Nano letters Jul, 2012 | Pubmed ID: 22642488
Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering.
Physical review. E, Statistical, nonlinear, and soft matter physics Aug, 2012 | Pubmed ID: 23005779
Studying genomic processes at the single-molecule level: introducing the tools and applications.
Nature reviews. Genetics Jan, 2013 | Pubmed ID: 23150038
Dependence of micelle size and shape on detergent alkyl chain length and head group.
PloS one , 2013 | Pubmed ID: 23667481
Structural and torsional properties of the RAD51-dsDNA nucleoprotein filament.
Nucleic acids research Aug, 2013 | Pubmed ID: 23703213
Understanding Nucleic Acid-Ion Interactions.
Annual review of biochemistry Mar, 2014 | Pubmed ID: 24606136
Structure, mechanics, and binding mode heterogeneity of LEDGF/p75-DNA nucleoprotein complexes revealed by scanning force microscopy.
Nanoscale Apr, 2014 | Pubmed ID: 24632996
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