Institute of Organic Chemistry
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A model nucleoside for electron injection into DNA: 5-pyrenyl-2'-deoxyribose.
Angewandte Chemie (International ed. in English) Aug, 2002 | Pubmed ID: 12203430
Electron injection into DNA: synthesis and spectroscopic properties of pyrenyl-modified oligonucleotides.
Chemistry (Weinheim an der Bergstrasse, Germany) Nov, 2002 | Pubmed ID: 12397589
Exciton and excimer formation in DNA at room temperature.
Chemphyschem : a European journal of chemical physics and physical chemistry Aug, 2002 | Pubmed ID: 12503153
Reductive electron transfer and transport of excess electrons in DNA.
Angewandte Chemie (International ed. in English) Jun, 2003 | Pubmed ID: 12800162
Metal-mediated DNA base pairing and metal arrays in artificial DNA: towards new nanodevices.
Angewandte Chemie (International ed. in English) Jul, 2003 | Pubmed ID: 12876728
Pyrene as a fluorescent probe for DNA base radicals.
Chemical communications (Cambridge, England) Aug, 2003 | Pubmed ID: 12932012
Synthesis of DNA with phenanthridinium as an artificial DNA base.
The Journal of organic chemistry Feb, 2004 | Pubmed ID: 14750800
Phenanthridinium as an artificial base and charge donor in DNA.
Angewandte Chemie (International ed. in English) Mar, 2004 | Pubmed ID: 15054791
1-Ethynylpyrene as a tunable and versatile molecular beacon for DNA.
Chembiochem : a European journal of chemical biology Jun, 2004 | Pubmed ID: 15174171
Ultrafast proton-coupled electron-transfer dynamics in pyrene-modified pyrimidine nucleosides: model studies towards an understanding of reductive electron transport in DNA.
Chemphyschem : a European journal of chemical physics and physical chemistry May, 2004 | Pubmed ID: 15179723
Detection of single base mismatches and abasic sites using phenanthridinium as an artificial DNA base and charge donor.
Organic & biomolecular chemistry Jan, 2005 | Pubmed ID: 15602596
Reductive electron transfer in phenothiazine-modified DNA is dependent on the base sequence.
Chemistry (Weinheim an der Bergstrasse, Germany) Mar, 2005 | Pubmed ID: 15685707
Real-time spectroscopic and chemical probing of reductive electron transfer in DNA.
Angewandte Chemie (International ed. in English) Mar, 2005 | Pubmed ID: 15742326
1-ethynylpyrene-modified guanine and cytosine as optical labels for DNA hybridization.
Organic & biomolecular chemistry Jun, 2005 | Pubmed ID: 15917887
Electron transfer chemistry between DNA and DNA-binding tripeptides.
Biochemistry Sep, 2005 | Pubmed ID: 16128576
Structure-sensitive and self-assembled helical pyrene array based on DNA architecture.
Angewandte Chemie (International ed. in English) May, 2006 | Pubmed ID: 16619327
8-(Pyren-1-yl)-2'-deoxyguanosine as an optical probe for DNA hybridization and for charge transfer with small peptides.
Bioorganic & medicinal chemistry letters Jun, 2006 | Pubmed ID: 16621544
DNA as a supramolecular scaffold for the helical arrangement of a stack of 1-ethynylpyrene chromophores.
Organic & biomolecular chemistry Jun, 2006 | Pubmed ID: 16729121
Base pair motions control the rates and distance dependencies of reductive and oxidative DNA charge transfer.
Proceedings of the National Academy of Sciences of the United States of America Jul, 2006 | Pubmed ID: 16801552
The search for single DNA damage among millions of base pairs: DNA glycosylases trapped at work.
Angewandte Chemie (International ed. in English) Aug, 2006 | Pubmed ID: 16888824
Perylene-3,4:9,10-tetracarboxylic acid bisimide dye as an artificial DNA base surrogate.
Organic letters Sep, 2006 | Pubmed ID: 16956184
Electron transfer processes in DNA: mechanisms, biological relevance and applications in DNA analytics.
Natural product reports Dec, 2006 | Pubmed ID: 17119642
Pyrene-modified guanosine as fluorescent probe for DNA modulated by charge transfer.
Bioorganic & medicinal chemistry Jan, 2008 | Pubmed ID: 17509886
DNA labelling topologies for monitoring DNA-protein complex formation by fluorescence anisotropy.
Nucleosides, nucleotides & nucleic acids , 2007 | Pubmed ID: 18066831
Phenothiazine as a redox-active DNA base substitute: comparison with phenothiazine-modified uridine.
Organic & biomolecular chemistry Jan, 2008 | Pubmed ID: 18075645
Fluorescent DNA base modifications and substitutes: multiple fluorophore labeling and the DETEQ concept.
Annals of the New York Academy of Sciences , 2008 | Pubmed ID: 18096856
Perylene bisimide dimers as fluorescent "glue" for DNA and for base-mismatch detection.
Angewandte Chemie (International ed. in English) , 2008 | Pubmed ID: 18288663
Nucleotide insertion and bypass synthesis of pyrene- and BODIPY-modified oligonucleotides by DNA polymerases.
Chemical communications (Cambridge, England) Mar, 2008 | Pubmed ID: 18338050
Thiazole orange and Cy3: improvement of fluorescent DNA probes with use of short range electron transfer.
The Journal of organic chemistry Jun, 2008 | Pubmed ID: 18442293
Fluorescent hydrophobic zippers inside duplex DNA: interstrand stacking of perylene-3,4:9,10-tetracarboxylic acid bisimides as artificial DNA base dyes.
Chemistry (Weinheim an der Bergstrasse, Germany) , 2008 | Pubmed ID: 18576414
BODIPY-modified uridines as potential fluorescent probes for nucleic acids that are recognized by DNA-polymerases.
Nucleic acids symposium series (2004) , 2008 | Pubmed ID: 18776397
Comparison of a nucleosidic vs non-nucleosidic postsynthetic "click" modification of DNA with base-labile fluorescent probes.
Bioconjugate chemistry Mar, 2009 | Pubmed ID: 19220008
Fluorescent color readout of DNA hybridization with thiazole orange as an artificial DNA base.
Angewandte Chemie (International ed. in English) , 2009 | Pubmed ID: 19229903
Helical arrangement of porphyrins along DNA: towards photoactive DNA-based nanoarchitectures.
Angewandte Chemie (International ed. in English) , 2009 | Pubmed ID: 19259998
DNA as a supramolecular framework for the helical arrangements of chromophores: towards photoactive DNA-based nanomaterials.
Chemical communications (Cambridge, England) May, 2009 | Pubmed ID: 19532903
White-light-emitting DNA (WED).
Chemistry (Weinheim an der Bergstrasse, Germany) Sep, 2009 | Pubmed ID: 19681079
Photoinduced short-range electron transfer in DNA with fluorescent DNA bases: lessons from ethidium and thiazole orange as charge donors.
Physical chemistry chemical physics : PCCP Jan, 2010 | Pubmed ID: 20024441
Red-white-blue emission switching molecular beacons: ratiometric multicolour DNA hybridization probes.
Organic & biomolecular chemistry Feb, 2010 | Pubmed ID: 20090965
Imaging of RNA delivery to cells by thiazole orange as a fluorescent RNA base substitution.
Organic & biomolecular chemistry Mar, 2010 | Pubmed ID: 20165788
Optical, redox, and DNA-binding properties of phenanthridinium chromophores: elucidating the role of the phenyl substituent for fluorescence enhancement of ethidium in the presence of DNA.
Chemistry (Weinheim an der Bergstrasse, Germany) Mar, 2010 | Pubmed ID: 20175158
In situ azide formation and "click" reaction of nile red with DNA as an alternative postsynthetic route.
Chemical communications (Cambridge, England) Apr, 2010 | Pubmed ID: 20234915
Synthesis of spiropyrans as building blocks for molecular switches and dyads.
The Journal of organic chemistry Apr, 2010 | Pubmed ID: 20334366
Synthetic incorporation of Nile Blue into DNA using 2'-deoxyriboside substitutes: Representative comparison of (R)- and (S)-aminopropanediol as an acyclic linker.
Beilstein journal of organic chemistry , 2010 | Pubmed ID: 20485595
New far-red and near-infrared fluorescent probes with large Stokes shifts for dual covalent labeling of DNA.
Chemistry, an Asian journal Aug, 2010 | Pubmed ID: 20589826
Non-covalent versus covalent control of self-assembly and chirality of Nile red-modified nucleoside and DNA.
Chemistry (Weinheim an der Bergstrasse, Germany) Aug, 2010 | Pubmed ID: 20645354
4,4-Difluoro-4-bora-3a,4a-diaza-s-indacene as a bright fluorescent label for DNA.
The Journal of organic chemistry Apr, 2011 | Pubmed ID: 21381720
Assembly of DNA triangles mediated by perylene bisimide caps.
Chemistry (Weinheim an der Bergstrasse, Germany) Jun, 2011 | Pubmed ID: 21538613
Ratiometric molecular beacons based on the perylene bisimide as a dimeric internal DNA base substitution.
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology Aug, 2011 | Pubmed ID: 21547330
In-stem-labeled molecular beacons for distinct fluorescent color readout.
Angewandte Chemie (International ed. in English) Aug, 2011 | Pubmed ID: 21717540
Polar solvation dynamics in water and methanol: search for molecularity.
Physical chemistry chemical physics : PCCP Oct, 2011 | Pubmed ID: 21887426
5-(Pyren-1-yl)uracil as a base-discriminating fluorescent nucleobase in pyrrolidinyl peptide nucleic acids.
Chemistry, an Asian journal Dec, 2011 | Pubmed ID: 21976408
Metal-mediated DNA assembly using the ethynyl linked terpyridine ligand.
Organic & biomolecular chemistry Jan, 2012 | Pubmed ID: 22089634
A "clickable" styryl dye for fluorescent DNA labeling by excitonic and energy transfer interactions.
Chemistry (Weinheim an der Bergstrasse, Germany) Jan, 2012 | Pubmed ID: 22223603
"DNA traffic lights": concept of wavelength-shifting DNA probes and application in an aptasensor.
Chembiochem : a European journal of chemical biology May, 2012 | Pubmed ID: 22532374
Photoinduced reductive electron transfer in LNA:DNA hybrids: a compromise between conformation and base stacking.
Angewandte Chemie (International ed. in English) Oct, 2012 | Pubmed ID: 22945791
Diarylethene-modified nucleotides for switching optical properties in DNA.
Beilstein journal of organic chemistry , 2012 | Pubmed ID: 23015841
Energy-transfer-based wavelength-shifting DNA probes with "clickable" cyanine dyes.
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology May, 2013 | Pubmed ID: 23314253
Synthesis of 4-aminophthalimide and 2,4-diaminopyrimidine C-nucleosides as isosteric fluorescent DNA base substitutes.
The Journal of organic chemistry Mar, 2013 | Pubmed ID: 23383743
RNA "traffic lights": an analytical tool to monitor siRNA integrity.
ACS chemical biology May, 2013 | Pubmed ID: 23402653
Synthesis of 2'-O-propargyl nucleoside triphosphates for enzymatic oligonucleotide preparation and "click" modification of DNA with Nile red as fluorescent probe.
Bioconjugate chemistry Mar, 2013 | Pubmed ID: 23425139
Synthesis and redox and photophysical properties of benzodifuran-spiropyran ensembles.
Chemistry (Weinheim an der Bergstrasse, Germany) May, 2013 | Pubmed ID: 23494841
Fluorescence quenching over short range in a donor-DNA-acceptor system.
Chemphyschem : a European journal of chemical physics and physical chemistry Apr, 2013 | Pubmed ID: 23532955
In-stem labelling allows visualization of DNA strand displacements by distinct fluorescent colour change.
Organic & biomolecular chemistry May, 2013 | Pubmed ID: 23558527
DNA and RNA "traffic lights": synthetic wavelength-shifting fluorescent probes based on nucleic acid base substitutes for molecular imaging.
The Journal of organic chemistry Aug, 2013 | Pubmed ID: 23796243
Development of a metal-ion-mediated base pair for electron transfer in DNA.
Chemistry (Weinheim an der Bergstrasse, Germany) Sep, 2013 | Pubmed ID: 23893654
Unraveling the pathways to UVA-induced DNA photodamage: (6-4) photoproduct as a potential "Trojan Horse".
Chemphyschem : a European journal of chemical physics and physical chemistry Oct, 2013 | Pubmed ID: 23897754
DNA-templated formation of fluorescent self-assembly of ethynyl pyrenes.
Chemical communications (Cambridge, England) Oct, 2013 | Pubmed ID: 23998185
Conformational control of benzophenone-sensitized charge transfer in dinucleotides.
Physical chemistry chemical physics : PCCP Nov, 2013 | Pubmed ID: 24084688
Synthesis and evaluation of cyanine-styryl dyes with enhanced photostability for fluorescent DNA staining.
Organic & biomolecular chemistry Nov, 2013 | Pubmed ID: 24088963
Conformational Control of Dual Emission by Pyrrolidinyl PNA-DNA Hybrids.
ChemistryOpen Aug, 2012 | Pubmed ID: 24551507
Photochemically Active Fluorophore-DNA/RNA Conjugates for Cellular Imaging of Nucleic Acids by Readout in Electron Microscopy.
ChemistryOpen Aug, 2013 | Pubmed ID: 24551554
Synthesis of DNA conjugates with metalated tetracationic porphyrins by postsynthetic cycloadditions.
Organic letters Mar, 2014 | Pubmed ID: 24606171
The base discriminating potential of pyrrolidinyl PNA demonstrated by magnetic Fe(x)O(y) particles.
Organic & biomolecular chemistry Jun, 2014 | Pubmed ID: 24777755
The role of duplex stability for wavelength-shifting fluorescent DNA probes: energy transfer vs. exciton interactions in DNA "traffic lights".
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology Aug, 2014 | Pubmed ID: 25000916
Bifunctional DNA architectonics: three-way junctions with sticky perylene bisimide caps and a central metal lock.
Chemistry (Weinheim an der Bergstrasse, Germany) Sep, 2014 | Pubmed ID: 25098549
2'-Deoxyuridine conjugated with a reactive monobenzocyclooctyne as a DNA building block for copper-free click-type postsynthetic modification of DNA.
Chemical communications (Cambridge, England) Oct, 2014 | Pubmed ID: 25112953
Synthesis and optical properties of pyrrolidinyl peptide nucleic acid carrying a clicked Nile red label.
Beilstein journal of organic chemistry , 2014 | Pubmed ID: 25246975
"Photoclick" postsynthetic modification of DNA.
Angewandte Chemie (International ed. in English) Dec, 2014 | Pubmed ID: 25359534
Mixed non-covalent assemblies of ethynyl nile red and ethynyl pyrene along oligonucleotide templates.
Organic & biomolecular chemistry Jan, 2015 | Pubmed ID: 25374296
Nucleic acid chemistry.
Beilstein journal of organic chemistry , 2014 | Pubmed ID: 25550760
Acceleration of Long-Range Photoinduced Electron Transfer through DNA by Hydroxyquinolines as Artificial Base Pairs.
Chemphyschem : a European journal of chemical physics and physical chemistry Jun, 2015 | Pubmed ID: 25784385
Mesityl phenanthroline-modified 2'-deoxyuridine for heteroleptic complexes in metal ion-mediated assembly of DNA.
Dalton transactions (Cambridge, England : 2003) Apr, 2015 | Pubmed ID: 25789449
Development of a wavelength-shifting fluorescent module for the adenosine aptamer using photostable cyanine dyes.
ChemistryOpen Apr, 2015 | Pubmed ID: 25969803
Copper-Free Postsynthetic Labeling of Nucleic Acids by Means of Bioorthogonal Reactions.
Chembiochem : a European journal of chemical biology Jul, 2015 | Pubmed ID: 26063100
DNA-Based Oligochromophores as Light-Harvesting Systems.
Chemistry (Weinheim an der Bergstrasse, Germany) Jun, 2015 | Pubmed ID: 26069203
Strand displacement and duplex invasion into double-stranded DNA by pyrrolidinyl peptide nucleic acids.
Organic & biomolecular chemistry Sep, 2015 | Pubmed ID: 26223770
One-Dimensional Multichromophor Arrays Based on DNA: From Self-Assembly to Light-Harvesting.
Accounts of chemical research Oct, 2015 | Pubmed ID: 26411920
Dynamic DNA architectures: spontaneous DNA strand exchange and self-sorting driven by perylene bisimide interactions.
Chemical communications (Cambridge, England) Nov, 2015 | Pubmed ID: 26419621
A DNA-Fullerene Conjugate as a Template for Supramolecular Chromophore Assemblies: Towards DNA-Based Solar Cells.
Angewandte Chemie (International ed. in English) Jan, 2016 | Pubmed ID: 26689149
Thiazole Orange Dimers in DNA: Fluorescent Base Substitutions with Hybridization Readout.
Chemistry (Weinheim an der Bergstrasse, Germany) Feb, 2016 | Pubmed ID: 26773846
Polarity Sensitive Bioorthogonally Applicable Far-Red Emitting Labels for Postsynthetic Nucleic Acid Labeling by Copper-Catalyzed and Copper-Free Cycloaddition.
Bioconjugate chemistry Feb, 2016 | Pubmed ID: 26786593
Two wavelength-shifting molecular beacons for simultaneous and selective imaging of vesicular miRNA-21 and miRNA-31 in living cancer cells.
Organic & biomolecular chemistry Jun, 2016 | Pubmed ID: 27114268
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