Environmental Processes Branch,
Environmental Laboratory,
Environmental Processes Branch, Environmental Laboratory
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Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state.
Genes & development Feb, 2013 | Pubmed ID: 23392610
Playing in the mud-using gene expression to assess contaminant effects on sediment dwelling invertebrates.
Ecotoxicology (London, England) Dec, 2003 | Pubmed ID: 14680323
Dnm1 forms spirals that are structurally tailored to fit mitochondria.
The Journal of cell biology Sep, 2005 | Pubmed ID: 16186251
Disruption of nucleocytoplasmic trafficking of cyclin D1 and topoisomerase II by sanguinarine.
BMC cell biology , 2006 | Pubmed ID: 16512916
Toxicogenomics in regulatory ecotoxicology.
Environmental science & technology Jul, 2006 | Pubmed ID: 16856717
Gene expression profiles in fathead minnow exposed to 2,4-DNT: correlation with toxicity in mammals.
Toxicological sciences : an official journal of the Society of Toxicology Nov, 2006 | Pubmed ID: 16917068
Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine.
BMC bioinformatics , 2006 | Pubmed ID: 17217515
Daphnia magna ecotoxicogenomics provides mechanistic insights into metal toxicity.
Environmental science & technology Feb, 2007 | Pubmed ID: 17328222
Comparative neurotoxicity of two energetic compounds, hexanitrohexaazaisowurtzitane and hexahydro-1,3,5-trinitro-1,3,5-triazine, in the earthworm Eisenia fetida.
Environmental toxicology and chemistry / SETAC May, 2007 | Pubmed ID: 17521142
The N terminus of the herpes simplex virus type 1 triplex protein, VP19C, cannot be detected on the surface of the capsid shell by using an antibody (hemagglutinin) epitope tag.
Journal of virology Aug, 2007 | Pubmed ID: 17522217
Structural features of the scaffold interaction domain at the N terminus of the major capsid protein (VP5) of herpes simplex virus type 1.
Journal of virology Sep, 2007 | Pubmed ID: 17581992
Subacute toxicity of oral 2,6-dinitrotoluene and 1,3,5-trinitro-1,3,5-triazine (RDX) exposure to the northern bobwhite (Colinus virginianus).
Environmental toxicology and chemistry / SETAC Jul, 2007 | Pubmed ID: 17665690
Mitochondrially targeted effects of berberine [Natural Yellow 18, 5,6-dihydro-9,10-dimethoxybenzo(g)-1,3-benzodioxolo(5,6-a) quinolizinium] on K1735-M2 mouse melanoma cells: comparison with direct effects on isolated mitochondrial fractions.
The Journal of pharmacology and experimental therapeutics Nov, 2007 | Pubmed ID: 17704354
Dielectrophoretic manipulation and real-time electrical detection of single-nanowire bridges in aqueous saline solutions.
Small (Weinheim an der Bergstrasse, Germany) Sep, 2007 | Pubmed ID: 17705314
Effects of subchronic exposure to 2,6-dinitrotoluene in the northern bobwhite (Colinus virginianus).
Environmental toxicology and chemistry / SETAC Oct, 2007 | Pubmed ID: 17867889
Uptake of hexanitrohexaazaisowurtzitane (CL-20) by the earthworm Eisenia fetida through dermal contact.
The Science of the total environment Feb, 2008 | Pubmed ID: 17996277
Toxicogenomic assessment of the population level impacts of contaminants.
Integrated environmental assessment and management Oct, 2007 | Pubmed ID: 18046807
Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks.
BMC bioinformatics , 2007 | Pubmed ID: 18047712
Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida.
BMC bioinformatics , 2007 | Pubmed ID: 18047730
Toxicogenomic analysis provides new insights into molecular mechanisms of the sublethal toxicity of 2,4,6-trinitrotoluene in Eisenia fetida.
Environmental science & technology Dec, 2007 | Pubmed ID: 18186358
Conventional and immunoelectron microscopy of mitochondria.
Methods in molecular biology (Clifton, N.J.) , 2007 | Pubmed ID: 18314746
Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida.
BMC genomics , 2008 | Pubmed ID: 18366604
Perturbation of gene expression and steroidogenesis with in vitro exposure of fathead minnow ovaries to ketoconazole.
Marine environmental research Jul, 2008 | Pubmed ID: 18423573
Interaction between Epsin/Yap180 adaptors and the scaffolds Ede1/Pan1 is required for endocytosis.
Molecular biology of the cell Jul, 2008 | Pubmed ID: 18448668
Small capsid protein pORF65 is essential for assembly of Kaposi's sarcoma-associated herpesvirus capsids.
Journal of virology Jul, 2008 | Pubmed ID: 18463150
Chemoselective nanowire fuses: chemically induced cleavage and electrical detection of carbon nanofiber bridges.
Small (Weinheim an der Bergstrasse, Germany) Jun, 2008 | Pubmed ID: 18535991
Sanguinarine cytotoxicity on mouse melanoma K1735-M2 cells--nuclear vs. mitochondrial effects.
Biochemical pharmacology Dec, 2008 | Pubmed ID: 18692024
GOfetcher: a database with complex searching facility for gene ontology.
Bioinformatics (Oxford, England) Nov, 2008 | Pubmed ID: 18728045
Gene expression profiling in Daphnia magna part I: concentration-dependent profiles provide support for the No Observed Transcriptional Effect Level.
Environmental science & technology Aug, 2008 | Pubmed ID: 18767695
Gene expression profiling in Daphnia magna, part II: validation of a copper specific gene expression signature with effluent from two copper mines in California.
Environmental science & technology Aug, 2008 | Pubmed ID: 18767696
Batch Blast Extractor: an automated blastx parser application.
BMC genomics , 2008 | Pubmed ID: 18831775
ILOOP--a web application for two-channel microarray interwoven loop design.
BMC genomics , 2008 | Pubmed ID: 18831776
Self-assembly of Epstein-Barr virus capsids.
Journal of virology Apr, 2009 | Pubmed ID: 19158247
Sublethal effects of subacute exposure to RDX (1,3,5-trinitro-1,3,5-triazine) in the northern bobwhite (Colinus virginianus).
Environmental toxicology and chemistry / SETAC Jun, 2009 | Pubmed ID: 19173548
Asymmetric enrichment of PIE-1 in the Caenorhabditis elegans zygote mediated by binary counterdiffusion.
The Journal of cell biology Feb, 2009 | Pubmed ID: 19221192
Global gene expression in rat brain and liver after oral exposure to the explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX).
Chemical research in toxicology Apr, 2009 | Pubmed ID: 19239275
Endocrine disrupting chemicals in fish: developing exposure indicators and predictive models of effects based on mechanism of action.
Aquatic toxicology (Amsterdam, Netherlands) May, 2009 | Pubmed ID: 19261338
Neurochemical and electrophysiological diagnosis of reversible neurotoxicity in earthworms exposed to sublethal concentrations of CL-20.
Environmental science and pollution research international Jan, 2010 | Pubmed ID: 19274471
RDX and miRNA Expression in B6C3F1 Mice.
Environmental health perspectives Mar, 2009 | Pubmed ID: 19337499
Neurotoxicogenomic investigations to assess mechanisms of action of the munitions constituents RDX and 2,6-DNT in Northern bobwhite (Colinus virginianus).
Toxicological sciences : an official journal of the Society of Toxicology Jul, 2009 | Pubmed ID: 19417177
How does graphene grow? Easy access to well-ordered graphene films.
Small (Weinheim an der Bergstrasse, Germany) Oct, 2009 | Pubmed ID: 19565616
Biomarker discovery and transcriptomic responses in Daphnia magna exposed to munitions constituents.
Environmental science & technology Jun, 2009 | Pubmed ID: 19569350
Staphylococcal enterotoxin A induces small clusters of HLA-DR1 on B cells.
PloS one , 2009 | Pubmed ID: 19587800
An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data.
BMC genomics , 2009 | Pubmed ID: 19594885
Gene expression responses in male fathead minnows exposed to binary mixtures of an estrogen and antiestrogen.
BMC genomics , 2009 | Pubmed ID: 19594897
I. Effects of a dopamine receptor antagonist on fathead minnow, Pimephales promelas, reproduction.
Ecotoxicology and environmental safety May, 2010 | Pubmed ID: 19783049
II: Effects of a dopamine receptor antagonist on fathead minnow dominance behavior and ovarian gene expression in the fathead minnow and zebrafish.
Ecotoxicology and environmental safety May, 2010 | Pubmed ID: 19896709
Differentiation of pluripotent stem cells on multiwalled carbon nanotubes.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference , 2009 | Pubmed ID: 19964415
Supramolecular assemblies formed on an epitaxial graphene superstructure.
Angewandte Chemie (International ed. in English) Mar, 2010 | Pubmed ID: 20135656
Influence of ovarian stage on transcript profiles in fathead minnow (Pimephales promelas) ovary tissue.
Aquatic toxicology (Amsterdam, Netherlands) Jul, 2010 | Pubmed ID: 20363515
From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite.
Physiological genomics Jul, 2010 | Pubmed ID: 20406850
A novel gene network inference algorithm using predictive minimum description length approach.
BMC systems biology , 2010 | Pubmed ID: 20522257
Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk.
BMC systems biology , 2010 | Pubmed ID: 20579396
MEX-5 enrichment in the C. elegans early embryo mediated by differential diffusion.
Development (Cambridge, England) Aug, 2010 | Pubmed ID: 20627961
Dimethylaminopyridine derivatives of lupane triterpenoids are potent disruptors of mitochondrial structure and function.
Bioorganic & medicinal chemistry Aug, 2010 | Pubmed ID: 20673631
Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference.
BMC bioinformatics , 2010 | Pubmed ID: 20946592
Quail Genomics: a knowledgebase for Northern bobwhite.
BMC bioinformatics , 2010 | Pubmed ID: 20946596
Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks.
BMC bioinformatics , 2010 | Pubmed ID: 20946602
Reverse engineering adverse outcome pathways.
Environmental toxicology and chemistry / SETAC Jan, 2011 | Pubmed ID: 20963852
Investigations of transcript expression in fathead minnow (Pimephales promelas) brain tissue reveal toxicological impacts of RDX exposure.
Aquatic toxicology (Amsterdam, Netherlands) Jan, 2011 | Pubmed ID: 20965580
In silico identification of conserved microRNAs and their target transcripts from expressed sequence tags of three earthworm species.
Computational biology and chemistry Dec, 2010 | Pubmed ID: 21030313
Generation, analysis and functional annotation of expressed sequence tags from the sheepshead minnow (Cyprinodon variegatus).
BMC genomics , 2010 | Pubmed ID: 21047385
Identification and optimization of classifier genes from multi-class earthworm microarray dataset.
PloS one , 2010 | Pubmed ID: 21060837
Systems biology: leading the revolution in ecotoxicology.
Environmental toxicology and chemistry / SETAC Feb, 2011 | Pubmed ID: 21072840
In vitro gene regulatory networks predict in vivo function of liver.
BMC systems biology , 2010 | Pubmed ID: 21073692
A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2,4DNT.
BMC genomics , 2010 | Pubmed ID: 21143786
Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida.
PloS one , 2010 | Pubmed ID: 21170345
Analysis of common and specific mechanisms of liver function affected by nitrotoluene compounds.
PloS one , 2011 | Pubmed ID: 21346803
Predictive minimum description length principle approach to inferring gene regulatory networks.
Advances in experimental medicine and biology , 2011 | Pubmed ID: 21431544
Downstream bioengineering of ACE chromosomes for incorporation of site-specific recombination cassettes.
Methods in molecular biology (Clifton, N.J.) , 2011 | Pubmed ID: 21431724
Effects of a short-term exposure to the fungicide prochloraz on endocrine function and gene expression in female fathead minnows (Pimephales promelas).
Aquatic toxicology (Amsterdam, Netherlands) Jun, 2011 | Pubmed ID: 21470553
Conserved toxic responses across divergent phylogenetic lineages: a meta-analysis of the neurotoxic effects of RDX among multiple species using toxicogenomics.
Ecotoxicology (London, England) May, 2011 | Pubmed ID: 21516383
Genomic investigation of year-long and multigenerational exposures of fathead minnow to the munitions compound RDX.
Environmental toxicology and chemistry / SETAC Aug, 2011 | Pubmed ID: 21538488
Evaluation of natural and nitramine binding energies to 3-D models of the S1S2 domains in the N-methyl-D-aspartate receptor.
Journal of molecular modeling Apr, 2012 | Pubmed ID: 21735122
Assessment of chemical mixtures and groundwater effects on Daphnia magna transcriptomics.
Environmental science & technology Jan, 2012 | Pubmed ID: 21744839
Building quantitative prediction models for tissue residue of two explosives compounds in earthworms from microarray gene expression data.
Environmental science & technology Jan, 2012 | Pubmed ID: 21776976
Ecotoxicogenomics to support ecological risk assessment: a case study with bisphenol A in fish.
Environmental science & technology Jan, 2012 | Pubmed ID: 21786754
First-passage time analysis of a one-dimensional diffusion-reaction model: application to protein transport along DNA.
BMC bioinformatics , 2011 | Pubmed ID: 22165905
Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction.
BMC bioinformatics , 2011 | Pubmed ID: 22165918
RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags.
BMC bioinformatics , 2011 | Pubmed ID: 22166047
Gene expression analysis of CL-20-induced reversible neurotoxicity reveals GABA(A) receptors as potential targets in the earthworm Eisenia fetida.
Environmental science & technology Jan, 2012 | Pubmed ID: 22191394
A graphical systems model and tissue-specific functional gene sets to aid transcriptomic analysis of chemical impacts on the female teleost reproductive axis.
Mutation research Aug, 2012 | Pubmed ID: 22227403
CAPRG: sequence assembling pipeline for next generation sequencing of non-model organisms.
PloS one , 2012 | Pubmed ID: 22319566
Phase I trial of the combination of flavopiridol and imatinib mesylate in patients with Bcr-Abl+ hematological malignancies.
Cancer chemotherapy and pharmacology Jun, 2012 | Pubmed ID: 22349810
Learning the structure of gene regulatory networks from time series gene expression data.
BMC genomics Dec, 2011 | Pubmed ID: 22369588
A systems toxicology approach to elucidate the mechanisms involved in RDX species-specific sensitivity.
Environmental science & technology Jul, 2012 | Pubmed ID: 22697906
Short-term study investigating the estrogenic potency of diethylstilbesterol in the fathead minnow (Pimephales promelas).
Environmental science & technology Jul, 2012 | Pubmed ID: 22708615
State Space Model with hidden variables for reconstruction of gene regulatory networks.
BMC systems biology , 2011 | Pubmed ID: 22784622
Transfer-free electrical insulation of epitaxial graphene from its metal substrate.
Nano letters Sep, 2012 | Pubmed ID: 22871144
Multiple environmental stressors elicit complex interactive effects in the western fence lizard (Sceloporus occidentalis).
Ecotoxicology (London, England) Nov, 2012 | Pubmed ID: 22975894
Motif Participation by Genes in E. coli Transcriptional Networks.
Frontiers in physiology , 2012 | Pubmed ID: 23055976
Interspecific effects of 4A-DNT (4-amino-2,6-dinitrotoluene) and RDX (1,3,5-trinitro-1,3,5-triazine) in Japanese quail, Northern bobwhite, and Zebra finch.
Ecotoxicology (London, England) Mar, 2013 | Pubmed ID: 23161369
Delayed myelosuppression with acute exposure to hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and environmental degradation product hexahydro-1-nitroso-3,5-dinitro-1,3,5-triazine (MNX) in rats.
Toxicology and applied pharmacology Feb, 2013 | Pubmed ID: 23219714
The mitochondrial fission adaptors Caf4 and Mdv1 are not functionally equivalent.
PloS one , 2012 | Pubmed ID: 23300936
A phase I trial of vorinostat and alvocidib in patients with relapsed, refractory, or poor prognosis acute leukemia, or refractory anemia with excess blasts-2.
Clinical cancer research : an official journal of the American Association for Cancer Research Apr, 2013 | Pubmed ID: 23515411
Surface-sensitive conductivity measurement using a micro multi-point probe approach.
The Review of scientific instruments Mar, 2013 | Pubmed ID: 23556824
Current Perspectives on the Use of Alternative Species in Human Health and Ecological Hazard Assessments.
Environmental health perspectives Jun, 2013 | Pubmed ID: 23771518
The good, the bad, and the toxic: approaching hormesis in Daphnia magna exposed to an energetic compound.
Environmental science & technology Aug, 2013 | Pubmed ID: 23898970
Vital imaging of multicellular spheroids.
Methods in molecular biology (Clifton, N.J.) , 2014 | Pubmed ID: 24052355
Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment.
BMC bioinformatics , 2013 | Pubmed ID: 24268022
Effects of BDE-209 contaminated sediments on zebrafish development and potential implications to human health.
Environment international Feb, 2014 | Pubmed ID: 24317228
Using transcriptomic tools to evaluate biological effects across effluent gradients at a diverse set of study sites in Minnesota, USA.
Environmental science & technology Feb, 2014 | Pubmed ID: 24433150
Identification of biomarkers that distinguish chemical contaminants based on gene expression profiles.
BMC genomics , 2014 | Pubmed ID: 24678894
Differential effects and potential adverse outcomes of ionic silver and silver nanoparticles in vivo and in vitro.
Environmental science & technology Apr, 2014 | Pubmed ID: 24684273
Integrated approach to explore the mechanisms of aromatase inhibition and recovery in fathead minnows (Pimephales promelas).
General and comparative endocrinology Jul, 2014 | Pubmed ID: 24704562
Endocrinology: advances through omics and related technologies.
General and comparative endocrinology Jul, 2014 | Pubmed ID: 24726988
M13 bacteriophage production for large-scale applications.
Bioprocess and biosystems engineering Oct, 2014 | Pubmed ID: 24728964
Validation of a genomics-based hypothetical adverse outcome pathway: 2,4-dinitrotoluene perturbs PPAR signaling thus impairing energy metabolism and exercise endurance.
Toxicological sciences : an official journal of the Society of Toxicology Sep, 2014 | Pubmed ID: 24893713
Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress.
BMC genomics , 2014 | Pubmed ID: 25016412
DNA binding and condensation properties of the herpes simplex virus type 1 triplex protein VP19C.
PloS one , 2014 | Pubmed ID: 25121591
New derivatives of lupane triterpenoids disturb breast cancer mitochondria and induce cell death.
Bioorganic & medicinal chemistry Nov, 2014 | Pubmed ID: 25245673
Top-level dynamics and the regulated gene response of feed-forward loop transcriptional motifs.
Physical review. E, Statistical, nonlinear, and soft matter physics Sep, 2014 | Pubmed ID: 25314472
Natural Variation in Fish Transcriptomes: Comparative Analysis of the Fathead Minnow (Pimephales promelas) and Zebrafish (Danio rerio).
PloS one , 2014 | Pubmed ID: 25493933
Systematic Omics Analysis Review (SOAR) tool to support risk assessment.
PloS one , 2014 | Pubmed ID: 25531884
MicroRNA and messenger RNA profiling reveals new biomarkers and mechanisms for RDX induced neurotoxicity.
BMC genomics , 2014 | Pubmed ID: 25559034
Systems toxicology identifies mechanistic impacts of 2-amino-4,6-dinitrotoluene (2A-DNT) exposure in Northern Bobwhite.
BMC genomics , 2015 | Pubmed ID: 26251320
Aub and Ago3 Are Recruited to Nuage through Two Mechanisms to Form a Ping-Pong Complex Assembled by Krimper.
Molecular cell Aug, 2015 | Pubmed ID: 26295961
Ecotoxicogenomics: Microarray interlaboratory comparability.
Chemosphere Feb, 2016 | Pubmed ID: 26363320
Adverse Outcome Pathways for Regulatory Applications: Examination of Four Case Studies With Different Degrees of Completeness and Scientific Confidence.
Toxicological sciences : an official journal of the Society of Toxicology Nov, 2015 | Pubmed ID: 26500288
Ionotropic GABA receptor antagonism-induced adverse outcome pathways for potential neurotoxicity biomarkers.
Biomarkers in medicine , 2015 | Pubmed ID: 26508561
Transcriptional Network Growing Models Using Motif-Based Preferential Attachment.
Frontiers in bioengineering and biotechnology , 2015 | Pubmed ID: 26528473
Relating suborganismal processes to ecotoxicological and population level endpoints using a bioenergetic model.
Ecological applications : a publication of the Ecological Society of America Sep, 2015 | Pubmed ID: 26552275
A weight of evidence assessment approach for adverse outcome pathways.
Regulatory toxicology and pharmacology : RTP Mar, 2016 | Pubmed ID: 26724267
Predicting Fecundity of Fathead Minnows (Pimephales promelas) Exposed to Endocrine-Disrupting Chemicals Using a MATLAB®-Based Model of Oocyte Growth Dynamics.
PloS one , 2016 | Pubmed ID: 26756814
Fish connectivity mapping: linking chemical stressors by their mechanisms of action-driven transcriptomic profiles.
BMC genomics , 2016 | Pubmed ID: 26822894
Tissue explant co-culture model of the hypothalamic-pituitary-gonadal-liver axis of the fathead minnow (Pimephales promelas) as a predictive tool for endocrine disruption.
Environmental toxicology and chemistry / SETAC Mar, 2016 | Pubmed ID: 26931821
Predicting chemical bioavailability using microarray gene expression data and regression modeling: A tale of three explosive compounds.
BMC genomics , 2016 | Pubmed ID: 26956490
The Next Generation of Risk Assessment Multiyear Study- Highlights of Findings, Applications to Risk Assessment and Future Directions.
Environmental health perspectives Apr, 2016 | Pubmed ID: 27091369
Daphnia magna's sense of competition: intra-specific interactions (ISI) alter life history strategies and increase metals toxicity.
Ecotoxicology (London, England) Aug, 2016 | Pubmed ID: 27151402
Effects of the anti-microbial contaminant triclocarban, and co-exposure with the androgen 17β-trenbolone, on reproductive function and ovarian transcriptome of the fathead minnow (Pimephales promelas).
Environmental toxicology and chemistry / SETAC Jun, 2016 | Pubmed ID: 27312088
Novel enhanced applications of QSPR models: Temperature dependence of aqueous solubility.
Journal of computational chemistry Jun, 2016 | Pubmed ID: 27338156
Robyn A. Barbato1,
Natàlia Garcia-Reyero2,
Karen Foley1,
Robert Jones1,
Zoe Courville3,
Thomas Douglas4,
Edward Perkins2,
Charles M. Reynolds4
1Biogeochemical Sciences Branch, Cold Regions Research and Engineering Laboratory, US Army Engineer Research & Development Center, Hanover, NH,
2Environmental Processes Branch, Environmental Laboratory, US Army Engineer Research & Development Center, Vicksburg, MS,
3Terrestrial and Cryospheric Scienes Branch, Cold Regions Research and Engineering Laboratory, US Army Engineer Research & Development Center, Hanover, NH,
4Biogeochemical Sciences Branch, Cold Regions Research and Engineering Laboratory, US Army Engineer Research & Development Center, Fairbanks, AK
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