Fiona McCarthy

Construction and manipulation of an infectious clone of the bovine herpesvirus 1 genome maintained as a bacterial artificial chromosome.

Rapid and efficient construction of recombinant bovine herpesvirus 1 genomes.

Construction of a gene inactivation library for Bovine herpesvirus 1 using infectious clone technology.

Genetic analysis of bovine viral diarrhoea viruses from Australia.

Differential detergent fractionation for non-electrophoretic eukaryote cell proteomics.

Modeling a whole organ using proteomics: the avian bursa of Fabricius.

AgBase: a functional genomics resource for agriculture.

AgBase: a unified resource for functional analysis in agriculture.

Non-electrophoretic differential detergent fractionation proteomics using frozen whole organs.

Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome.

Prediction of peptides observable by mass spectrometry applied at the experimental set level.

Gene Ontology annotation quality analysis in model eukaryotes.

The essential and non-essential genes of Bovine herpesvirus 1.

Sequential detergent extraction prior to mass spectrometry analysis.

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays.

Understanding animal viruses using the Gene Ontology.

Introduction to the proceedings of the Avian Genomics and Gene Ontology Annotation Workshop.

The Chicken Gene Nomenclature Committee report.

Facilitating functional annotation of chicken microarray data.

Structural and functional-annotation of an equine whole genome oligoarray.

Transcriptional and pathway analysis in the hypothalamus of newly hatched chicks during fasting and delayed feeding.

Re-annotation is an essential step in systems biology modeling of functional genomics data.

Proteome profile of the developing maize (Zea mays L.) rachis.

GOModeler--a tool for hypothesis-testing of functional genomics datasets.

Analysis of Bovine Viral Diarrhea Viruses-infected monocytes: identification of cytopathic and non-cytopathic biotype differences.

AgBase: supporting functional modeling in agricultural organisms.

The proteogenomic mapping tool.

Systemic response to Campylobacter jejuni infection by profiling gene transcription in the spleens of two genetic lines of chickens.

Transcriptome-based differentiation of closely-related Miscanthus lines.

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

Cross-Ontology multi-level association rule mining in the Gene Ontology.

Developing a biocuration workflow for AgBase, a non-model organism database.

Stallion sperm transcriptome comprises functionally coherent coding and regulatory RNAs as revealed by microarray analysis and RNA-seq.

Current clinical immunotherapy targets in advanced nonsmall cell lung cancer (NSCLC).

Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships.

Inflammatory cytokines in human pancreatic cancer.

De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum.

Transgenic soya bean seeds accumulating β-carotene exhibit the collateral enhancements of oleate and protein content traits.

Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC.

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Transcriptome response to heat stress in a chicken hepatocellular carcinoma cell line.

Third Report on Chicken Genes and Chromosomes 2015.

Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates.

HPIDB 2.0: a curated database for host-pathogen interactions.

Resources and Recommendations for Using Transcriptomics to Address Grand Challenges in Comparative Biology.

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.

RNA Sequencing Exposes Adaptive and Immune Responses to Intrauterine Growth Restriction in Fetal Sheep Islets.

Acute Ischemia Induced by High Density Culture Increases Cytokine Expression and Diminishes the Function and Viability of Highly Purified Human Islets of Langerhans.