High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions

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4.0K Views

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14:58 min

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March 5th, 2022

DOI :

10.3791/62324-v

March 5th, 2022

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André Nicolau Aquime Gonçalves¹^,², Vanessa Escolano Maso³, Ícaro Maia Santos de Castro²^,³, Amanda Pereira Vasconcelos³, Rodrigo Luiz Tomio Ogava²^,³, Helder I Nakaya²^,³^,⁴

¹Laboratory of Pathology of Infectious Diseases, Department of Pathology, Medical School, University of São Paulo, ²Scientific Platform Pasteur USP, ³Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, ⁴Hospital Israelita Albert Einstein

Podsumowanie

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High throughput Transcriptome Analysis

Host pathogen Interactions

Quality Control

Reference Genome Mapping

Differential Gene Expression

Co expression Analysis

Molecular Perturbation Analysis

Functional Analysis

Docker Container

Linux System Tools

Chikungunya Virus

Docker Installation

Windows Terminal

Rozdziały w tym wideo

0:07

Introduction

1:15

Docker Desktop Installation

4:25

Quality Control

5:10

Mapping and Annotation Steps

5:51

Differentially Expressed Genes Process

6:10

Transfer Data to the Personal Computer

12:02

Representative Results

14:22

Conclusions

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