Name: laser capture microdissection to isolate purkinje cells from a human post-mortem cerebellum tissue
Uploaded: 2025-03-31T15:00:42.000+00:00
Duration: 1 min 18 s
Description: Source: Martuscello, R. T., L. et al., A Stainless Protocol for High Quality RNA Isolation from Laser Capture Microdissected Purkinje Cells in the Human ...

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All procedures involving sample collection have been performed in accordance with the institute&#39;s IRB guidelines.
1. Sectioning Tissue
<ol>
	<li>Cut a small piece of the tissue (~1 cm x 1 cm) for sectioning. Return the remaining tissue to dry ice/-80 &#176;C freezer. 
	NOTE: Ensure that the tissue section is ~95% cerebellar cortex, where Purkinje cells are located.</li>
	<li>Place an approximately 3 mm high mound of OCT to cover the &#39;chuck&#39;. Start by building the layers on top in a slow, circular motion until there is a small mound.</li>
	<li>Once the OCT is partially frozen but still has some liquid in the center, place the tissue on top of it. Do not push the tissue deeply into the OCT. Allow the tissue to sit on top of it until completely frozen, which will take 1&#8211;2 minutes.</li>
	<li>Place the &#39;chuck&#39; with frozen OCT and the tissue into the cryostat cutting arm. Adjust the tissue so it is flush with the cutting blade.</li>
	<li>Allow the tissue to sit in the cutting arm for 15&#8211;20 min to adjust to the new temperature. 
	NOTE: Depending on the thickness of the tissue, time is needed for temperature acclimation. Allow the tissue to sit as long as required to cut cleanly. Adjust OT and CT to assist with tissue temperature acclimation.</li>
	<li>Slowly move the tissue closer to the blade. Once the tissue has reached the blade, start the trim process. Trim thickness should be set to 30 &#956;m.</li>
	<li>Trim 2&#8211;3x until the cortex layers are visible.</li>
	<li>Place and align the anti-roll plate just above the cryostat blade. 
	NOTE: A silver line will appear from the light in the cryostat at the interface of the blade and anti-roll plate. This indicates the anti-roll plate is directly over the edge of the blade.</li>
	<li>Begin to cut the sections at 14 &#956;m. Properly cut sections will be flat under the anti-roll plate. 
	NOTE: If the tissue is stuck, ensure that the anti-roll plate is cold enough. If necessary, placing a piece of dry ice on the outside (side not touching the stage) will rapidly chill the anti-roll plate.</li>
	<li>Cut 4&#8211;6 sections and align them horizontally across the cryostat stage.</li>
	<li>Angling the slide, pick up all the pieces of the tissue at one time. 
	NOTE: Using the brushes, lift up the ends of the tissue to make them more readily available for the slide upon pick up. Do not pick up one section at a time. Exposure to room-temperature air will degrade RNA integrity. 
	CAUTION: Do not let the membrane touch the stage of the cryostat. If the membrane touches the stage, it will begin to detach from the glass slide and will cause errors when attempting LCM.</li>
	<li>Immediately move to Step 6. Do not delay fixation.</li>
</ol>
2. Fixing Tissue/Stain-less Visualization
<ol>
	<li>Immediately move to the ethanol fixation protocol</li>
	<li>Place the slide in the slide holder with 70% ethanol for 2 min &#8212; on ice.</li>
	<li>Place the slide in the slide holder with 95% ethanol for 45 s &#8212; on ice.</li>
	<li>Place the slide in the slide holder with 100% ethanol for 2 min &#8212; at RT.</li>
	<li>Dip the slide 3 times in the slide holder with xylene 1 &#8212; at RT.</li>
	<li>Place the slide in the slide holder with xylene 2 for 5 min &#8212; at RT.</li>
	<li>Allow to dry in a clean area for at least 30 minutes. Longer dry times, up to 60 minutes, are optimal. 
	CAUTION: Use stand-up slides for drying in a fume hood. Xylene is volatile. Laying slides flat will cause xylene to pool in the tissue section, making the tissue too dark.</li>
</ol>
3. Thawing Stored Slides for Use
<ol>
	<li>Remove the tube with a single slide from the -80 &#176;C freezer 1 h before intended use.</li>
	<li>Do not immediately open the tube. Allow the tube to come to room temperature. Condensation will occur on the outside of the tube only.</li>
	<li>Once the tube has reached room temperature and all condensation is gone (approximately 30&#8211;40 min), remove the cap and expose the slide to room-temperature air.</li>
	<li>Allow the slide to acclimate to room temperature for 15&#8211;20 minutes. Then, leave it inside the tube with the cap removed. 
	NOTE: The slide is now ready for LCM.</li>
</ol>
4. Laser Capture Microdissection of Purkinje Cells:
NOTE: This protocol section will only discuss specifics related to capturing Purkinje cells for subsequent RNA sequencing. This section assumes that the user is familiar with the UV laser capture microscope and the affiliated software.
<ol>
	<li>Clean the microscope stage and the cap collection arm with the RNase decontaminator.</li>
	<li>With gloved hands, place the slide on the microscope and 500 &#956;L opaque cap in the collection arm. 
	NOTE: Always ensure proper RNA technique by cleaning the work area with an RNase decontaminator and using gloved hands while touching the slide or opaque cap. Gloves can be removed once the slide and cap are in place and laser capture has commenced.</li>
	<li>At low magnification, align the opaque cap over the cerebellar tissue, ensuring that the cap covers the entire area visualized in the eyepiece. 
	NOTE: Only the microscope&#39;s eyepiece will show if the opaque cap is centered. The camera will not show if the cap is centered over the tissue. Depending on the laser capture scope design, the visualization through the opaque cap will either be in the eyepiece only or visualized in both the eyepiece and camera.</li>
	<li>Visualize the cerebellar layers with 5x - 10x objective lens and place the cursor over the section where molecular layer and granule cell layer intersect (the Purkinje cell layer).</li>
	<li>Move to 40X and visualize Purkinje cells. 
	NOTE: See Figure 1 and Figure 2 for example visualizations.</li>
	<li>Begin capturing Purkinje cells. 
	NOTE: At least 5 ng of RNA is required to perform RNA sequencing. Approximately 1600&#8211;2000 Purkinje cells yield enough RNA material for sequencing. RNA will be stable for up to 8 hours at the microscope. Test UV energy and UV focus before collection to ensure levels are correct. Over time, the tissue will continue to dry out, and the UV energy and UV focus may need to be changed.</li>
</ol>

<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>MembraneSlide NF 1.0 PEN</td>
			<td>Zeiss</td>
			<td>415190-9081-000</td>
			<td>Membrane slides for tissue. We do not recommend using glass slides.</td>
		</tr>
		<tr>
			<td>AdhesiveCap 500 Opaque</td>
			<td>Zeiss</td>
			<td>415190-9201-000</td>
			<td>Opaque caps are used to enhance visualization on inverted scopes only</td>
		</tr>
		<tr>
			<td>RNase Away</td>
			<td>Molecular BioProducts</td>
			<td>7005-11</td>
			<td>Other RNase decontamination products are also suitable. Use to clean all surfaces prior to work.</td>
		</tr>
		<tr>
			<td>200 Proof Ethanol</td>
			<td>Decon Laboratories</td>
			<td>2701</td>
			<td>If using alternative Ethanol, ensure high quality. Essential for tissue fixation.</td>
		</tr>
		<tr>
			<td>Xylenes (Certified ACS)</td>
			<td>Fisher Scientific</td>
			<td>X5P-1GAL</td>
			<td>If using alternative xylene, ensure high quality. Essential for tissue visualization.</td>
		</tr>
		<tr>
			<td>UltraPure Distilled Water</td>
			<td>Invitrogen</td>
			<td>10977-015</td>
			<td>Other RNA/DNA/Nuclease free water also suitable. Utilized in ethanol dilution only.</td>
		</tr>
		<tr>
			<td>Slide-Fix Slide Jars</td>
			<td>Evergreen</td>
			<td>240-5440-G8K</td>
			<td>Any slide holder/jar is also suitable. Must be cleaned prior to use. Used for fixation following sectioning.</td>
		</tr>
		<tr>
			<td>Anti-Roll Plate, Assy. 70mm 100um</td>
			<td>Leica Biosystems</td>
			<td>14041933980</td>
			<td>Anti-roll plate type is determined by type of cryostat and attachment location on stage. All cryostats have differing requirements.</td>
		</tr>
		<tr>
			<td>Kimwipes</td>
			<td>Fisher Scientific</td>
			<td>06-666A</td>
			<td>Kimwipes can be ordered from any vendor and used at any size. Kimwipes are to be used to clean microscope and cryostat.</td>
		</tr>
		<tr>
			<td>Tissue-Plus O.C.T. Compound</td>
			<td>Fisher Scientific</td>
			<td>23-730-571</td>
			<td>Any brand of OCT is acceptable. No tissue will be embedded in the OCT, it is strickly to attach tissue to &#39;chuck&#39;.</td>
		</tr>
		<tr>
			<td>Edge-Rite Low-Profile Microtome Blades</td>
			<td>Thermo Scientific</td>
			<td>4280L</td>
			<td>Blade type is determined by type of cryostat. All cryostats have differing requirements.</td>
		</tr>
		<tr>
			<td>Leica Microsystems 3P 25 + 30MM CRYOSTAT CHUCKS</td>
			<td>Fisher Scientific</td>
			<td>NC0558768</td>
			<td>Chuck type is determined by type of cryostat. All cryostats have different requirements. Either size is suitable.</td>
		</tr>
	</tbody>
</table>

laser capture microdissection to isolate purkinje cells from a human post-mortem cerebellum tissue

Source: Martuscello, R. T., L. et al., <a href="https://app.jove.com/v/58953">A Stainless Protocol for High Quality RNA Isolation from Laser Capture Microdissected Purkinje Cells in the Human Post-Mortem Cerebellum.</a> J. Vis. Exp. (2019)
This video demonstrates how to isolate Purkinje cells from a human post-mortem cerebellar tissue using laser capture microdissection.

<img alt="Figure 1" src="/files/ftp_upload/23216/23216_Figure1.jpg" /> 
Figure 1: Cerebellar layers and Purkinje Cell visualization with and without xylene treatment. Representative images with and without xylene following ethanol fixation and dehydration. The molecular layer (ML) and granule cell layer (GCL) are labeled. Purkinje cells are marked with arrows. (A) 5X representation of cerebellar layer visualization without xylene. Scale bar: 10 &#181;m. (B) 5X repres...

Laser Capture Microdissection to Isolate Purkinje Cells from a Human Post-Mortem Cerebellum Tissue

Source: Martuscello, R. T., L. et al., A Stainless Protocol for High Quality RNA Isolation from Laser Capture Microdissected Purkinje Cells in the Human ...

Take a human postmortem cerebellar tissue containing the Purkinje cell, granule, and molecular cell layers.
Place it on a cryostat sample holder containing partially frozen embedding media.
Allow the media to freeze completely, securing the tissue.
Transfer this assembly into the cryostat cutting arm and allow the tissue to acclimatize to the cryostat temperature.
Move the tissue closer to the blade and trim it to expose the cortex layers.
Place an anti-roll plate above the blade and obtain cerebellar sections.
Transfer these sections to a membrane slide.
Incubate in increasing ethanol concentrations for tissue fixation and dehydration.
Then, incubate in xylene.
Dry the slide and place it on a UV laser capture microscope stage.
&#160;Position the collection cap over the cerebellar tissue.
Microscopically, focus on the Purkinje cells.
Using the laser, capture and collect the Purkinje cells for further analysis.

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24 Views. Source: Martuscello, R. T., L. et al., A Stainless Protocol for High Quality RNA Isolation from Laser Capture Microdissected Purkinje Cells in the Human Post-Mortem Cerebellum. J. Vis. Exp. (2019) This video demonstrates how to isolate Purkinje cells from a human post-mortem cerebellar tissue using laser capture microdissection. 

Video: Laser Capture Microdissection to Isolate Purkinje Cells from a Human Post-Mortem Cerebellum Tissue - Concept

Laser-capture Microdissection of Human Prostatic Epithelium for RNA Analysis

The prostate gland contains a heterogeneous milieu of stromal, epithelial, neuroendocrine and immune cell types. Healthy prostate is comprised of fibromuscular stroma surrounding discrete epithelial-lined secretory lumens and a very small population of immune and neuroendocrine cells. In contrast, areas of prostate cancer have increased dysplastic luminal epithelium with greatly reduced or absent stromal population. Given the profound difference between stromal and epithelial cell types, it is imperative to separate the cell types for any type of downstream molecular analysis. Despite this knowledge, the bulk of gene expression studies compare benign prostate to cancer without micro-dissection, leading to stromal bias in the benign samples. Laser-capture micro-dissection (LCM) is an effective method to physically separate different cell types from a specimen section. The goal of this protocol is to show that RNA can be successfully isolated from LCM-collected human prostatic epithelium and used for downstream gene expression studies such as RT-qPCR and RNAseq.

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The prostate gland contains a heterogeneous milieu of stromal, epithelial, neuroendocrine and immune cell types.  Healthy prostate is comprised of ...

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RNA Isolation from Cell Specific Subpopulations Using Laser-capture Microdissection Combined with Rapid Immunolabeling

Laser capture microdissection (LCM) allows the isolation of specific cells from thin tissue sections with high spatial resolution. Effective LCM requires precise identification of cells subpopulations from a heterogeneous tissue. Identification of cells of interest for LCM is usually based on morphological criteria or on fluorescent protein reporters. The combination of LCM and rapid immunolabeling offers an alternative and efficient means to visualize specific cell types and to isolate them from surrounding tissue. High-quality RNA can then be extracted from a pure cell population and further processed for downstream applications, including RNA-sequencing, microarray or qRT-PCR. This approach has been previously performed and briefly described in few publications. The goal of this article is to illustrate how to perform rapid immunolabeling of a cell population while keeping RNA integrity, and how to isolate these specific cells using LCM. Herein, we illustrated this multi-step procedure by immunolabeling and capturing dopaminergic cells in brain tissue from one-day-old mice. We highlight key critical steps that deserve special consideration. This protocol can be adapted to a variety of tissues and cells of interest. Researchers from different fields will likely benefit from the demonstration of this approach.

Gene expression analysis of a subset of cells in a specific tissue represents a major challenge. This article describes how to isolate high-quality total RNA from a specific cell population by combining a rapid immunolabeling method with laser capture microdissection.

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Laser Capture Microdissection of Highly Pure Trabecular Meshwork from Mouse Eyes for Gene Expression Analysis

Laser capture microdissection (LCM) has allowed gene expression analysis of single cells and enriched cell populations in tissue sections. LCM is a great tool for the study of the molecular mechanisms underlying cell differentiation and the development and progression of various diseases, including glaucoma. Glaucoma, which comprises a family of progressive optic neuropathies, is the most common cause of irreversible blindness worldwide. Structural changes and damage within the trabecular meshwork (TM) can result in increased intraocular pressure (IOP), which is a major risk factor for developing glaucoma. However, the precise molecular mechanisms involved are still poorly understood. The ability to perform gene expression analysis will be crucial in obtaining further insights into the function of these cells and its role in the regulation of IOP and glaucoma development. To achieve this, a reproducible method for isolating highly enriched TM from frozen sections of mouse eyes and a method for downstream gene expression analysis, such as RT-qPCR and RNA-Seq is needed. The method described herein is developed to isolate highly pure TM from mouse eyes for downstream digital PCR and microarray analysis. In addition, this technique can be easily adapted for the isolation of other highly enriched ocular cells and cell compartments that have been difficult to isolate from mouse eyes. The combination of LCM and RNA analysis can contribute to a more comprehensive understanding of the cellular events underlying glaucoma.

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Laser capture microdissection (LCM) has allowed gene expression analysis of single cells and enriched cell populations in tissue sections. LCM is a great ...

Laser Capture Microdissection to Isolate Purkinje Cells from a Human Post-Mortem Cerebellum Tissue

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Laser Capture Microdissection to Isolate Purkinje Cells from a Human Post-Mortem Cerebellum Tissue

Laser-capture Microdissection of Human Prostatic Epithelium for RNA Analysis

RNA Isolation from Cell Specific Subpopulations Using Laser-capture Microdissection Combined with Rapid Immunolabeling

Laser Capture Microdissection of Highly Pure Trabecular Meshwork from Mouse Eyes for Gene Expression Analysis