Raluca Gordan

Informative priors based on transcription factor structural class improve de novo motif discovery.

A nucleosome-guided map of transcription factor binding sites in yeast.

Using DNA duplex stability information for transcription factor binding site discovery.

Distinguishing direct versus indirect transcription factor-DNA interactions.

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading.

Finding regulatory DNA motifs using alignment-free evolutionary conservation information.

Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing.

Identification of cell cycle-regulated, putative hyphal genes in Candida albicans.

Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape.

Stability selection for regression-based models of transcription factor-DNA binding specificity.

TFBSshape: a motif database for DNA shape features of transcription factor binding sites.

Protein-DNA binding: complexities and multi-protein codes.

COUGER--co-factors associated with uniquely-bound genomic regions.

Absence of a simple code: how transcription factors read the genome.

Sequence specificity incompletely defines the genome-wide occupancy of Myc.

Protein-DNA binding in the absence of specific base-pair recognition.

Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex.

Quantitative modeling of transcription factor binding specificities using DNA shape.

Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes.

HDAC inhibitors cause site-specific chromatin remodeling at PU.1-bound enhancers in K562 cells.

Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi.

Transcription Factor-DNA Binding Motifs in Saccharomyces cerevisiae: Tools and Resources.

Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.

Expression level is a key determinant of E2F1-mediated cell fate.

Whole-Genome and Epigenomic Landscapes of Etiologically Distinct Subtypes of Cholangiocarcinoma.

Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding.

Inkjet-printed point-of-care immunoassay on a nanoscale polymer brush enables subpicomolar detection of analytes in blood.

Incomplete MyoD-induced transdifferentiation is associated with chromatin remodeling deficiencies.

Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding.

Toward deciphering the mechanistic role of variations in the Rep1 repeat site in the transcription regulation of SNCA gene.

The vitamin D receptor gene as a determinant of survival in pancreatic cancer patients: Genomic analysis and experimental validation.

Genetic variation determines VEGF-A plasma levels in cancer patients.

DNA Sequence Context Controls the Binding and Processivity of the T7 DNA Primase.

QBiC-Pred: quantitative predictions of transcription factor binding changes due to sequence variants.

Unexpected implications of STAT3 acetylation revealed by genetic encoding of acetyl-lysine.