Department of Biochemistry
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Productive folding to the native state by a group II intron ribozyme.
Journal of molecular biology Jan, 2002 | Pubmed ID: 11786013
Concerted binding and bending of DNA by Escherichia coli integration host factor.
Journal of molecular biology Feb, 2002 | Pubmed ID: 11827473
Linkage of monovalent and divalent ion binding in the folding of the P4-P6 domain of the Tetrahymena ribozyme.
Biochemistry May, 2002 | Pubmed ID: 11980483
Solution structural studies of the Saccharomyces cerevisiae TATA binding protein (TBP).
Biochemistry Jul, 2002 | Pubmed ID: 12135378
Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme.
Nature structural biology Dec, 2002 | Pubmed ID: 12434149
Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical "footprinting".
Current opinion in structural biology Oct, 2002 | Pubmed ID: 12464318
Solution structure and interdomain interactions of the Saccharomyces cerevisiae "TATA binding protein" (TBP) probed by radiolytic protein footprinting.
Biochemistry Apr, 2003 | Pubmed ID: 12667055
Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme.
Journal of molecular biology Apr, 2003 | Pubmed ID: 12691754
An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme.
Journal of molecular biology Dec, 2003 | Pubmed ID: 14636593
Quaternary solution structures of galectins-1, -3, and -7.
Glycobiology Mar, 2004 | Pubmed ID: 14693909
Comparison of the effect of water release on the interaction of the Saccharomyces cerevisiae TATA binding protein (TBP) with "TATA Box" sequences composed of adenosine or inosine.
Biophysical journal Jan, 2004 | Pubmed ID: 14695279
Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions.
Nucleic acids research , 2004 | Pubmed ID: 15319447
Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme.
Journal of molecular biology Oct, 2004 | Pubmed ID: 15364572
Principles of RNA compaction: insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations.
Journal of molecular biology Nov, 2004 | Pubmed ID: 15491606
Catching RNA polymerase in the act of binding: intermediates in transcription illuminated by synchrotron footprinting.
Proceedings of the National Academy of Sciences of the United States of America Mar, 2005 | Pubmed ID: 15781859
Overproduction of alpha chains provides a proton-insensitive component to the bluefish hemoglobin system.
The Journal of biological chemistry Dec, 2005 | Pubmed ID: 16166086
Perturbation of the hierarchical folding of a large RNA by the destabilization of its Scaffold's tertiary structure.
Journal of molecular biology Nov, 2005 | Pubmed ID: 16242711
Concordant exploration of the kinetics of RNA folding from global and local perspectives.
Journal of molecular biology Jan, 2006 | Pubmed ID: 16303138
Indirect readout of DNA sequence by papillomavirus E2 proteins depends upon net cation uptake.
Journal of molecular biology Apr, 2006 | Pubmed ID: 16513133
Snf2/Swi2-related ATPase Mot1 drives displacement of TATA-binding protein by gripping DNA.
The EMBO journal Apr, 2006 | Pubmed ID: 16541100
Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule.
Journal of molecular biology May, 2006 | Pubmed ID: 16574145
Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins.
Nucleic acids research , 2006 | Pubmed ID: 16582097
Following the dynamics of changes in solvent accessibility of 16 S and 23 S rRNA during ribosomal subunit association using synchrotron-generated hydroxyl radicals.
Journal of molecular biology Jun, 2006 | Pubmed ID: 16725154
Influence of intramolecular cross-links on the molecular, structural and functional properties of PEGylated haemoglobin.
The Biochemical journal Feb, 2007 | Pubmed ID: 17049048
Binding then bending: a mechanism for wrapping DNA.
Proceedings of the National Academy of Sciences of the United States of America Dec, 2006 | Pubmed ID: 17159146
Influence of the N-terminal domain and divalent cations on self-association and DNA binding by the Saccharomyces cerevisiae TATA binding protein.
Biochemistry Apr, 2007 | Pubmed ID: 17378582
Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding.
Proceedings of the National Academy of Sciences of the United States of America Apr, 2007 | Pubmed ID: 17438287
DNA and protein footprinting analysis of the modulation of DNA binding by the N-terminal domain of the Saccharomyces cerevisiae TATA binding protein.
Biochemistry Sep, 2007 | Pubmed ID: 17683121
Following molecular transitions with single residue spatial and millisecond time resolution.
Methods in cell biology , 2008 | Pubmed ID: 17964944
Assembly and structural properties of glucocorticoid-induced TNF receptor ligand: Implications for function.
Proceedings of the National Academy of Sciences of the United States of America Dec, 2007 | Pubmed ID: 18040044
Evolution of GITRL immune function: murine GITRL exhibits unique structural and biochemical properties within the TNF superfamily.
Proceedings of the National Academy of Sciences of the United States of America Jan, 2008 | Pubmed ID: 18182486
Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting.
Nature protocols , 2008 | Pubmed ID: 18274531
Hinge stiffness is a barrier to RNA folding.
Journal of molecular biology Jun, 2008 | Pubmed ID: 18471829
High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.
Nucleic acids research Jun, 2008 | Pubmed ID: 18477638
Function and structural organization of Mot1 bound to a natural target promoter.
The Journal of biological chemistry Sep, 2008 | Pubmed ID: 18606810
Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments.
Nature protocols , 2008 | Pubmed ID: 18772866
Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs.
Current opinion in chemical biology Dec, 2008 | Pubmed ID: 18926923
Solution structure and refolding of the Mycobacterium tuberculosis pentapeptide repeat protein MfpA.
The Journal of biological chemistry Dec, 2008 | Pubmed ID: 18977756
PEGylation of Val-1(alpha) destabilizes the tetrameric structure of hemoglobin.
Biochemistry Jan, 2009 | Pubmed ID: 19119852
Evolutionary and biophysical relationships among the papillomavirus E2 proteins.
Frontiers in bioscience : a journal and virtual library , 2009 | Pubmed ID: 19273107
Complementing global measures of RNA folding with local reports of backbone solvent accessibility by time resolved hydroxyl radical footprinting.
Methods (San Diego, Calif.) Oct, 2009 | Pubmed ID: 19426806
Biochemical and structural characterization of the human TL1A ectodomain.
Biochemistry Aug, 2009 | Pubmed ID: 19522538
Conformational states of human purine nucleoside phosphorylase at rest, at work, and with transition state analogues.
Biochemistry Mar, 2010 | Pubmed ID: 20108972
Phenothiazines inhibit S100A4 function by inducing protein oligomerization.
Proceedings of the National Academy of Sciences of the United States of America May, 2010 | Pubmed ID: 20421509
Decoy strategies: the structure of TL1A:DcR3 complex.
Structure (London, England : 1993) Feb, 2011 | Pubmed ID: 21300286
Stability, denaturation and refolding of Mycobacterium tuberculosis MfpA, a DNA mimicking protein that confers antibiotic resistance.
Biophysical chemistry Nov, 2011 | Pubmed ID: 21605934
RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways.
RNA (New York, N.Y.) Aug, 2011 | Pubmed ID: 21712400
Introduction: twenty five years of the Gibbs Conference on Biothermodynamics.
Biophysical chemistry Nov, 2011 | Pubmed ID: 21840113
A microfluidic device that generates hydroxyl radicals to probe the solvent accessible surface of nucleic acids.
Lab on a chip Oct, 2011 | Pubmed ID: 21863183
Entropy-driven binding of picomolar transition state analogue inhibitors to human 5'-methylthioadenosine phosphorylase.
Biochemistry Nov, 2011 | Pubmed ID: 21985704
Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control.
Genes & development Jan, 2012 | Pubmed ID: 22215810
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