We are grateful for funding from the British Heart Foundation to TK and to the UK Medical Research Council for a postgraduate research studentship to GB.

All components of this study were carried out in accordance with the UK Animals (Scientific Procedures) Act, 1986, and with the approval of the University of Cambridge Ethical Review Panel.
1. Animal Preparation
<ol>
	<li>Induce infarcts with a surgical intervention7,8. For measuring at the acute stage, perform imaging 24 hr after intervention.</li>
	<li>Prepare a thin syringe tubing for drug delivery with a 25 G needle at one extremity and a syringe with a 25 G needle at the other end. The length of the line should be enough to allow the injection from outside the magnet&#8217;s bore (approximately&#160;1.5 m).</li>
	<li>Prepare a solution diluting Gadovist in saline. Load a syringe with the right amount of solution to achieve 3 mmol/kg adjusted for mouse bodyweight. Keep the injection volume between 50-100 &#181;l.</li>
	<li>Prefill the line with the Gadovist solution. To avoid blood clotting, fill the extremity of the line close to the cannula with heparin saline.</li>
	<li>Place the mouse in the induction box for anesthesia with 3% isoflurane in O2&#160;1 L/min for 3-5 min as necessary. Correct anesthesia depth can be identified with the slowing breath rate, which should decrease to less than 70 bpm.</li>
	<li>Cannulate the tail vein using the line previously prepared, use surgical tape to keep the needle in place during the procedure.</li>
</ol>
2. Animal Positioning and Monitoring
<ol>
	<li>Place the mouse on the MRI bed, delivering 1-2% isoflurane in 1 L/min O2 for anesthesia maintenance as required. Maintain respiration rates between 20-70 bpm.</li>
	<li>Ensure the center of the MRI coil is located over the mouse heart position.</li>
	<li>Monitor respiration by placing a respiratory pillow sensor slightly below the diaphragm. Use a rectal thermometer with a prelubricated cover slip to monitor core temperature. Ensure that temperature is kept constant during the scans at 37&#177;2 &#176;C.</li>
	<li>For ECG monitoring, place three electrodes on the anterior paws and on the left rear paw, making sure that the palm of the toe is completely open. Choose the pair of electrodes achieving the best signal quality to derive the ECG. Twist the ECG cables together, to insure that they do not form resonant circuits at the MRI resonant frequency, which would severely corrupt the ECG signal when running pulse sequences.</li>
	<li>Ensure the electrodes are firmly attached to the bed using tape. The electrodes and the nose cone will hold the animal in place during the whole procedure.</li>
	<li>Position a water-heated blanket over the mouse, encapsulating the monitoring and coil leads to maintain body temperature.</li>
	<li>Align the laser of the bed with the heart position; use the anterior toes line as a landmark. Position this in the magnet isocenter using an automatic bed.</li>
	<li>Run the standard adjustments for the MRI system.</li>
	<li>Set the monitoring equipment to detect the R-wave in the ECG. Adjust the thresholds for each mouse and within imaging sessions so that there is reliable triggering.</li>
</ol>
3. MRI
<ol>
	<li>Acquire a pilot image to plan the multiplanar pilot images.</li>
	<li>Identify the heart in the image, most easily by its flow artifacts. If the images show the mouse is not well centered in the coil or the isocenter, retract the bed and repeat positioning.</li>
	<li>Acquire a fast gradient echo (GE) image with five slices per orientation and a 3 cm field of view (FOV)&#160;with ECG gating turned on.</li>
	<li>Run an ungated 3D scan centered on the heart for PET coregistration (see Table 1 for scan parameters). While this scan is running, plan the successive scans.</li>
	<li>Plan a four chamber (4 ch) view scan (see Table 1 for scan parameters). This should cut through the apex and the tricuspid and mitral valves, showing all 4 chambers.</li>
	<li>Plan a two chamber (2 ch) view (see Table 1 for scan parameters). It should cut through the apex and the tricuspid valve, showing the left atrium and ventricle.</li>
	<li>Crosscheck the geometry of the two long-axis views. If the slice planning is sub-optimal, repeat the scan.</li>
	<li>Plan a stack of short axis slices (see Table 1 for scan parameters) orthogonal to both the 4 ch and to the 2 ch view. Cover the whole heart, starting from the first apical slice without blood pool until the first basal slice without any RV. Slices should be equally spaced with no gaps.</li>
</ol>
4. Late Gadolinium Enhancement
<ol>
	<li>Increase blank time for gating to acquire every other heart beat (TR = 550-750 msec). A delay must be applied such that acquisition is performed at the end-diastolic phase of the ECG.</li>
	<li>Perform a low-resolution version of the LGE sequence (see Table 1 for scan parameters) before the injection in order to check that the gating is correct and no flow artifacts are present. If flow artifacts are present in the diastolic phase, increasing the delay slightly (i.e. imaging at the very early stage of systole) will get rid of them.</li>
	<li>Perform the injection of the Gadovist solution slowly and steadily over 15 sec.</li>
	<li>Initiate LGE imaging (see Table 1 for scan parameters) after the injection. Good contrast is achieved when imaging within the first 15 min.</li>
</ol>
5. PET Imaging
<ol>
	<li>Transfer the MRI bed to the PET scanner leaving the receiver in place and firmly anchor it to the PET bed support. Connect the anesthetic and monitoring equipment.</li>
	<li>Position the heart in the center of the PET field of view moving the bed only axially.</li>
	<li>Acquire a single-pass transmission scan with a germanium source.</li>
	<li>Extract 10-30 Mbq of radioactively labeled FDG from its container with a syringe. Take necessary care with radioactive material. Measure the activity with a well counter. A good injection volume for mice ranges between 50-100 &#181;l, if the volume is too small, dilute the solution with saline.</li>
	<li>Start the emission scan, set to acquire list-mode gated PET for 45 min. Contemporaneously, inject the tracer slowly and steadily over 15 sec. Flush the line with enough saline to deliver the whole of the radioactive tracer.</li>
	<li>For animal health, do not to exceed 300 &#181;l with the three injections (i.e. Gadovist, FDG, flush).</li>
	<li>Place the syringe back in the well counter to measure the residual activity.</li>
	<li>Follow local rules throughout for handling radioactive material.</li>
</ol>
6. MRI Segmentation
<ol>
	<li>Load the Cine-MRI images in Segment v1.9&#160;9.</li>
	<li>Run the automatic tools for segmentation. Starting from a point inside the ventricle, these will inflate the estimated ventricle walls until the best match is found.</li>
	<li>Delineate the LV and the RV manually at end systole (ES) and end diastole (ED), defined respectively as the frames with the maximal and with the minimal global LV volume. Exclude the papillary muscles and trabeculations throughout. Do not adjust image contrast, as inconsistency in the contrast leads to a different interpretation of partial volume effects.</li>
	<li>Delineate manually the epicardium at ES and ED for LV mass calculations, as shown in Figure 6. The cardiac muscle is incompressible, so the LV mass must be consistent in ES and ED. If the difference is more than 5% operator error is likely and these should be reviewed.</li>
	<li>At the base of the ventricles, use a straight line to discriminate ventricles from atria as shown in Figure 6, identifying the angle of the slice with the help of the long-axis views.</li>
	<li>Cross-check the segmentation on the long-axis views.</li>
	<li>Delineate the scar area on the LGE images. Divide the scar volume by the LV mass derived in the cine imaging to obtain the infarct as a percentage of the LV.</li>
</ol>
7. PET Analysis and Coregistration with MRI
<ol>
	<li>Reconstruct the PET images using a 3D filtered backprojection algorithm and export data to Nifti format (http://nifti.nimh.nih.gov/) showing standard uptake values.</li>
	<li>Transform all the PET images using the fixed transformation matrix between the PET and the MRI system. If the matrix is not known, fill a geometrical phantom with radioactive material and perform an MRI, then move the bed to the PET and perform an emission scan. The matrix obtained to transform the PET to the MRI image is the standard matrix to go from the PET to the MRI system.</li>
	<li>Register the average PET image to the 3D MRI using SPM-mouse bulk coregistration tool10.</li>
	<li>Stack the slices from Cine-MRI to obtain a 3D reconstruction, interpolate to obtain 0.3 mm isotropic resolution. Register the end-diastolic PET volume to the end-diastolic MRI volume using SPM-Mouse coregistration tools. Use the same matrix for all the other heart phases.</li>
	<li>To evaluate PET infarct size, choose 50% of the maximum intensity in the heart to discriminate between infarcted and noninfarcted voxels. Express infarcted voxels as a percentage of the LV.</li>
</ol>

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S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+isolated+working+mouse+heart:+methodological+considerations.">The isolated working mouse heart: methodological considerations.</a> Pfl&#252;gers Arch. 437, 979-985 (1999).</li><li>Epstein, F. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=MR+in+mouse+models+of+cardiac+disease.">MR in mouse models of cardiac disease.</a> NMR Biomed. 20, 238-255 (2007).</li><li>Schneider, J. E., Wiesmann, F., Lygate, C. 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There is nothing to disclose.

PET/MRI is a comprehensive measurement method for the noninvasive and longitudinal evaluation of systolic function, tissue viability and specific metabolic markers in mouse models of myocardial infarction. Here we have described a protocol for performing MRI and PET sequentially, where coregistration is simplified by the transfer of the same bed between systems. This strategy, also adopted by manufacturers of clinical systems11, does not require a combined PET/MRI scanner and can be performed with standard equ...

In order to measure the efficacy of new treatment strategies for myocardial infarction (MI) in preclinical studies, the assessment of the acute stage as well as long-term outcome is required1. Methods such as histopathology, intracardiac catheters2, and ex vivo heart models3 are commonly used for preclinical studies in mice. It is impossible, however, to follow up treatment with ex vivo&#160;or highly invasive methods. Noninvasive measurement techniques as in vivo&#160;magnetic resonance imaging (MRI) and positron emission tomography (PET) allow longitudinal experimental designs for disease staging in single subjects. Cine-MRI is used to derive global functional parameters such as left ventricular mass (LVM), ejection fraction (EF) and cardiac output (CO). In addition, after the injection of a gadolinium contrast agent, due to impaired perfusion and washout in the infarction, tissue viability can be assessed with late gadolinium enhancement (LGE) MRI. Complementarily, PET offers a sensitive measure of radiolabeled molecules in order to assess tissue metabolism. The high accuracy of these techniques permits significant reductions in the number of animals required for testing new drugs targeting MI.
The PET and MRI procedures are involved, and without a carefully designed protocol reproducibility is hard to maintain. Procedures established in the clinic for patients require substantial modification for use in mice, due to their considerably faster heart rate and smaller dimensions of the heart4. There is wide variation between individual subjects, both at baseline and in response to induced injury, so a considerable number of mice are needed to establish treatment efficacy.
In this report, we describe our method for sequential PET/MRI imaging of the mouse heart. Both modalities use intravenous contrast agents, which are delivered through the tail vein. MRI consists of standard assessment with Cine-MRI5&#160;with an optimal protocol for LGE as described in our previous work6. The entire MRI procedure lasts 30 min. We have obtained consistent fittings for the beds of our instruments so it is possible to transfer the animal on a platform with the same monitoring and anesthetic delivery apparatus between the machines. The PET scan lasts 45 min with in situ injection once the scan is started. The final step is to measure the parameters from both MRI and PET images following coregistration.

<table border="0" cellpadding="0" cellspacing="0" width="516">
	<colgroup>
		<col />
		<col />
		<col />
		<col />
	</colgroup>
	<tbody>
		<tr height="34">
			<td height="34" style="height:34px;width:111px;">Material name</td>
			<td style="width:91px;">Company</td>
			<td style="width:136px;">Catalogue number</td>
			<td style="width:179px;">Comments</td>
		</tr>
		<tr height="69">
			<td height="69" style="height:69px;width:111px;">Gadovist</td>
			<td style="width:91px;">Bayer Schering Pharma</td>
			<td style="width:136px;">PL 00010/0535</td>
			<td style="width:179px;"></td>
		</tr>
		<tr height="63">
			<td height="63" style="height:63px;width:111px;">FDG</td>
			<td style="width:91px;">IBA Molecular</td>
			<td style="width:136px;"></td>
			<td style="width:179px;"></td>
		</tr>
		<tr height="20">
			<td height="20" style="height:20px;"></td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr height="20">
			<td height="20" style="height:20px;"></td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Equipment</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr height="43">
			<td height="43" style="height:43px;width:111px;">Material name</td>
			<td style="width:91px;">Company</td>
			<td style="width:136px;">Catalog number</td>
			<td style="width:179px;">Comments</td>
		</tr>
		<tr height="64">
			<td height="64" style="height:64px;width:111px;">Bruker BioSpec 47/40</td>
			<td style="width:91px;">Bruker</td>
			<td style="width:136px;"></td>
			<td style="width:179px;"></td>
		</tr>
		<tr height="67">
			<td height="67" style="height:67px;width:111px;">Bruker mouse bed</td>
			<td style="width:91px;">Bruker</td>
			<td style="width:136px;"></td>
			<td style="width:179px;">This bed includes tubing for anesthesia delivery and scavenging.</td>
		</tr>
		<tr height="64">
			<td height="64" style="height:64px;width:111px;">12 cm diameter birdcage transmitter</td>
			<td style="width:91px;">Bruker</td>
			<td style="width:136px;">T5346</td>
			<td style="width:179px;"></td>
		</tr>
		<tr height="74">
			<td height="74" style="height:74px;width:111px;">2 cm diameter surface coil receiver</td>
			<td style="width:91px;">Bruker</td>
			<td style="width:136px;">T7027</td>
			<td style="width:179px;"></td>
		</tr>
		<tr height="103">
			<td height="103" style="height:103px;width:111px;">Red Dot Neonatal monitoring electrodes</td>
			<td style="width:91px;">3M</td>
			<td style="width:136px;">P/N: 2330</td>
			<td style="width:179px;"></td>
		</tr>
		<tr height="98">
			<td height="98" style="height:98px;width:111px;">Monitoring equipment</td>
			<td style="width:91px;">SA Systems</td>
			<td style="width:136px;"></td>
			<td style="width:179px;">The monitoring kit includes respiratory pillow and rectal probe for temperature measurements.</td>
		</tr>
		<tr height="64">
			<td height="64" style="height:64px;width:111px;">Anesthesia equipment</td>
			<td style="width:91px;">General Anesthetic Services</td>
			<td style="width:136px;"></td>
			<td style="width:179px;"></td>
		</tr>
		<tr height="64">
			<td height="64" style="height:64px;width:111px;">Induction box</td>
			<td style="width:91px;">Vet Tech Solutions LTD</td>
			<td style="width:136px;"></td>
			<td style="width:179px;"></td>
		</tr>
		<tr height="160">
			<td height="160" style="height:160px;width:111px;">Cambridge split-magnet PET/MRI scanner</td>
			<td style="width:91px;">University of Cambridge</td>
			<td style="width:136px;"></td>
			<td style="width:179px;">A custom built PET/MRI scanner22 was used to perform the PET, its PET performance similar to an F120 micropet scanner23</td>
		</tr>
		<tr height="64">
			<td height="64" style="height:64px;width:111px;">Segment software</td>
			<td style="width:91px;">Medviso, Lund University</td>
			<td style="width:136px;"></td>
			<td style="width:179px;">Freely available</td>
		</tr>
		<tr height="43">
			<td height="43" style="height:43px;width:111px;">SPM-mouse</td>
			<td style="width:91px;">University of Cambridge</td>
			<td style="width:136px;"></td>
			<td style="width:179px;">Freely available</td>
		</tr>
	</tbody>
</table>

mri and pet in mouse models of myocardial infarction

Myocardial infarction is one of the leading causes of death in the Western world. The similarity of the mouse heart to the human heart has made it an ideal model for testing novel therapeutic strategies.
In vivo magnetic resonance imaging (MRI) gives excellent views of the heart noninvasively with clear anatomical detail, which can be used for accurate functional assessment. Contrast agents can provide basic measures of tissue viability but these are nonspecific. Positron emission tomography (PET) is a complementary technique that is highly specific for molecular imaging, but lacks the anatomical detail of MRI. Used together, these techniques offer a sensitive, specific and quantitative tool for the assessment of the heart in disease and recovery following treatment.
In this paper we explain how these methods are carried out in mouse models of acute myocardial infarction. The procedures described here were designed for the assessment of putative protective drug treatments. We used MRI to measure systolic function and infarct size with late gadolinium enhancement, and PET with fluorodeoxyglucose (FDG) to assess metabolic function in the infarcted region. The paper focuses on practical aspects such as slice planning, accurate gating, drug delivery, segmentation of images, and multimodal coregistration. The methods presented here achieve good repeatability and accuracy maintaining a high throughput.

One of the advantages of using MRI is that a longitudinal design can be used in order to stage disease. This is especially important when evaluating novel compounds, as the time course of effect may not be known. Variations in heart volumes due to the disease progression in the same animal are shown in Figure 4. The figure clearly shows the effects of remodeling post myocardial infarction.
Correct slice geometry is crucial for the success of a cardiac MRI experiment. Represent...

Watch this Scientific Journal Video about MRI and PET in Mouse Models of Myocardial Infarction at JoVE.com

MRI and PET in Mouse Models of Myocardial Infarction

We describe how to perform MRI and PET imaging of the mouse heart. The protocol is tailored to assess treatment efficacy in models of myocardial infarction and heart failure.

Myocardial infarction is one of the leading causes of death in the Western world. The similarity of the mouse heart to the human heart has made it an ...

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11.6K Views.  Unversity of Cambridge. We describe how to perform MRI and PET imaging of the mouse heart. The protocol is tailored to assess treatment efficacy in models of myocardial infarction and heart failure.