Rapid High Throughput Amylose Determination in Freeze Dried Potato Tuber Samples

Summary

This protocol describes a high through put colorimetric method that relies on the formation of a complex between iodine and chains of glucose molecules in starch. Iodine forms complexes with both amylose and long chains within amylopectin. After the addition of iodine to a starch sample, the maximum absorption of amylose and amylopectin occurs at 620 and 550 nm, respectively. The amylose/amylopectin ratio can be estimated from the ratio of the 620 and 550 nm absorbance values and comparing them to a standard curve in which specific known concentrations are plotted against absorption values. This high throughput, inexpensive method is reliable and reproducible, allowing the evaluation of large populations of potato clones. 

Abstract

This protocol describes a high through put colorimetric method that relies on the formation of a complex between iodine and chains of glucose molecules in starch. Iodine forms complexes with both amylose and long chains within amylopectin. After the addition of iodine to a starch sample, the maximum absorption of amylose and amylopectin occurs at 620 and 550 nm, respectively. The amylose/amylopectin ratio can be estimated from the ratio of the 620 and 550 nm absorbance values and comparing them to a standard curve in which specific known concentrations are plotted against absorption values. This high throughput, inexpensive method is reliable and reproducible, allowing the evaluation of large populations of potato clones. 

Introduction

Approximately 80% of the fresh weight of a potato tuber is water; nearly all of the remaining dry matter is starch¹. Most of the starch (70%) is composed of amylopectin, while the remainder is amylose. The ratio between amylose and amylopectin is the most important property influencing the physical properties of starch. Amylose is a linear alpha 1-4 glucose chain, while amylopectin is a linear alpha 1-4 chain with alpha 1-6 branches². Methods such as iodine binding, differential scanning calorimetry (DSC), high performance size exclusion chromatography (HPSEC) and concanavalin A interactions have been developed for starch determination in different crop species^3,4. Each protocol requires special skills and equipment, making it difficult to scale up to quantify numerous samples at a time. The method we present here is a modified protocol from Hovenkamp-Hermelink et al.⁵ which is a dual wavelength iodine binding method based on stained starch granules. The advantages of this method versus others include the amylose determination from raw starch without purifying it and the use of the dual wavelength system to increase the precision of the method^4,6. 

Protocol

1. Amylose Determination from Potato Tuber Starch

1. Peel and cut fresh tubers into small cubes.
2. Place potato cubes in small brown bags and store overnight at -80 °C.
3. Transfer potato cubes to nylon bags and for freeze drying.
4. After freeze dried, grind the potato sample into powder using mortar and pestle or a Wiley Mill.
5. In a 50 ml tube, add 20-30 mg of the freeze-dried, ground tuber sample.
6. Prepare a solution of 45% (w/v) perchloric acid (mix 24.4 ml of 60% perchloric acid and 25.6 ml of ultra-pure water.
7. Add 500 μl of 45% (w/v) perchloric acid and shake or swirl it to disperse starch granules.
8. After a four-minute incubation period at room temperature, add 16 ml of ultra-pure water to the solution and mix by vortexing.
9. After non-soluble material has settled to the bottom of the tube (7-10 min later), transfer 40 μl of the solution to a microtiter plate (avoiding the pipetting of any particles).
10. Add 50 μl of iodine solution (2 g KI + 1 g I₂ in 900 ml of ultra-pure water) and mix the sample by pipetting.
11. Read the absorbance at 550 nm and 620 nm immediately.
12. Determine the amylose percentage after comparing the amylose/amylopectin ratio of each sample (620 nm/550 nm absorbance) with a standard curve generated from amylose and amylopectin solutions at a range of concentrations. This procedure will be described next. Read the blank (iodine solution and perchloric acid) along with the test samples. Use blanked data for the analyses.

2. Amylose/amylopectin Curve

1. In separate tubes weigh 12.5 mg of amylose and 12.5 mg of amylopectin.
2. Add to each tube 5 ml of 45% (w/v) perchloric acid and dissolve completely.
3. For each of the solutions (amylose and amylopectin), bring to a final volume of 50 ml with ultra-pure water.
4. Mix 6.25 ml of amylose stock from the previous step with 18.75 ml ultra-pure water. This will make a 6.25 mg/ml amylose solution.
5. Repeat the procedure for the amylopectin solution.
6. Using the amylose and amylopectin standard solutions from steps 2.4 and 2.5, prepare the percent amylose standards which are 0-100% amylose (100-0% amylopectin) to a final volume of 5 ml to create the standard curve in 10% intervals.
   For example, to prepare:
   The 0% amylose / 100% amylopectin standard, pipette 5 ml amylopectin solution.
   The 10% amylose / 90% amylopectin standard, combine 0.5 ml amylose and 4.5 ml amylopectin solutions.
   The 20% amylose / 80% amylopectin standard, combine 1.0 ml amylose and 4.0 ml amylopectin solutions.
   The 30% amylose / 70% amylopectin standard, combine 1.5 ml amylose and 3.5 ml amylopectin solutions.
   The 40% amylose / 60% amylopectin standard, combine 2.0 ml amylose and 2.0 ml amylopectin solutions.
   The 50% amylose / 50% amylopectin standard, combine 2.5 ml amylose and 2.5 ml amylopectin solutions.
   The 60% amylose / 40% amylopectin standard, combine 3.0 ml amylose and 2.0 ml amylopectin, and so on).
7. Transfer 40 μl of each standard mixture to a microtiter plate. Include a well with 40 μl 45% (w/v) perchloric acid as the blank.
8. Add 50 μl of iodine solution (2 g KI + 1 g I₂ in 900 ml of ultra-pure water) and mix each sample (including the blank) by pipetting.
9. Read absorbances at 550 nm and 620 nm immediately and calculate the amylose/ amylopectin ratio for each concentration.

Results

The standard curve constructed from blanked data of different amylose/amylopectin concentration solutions shows approximate absorbance ratios ranging from 0.7 to 1.6 (Table 1). A linear regression trend line from these data is later used for inferring amylose content in freeze dried potato samples (Figure 1).

The plant production environment has some effect on the amylose content in the potato tuber⁷. Replicated amylose content determinations in two...

Discussion

Amylose content in potato tubers typically ranges from 20-35%^7,8. If most values are outside this range, consider these possible errors: 1) raw data were used instead of blanked data for the construction of the amylose/amylopectin standard curve; 2) raw data were used instead of blanked data for the determination of the amylose/amylopectin ratios from the potato samples; or 3) the water used for the analysis was not pure enough. We noticed that by using distilled water and not ultra-pure water in the analysis,...

Materials

Name	Company	Catalog Number	Comments
Reagents
Amylose	Sigma	859656
Amylopectin	Sigma	A8515
Perchloric Acid 60%	Sigma	311413	Very hazardous to skin and eyes
Iodine	Sigma	23214TD
Potassium iodide	Sigma	08625JE
Equipment
Plate Reader	Bio Tek	ELx800