Kazuharu Arakawa

KEGG-based pathway visualization tool for complex omics data.

A comprehensive software suite for the analysis of cDNAs.

GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes.

GPAC: benchmarking the sensitivity of genome informatics analysis to genome annotation completeness.

On the interplay of gene positioning and the role of rho-independent terminators in Escherichia coli.

Noise-reduction filtering for accurate detection of replication termini in bacterial genomes.

Validating the significance of genomic properties of Chi sites from the distribution of all octamers in Escherichia coli.

In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs.

Multiple high-throughput analyses monitor the response of E. coli to perturbations.

MEGU: pathway mapping web-service based on KEGG and SVG.

Restauro-G: a rapid genome re-annotation system for comparative genomics.

Comparative study of circadian oscillatory network models of Drosophila.

Genome Projector: zoomable genome map with multiple views.

Selection effects on the positioning of genes and gene structures from the interplay of replication and transcription in bacterial genomes.

The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection.

A web server for interactive and zoomable Chaos Game Representation images.

Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API.

Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index.

G-language genome analysis environment with REST and SOAP web service interfaces.

Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes.

KBWS: an EMBOSS associated package for accessing bioinformatics web services.

Metabolic flux analysis and visualization.

Validation of bacterial replication termination models using simulation of genomic mutations.

Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade.

Measures of compositional strand bias related to replication machinery and its applications.

Merging multiple omics datasets in silico: statistical analyses and data interpretation.

Quantitative assay for TALEN activity at endogenous genomic loci.

Analysis of DNA repair and protection in the Tardigrade Ramazzottius varieornatus and Hypsibius dujardini after exposure to UVC radiation.

GEMBASSY: an EMBOSS associated software package for comprehensive genome analyses.

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Undesigned selection for replication termination of bacterial chromosomes.

Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes.

Novel mitochondria-targeted heat-soluble proteins identified in the anhydrobiotic Tardigrade improve osmotic tolerance of human cells.

Evaluation of the impact of RNA preservation methods of spiders for de novo transcriptome assembly.

G-Links: a gene-centric link acquisition service.

De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions.

No evidence for extensive horizontal gene transfer from the draft genome of a tardigrade.

Genome sequencing of a single tardigrade Hypsibius dujardini individual.

Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein.

Rearing and observation of immature stages of the hoverfly (Diptera, Syrphidae).

Glucan synthase-like 2 is indispensable for paramylon synthesis in Euglena gracilis.

Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus.

Analysis of repetitive amino acid motifs reveals the essential features of spider dragline silk proteins.

eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria.

Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis 'Somei-yoshino' across the Japanese archipelago.

An integrative description of Macrobiotus shonaicus sp. nov. (Tardigrada: Macrobiotidae) from Japan with notes on its phylogenetic position within the hufelandi group.