Department of Cell and Systems Biology
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Complete sequence and evolutionary genomic analysis of the Pseudomonas aeruginosa transposable bacteriophage D3112.
Journal of bacteriology Jan, 2004 | Pubmed ID: 14702309
Phylogenetic characterization of virulence and resistance phenotypes of Pseudomonas syringae.
Applied and environmental microbiology Sep, 2005 | Pubmed ID: 16151103
Diversifying selection drives the evolution of the type III secretion system pilus of Pseudomonas syringae.
Molecular biology and evolution Dec, 2006 | Pubmed ID: 16950758
Convergent evolution of phytopathogenic pseudomonads onto hazelnut.
Microbiology (Reading, England) Jul, 2007 | Pubmed ID: 17600051
Using a commercial DiversiLab semiautomated repetitive sequence-based PCR typing technique for identification of Escherichia coli clone ST131 producing CTX-M-15.
Journal of clinical microbiology Apr, 2009 | Pubmed ID: 19204095
Next-generation mapping of Arabidopsis genes.
The Plant journal : for cell and molecular biology Aug, 2011 | Pubmed ID: 21518053
Use of low-coverage, large-insert, short-read data for rapid and accurate generation of enhanced-quality draft Pseudomonas genome sequences.
PloS one , 2011 | Pubmed ID: 22073286
Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Pseudomonas syringae type III effector HopZ2.
BMC genomics Jan, 2012 | Pubmed ID: 22230763
A bacterial acetyltransferase destroys plant microtubule networks and blocks secretion.
PLoS pathogens Feb, 2012 | Pubmed ID: 22319451
Pulmonary bacterial communities in surgically resected noncystic fibrosis bronchiectasis lungs are similar to those in cystic fibrosis.
Pulmonary medicine , 2012 | Pubmed ID: 22448327
Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut.
BMC microbiology Jul, 2012 | Pubmed ID: 22800299
Analysis of the cystic fibrosis lung microbiota via serial Illumina sequencing of bacterial 16S rRNA hypervariable regions.
PloS one , 2012 | Pubmed ID: 23056217
Forward chemical genetic screens in Arabidopsis identify genes that influence sensitivity to the phytotoxic compound sulfamethoxazole.
BMC plant biology Nov, 2012 | Pubmed ID: 23176361
Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease.
PLoS pathogens , 2013 | Pubmed ID: 23935484
The Arabidopsis ZED1 pseudokinase is required for ZAR1-mediated immunity induced by the Pseudomonas syringae type III effector HopZ1a.
Proceedings of the National Academy of Sciences of the United States of America Nov, 2013 | Pubmed ID: 24170858
Lung microbiota across age and disease stage in cystic fibrosis.
Scientific reports May, 2015 | Pubmed ID: 25974282
Phenotypic diversity within a Pseudomonas aeruginosa population infecting an adult with cystic fibrosis.
Scientific reports Jun, 2015 | Pubmed ID: 26047320
Selective Sweeps and Parallel Pathoadaptation Drive Pseudomonas aeruginosa Evolution in the Cystic Fibrosis Lung.
mBio Sep, 2015 | Pubmed ID: 26330513
Global Analysis of the Fungal Microbiome in Cystic Fibrosis Patients Reveals Loss of Function of the Transcriptional Repressor Nrg1 as a Mechanism of Pathogen Adaptation.
PLoS pathogens Nov, 2015 | Pubmed ID: 26588216
Genomic screens identify a new phytobacterial microbe-associated molecular pattern and the cognate Arabidopsis receptor-like kinase that mediates its immune elicitation.
Genome biology May, 2016 | Pubmed ID: 27160854
Assembly and ecological function of the root microbiome across angiosperm plant species.
Proceedings of the National Academy of Sciences of the United States of America Feb, 2018 | Pubmed ID: 29358405
Epidemiology of Clonal Pseudomonas aeruginosa Infection in a Canadian Cystic Fibrosis Population.
Annals of the American Thoracic Society 07, 2018 | Pubmed ID: 29911888
Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies.
Microbiome 08, 2018 | Pubmed ID: 30121081
Methods and Strategies to Examine the Human Breastmilk Microbiome.
Methods in molecular biology (Clifton, N.J.) , 2018 | Pubmed ID: 30298248
A genome-wide association analysis reveals a potential role for recombination in the evolution of antimicrobial resistance in Burkholderia multivorans.
PLoS pathogens 12, 2018 | Pubmed ID: 30532201
Design and application of a novel two-amplicon approach for defining eukaryotic microbiota.
Microbiome 12, 2018 | Pubmed ID: 30572961
Identifying Type III Secreted Effector Function via a Yeast Genomic Screen.
G3 (Bethesda, Md.) 02, 2019 | Pubmed ID: 30573466
Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex.
Genome biology 01, 2019 | Pubmed ID: 30606234
Penicillin-binding protein 3 is a common adaptive target among Pseudomonas aeruginosa isolates from adult cystic fibrosis patients treated with β-lactams.
International journal of antimicrobial agents May, 2019 | Pubmed ID: 30664925
Microbiome networks and change-point analysis reveal key community changes associated with cystic fibrosis pulmonary exacerbations.
NPJ biofilms and microbiomes , 2019 | Pubmed ID: 30675371
Mycobiome Sequencing and Analysis Applied to Fungal Community Profiling of the Lower Respiratory Tract During Fungal Pathogenesis.
Frontiers in microbiology , 2019 | Pubmed ID: 30930884
Accumulation of genetic variants associated with immunity in the selective breeding of broilers.
BMC genetics 01, 2020 | Pubmed ID: 31952471
Pseudomonas aeruginosa strain sharing in early infection among children with cystic fibrosis.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America Jun, 2020 | Pubmed ID: 32544950
Examining the relationship between maternal body size, gestational glucose tolerance status, mode of delivery and ethnicity on human milk microbiota at three months post-partum.
BMC microbiology 07, 2020 | Pubmed ID: 32689933
Maternal Diet and Infant Feeding Practices Are Associated with Variation in the Human Milk Microbiota at 3 Months Postpartum in a Cohort of Women with High Rates of Gestational Glucose Intolerance.
The Journal of nutrition 02, 2021 | Pubmed ID: 32886107
Mothers of Preterm Infants Have Individualized Breast Milk Microbiota that Changes Temporally Based on Maternal Characteristics.
Cell host & microbe 11, 2020 | Pubmed ID: 32888417
Ecological Succession of Polymicrobial Communities in the Cystic Fibrosis Airways.
mSystems Dec, 2020 | Pubmed ID: 33262240
The Impact of Migration on the Gut Metagenome of South Asian Canadians.
Gut microbes Jan-Dec, 2021 | Pubmed ID: 33794735
Evaluation of digital dispense-assisted broth microdilution antimicrobial susceptibility testing for Pseudomonas aeruginosa isolates.
Scientific reports 04, 2021 | Pubmed ID: 33911107
Comparative genomic insights into the epidemiology and virulence of plant pathogenic pseudomonads from Turkey.
Microbial genomics Jul, 2021 | Pubmed ID: 34227931
Oligosaccharides and Microbiota in Human Milk Are Interrelated at 3 Months Postpartum in a Cohort of Women with a High Prevalence of Gestational Impaired Glucose Tolerance.
The Journal of nutrition Sep, 2021 | Pubmed ID: 34510198
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