Josh D. Neufeld

Serial analysis of ribosomal sequence tags (SARST): a high-throughput method for profiling complex microbial communities.

Fluorophore-labeled primers improve the sensitivity, versatility, and normalization of denaturing gradient gel electrophoresis.

Unexpectedly high bacterial diversity in arctic tundra relative to boreal forest soils, revealed by serial analysis of ribosomal sequence tags.

Distribution and phylogeny of hexachlorocyclohexane-degrading bacteria in soils from Spain.

Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray.

Methodological considerations for the use of stable isotope probing in microbial ecology.

Handlebar: a flexible, web-based inventory manager for handling barcoded samples.

DNA stable-isotope probing.

Who eats what, where and when? Isotope-labelling experiments are coming of age.

Witnessing the last supper of uncultivated microbial cells with Raman-FISH.

Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism.

Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology.

Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics.

Scratching the surface of the rare biosphere with ribosomal sequence tag primers.

Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands.

Methane assimilation and trophic interactions with marine Methylomicrobium in deep-water coral reef sediment off the coast of Norway.

Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment.

Metagenomic analysis of isotopically enriched DNA.

Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Omics for understanding microbial functional dynamics.

Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater.

Aquarium nitrification revisited: Thaumarchaeota are the dominant ammonia oxidizers in freshwater aquarium biofilters.

Active autotrophic ammonia-oxidizing bacteria in biofilm enrichments from simulated creek ecosystems at two ammonium concentrations respond to temperature manipulation.

Butyric acid- and dimethyl disulfide-assimilating microorganisms in a biofilter treating air emissions from a livestock facility.

Nonlinear electrophoresis for purification of soil DNA for metagenomics.

PANDAseq: PAired-eND Assembler for Illumina sequences.