rapid-efficient-zebrafish-genotyping-using-pcr-with-high-resolution

Rapid and Efficient Zebrafish Genotyping Using PCR with High-resolution Melt Analysis

Zebrafish is a powerful vertebrate model system for studying development, modeling disease, and performing drug screening. Recently a variety of genetic ...

University of Utah School of Medicine

foxP2, a forkhead-domain transcription factor, is critical for speech and language development in humans, but its role in the establishment of CNS connectivity is unclear. While in vitro studies have identified axon guidance molecules as targets of foxP2 regulation, and cell culture assays suggest a role for foxP2 in neurite outgrowth, in vivo studies have been lacking regarding a role for foxP2 in axon pathfinding. We used a modified zinc finger nuclease methodology to generate mutations in the zebrafish foxP2 gene. Using PCR-based high resolution melt curve analysis (HRMA) of G0 founder animals, we screened and identified three mutants carrying nonsense mutations in the 2(nd) coding exon: a 17 base-pair (bp) deletion, an 8bp deletion, and a 4bp insertion. Sequence analysis of cDNA confirmed that these were frameshift mutations with predicted early protein truncations. Homozygous mutant fish were viable and fertile, with unchanged body morphology, and no apparent differences in CNS apoptosis, proliferation, or patterning at embryonic stages. There was a reduction in expression of the known foxP2 target gene cntnap2 that was rescued by injection of wild-type foxP2 transcript. When we examined axon pathfinding using a pan-axonal marker or transgenic lines, including a foxP2-neuron-specific enhancer, we did not observe any axon guidance errors. Our findings suggest that foxP2 is not necessary for axon pathfinding during development.

Lingyan Xing

Division of Pediatric Neurology,
Department of Pediatrics,
Department of Neurobiology and Anatomy,
Interdepartmental Program in Neurosciences,
Division of Pediatric Neurology, Department of Pediatrics

University of Utah School of Medicine

Rapid and Efficient Zebrafish Genotyping Using PCR with High-resolution Melt Analysis

Lingyan Xing

.css-o250i3{font-size:18px;font-family:Open Sans,sans-serif;line-height:21.6px;}Division of Pediatric Neurology,Department of Pediatrics,Department of Neurobiology and Anatomy,Interdepartmental Program in Neurosciences,Division of Pediatric Neurology, Department of Pediatrics

University of Utah School of Medicine

Rapid and Efficient Zebrafish Genotyping Using PCR with High-resolution Melt Analysis

Division of Pediatric Neurology,
Department of Pediatrics,
Department of Neurobiology and Anatomy,
Interdepartmental Program in Neurosciences,
Division of Pediatric Neurology, Department of Pediatrics