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Computational and Systems Biology,
Biozentrum,
Computational and Systems Biology, Biozentrum
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Gene regulation: reviving the message.
Nature Sep, 2002 | Pubmed ID: 12239557
Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase.
The EMBO journal Feb, 2004 | Pubmed ID: 14749727
Sequence motifs that distinguish ATP(CTP):tRNA nucleotidyl transferases from eubacterial poly(A) polymerases.
RNA (New York, N.Y.) Jun, 2004 | Pubmed ID: 15146073
Exchange of regions between bacterial poly(A) polymerase and the CCA-adding enzyme generates altered specificities.
Molecular cell Aug, 2004 | Pubmed ID: 15304219
Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase.
Journal of molecular biology Aug, 2004 | Pubmed ID: 15328606
A new yeast poly(A) polymerase complex involved in RNA quality control.
PLoS biology Jun, 2005 | Pubmed ID: 15828860
The mechanism of morphogenesis in a phase-separating concentrated multicomponent alloy.
Nature materials Mar, 2007 | Pubmed ID: 17322868
RNA-specific ribonucleotidyl transferases.
RNA (New York, N.Y.) Nov, 2007 | Pubmed ID: 17872511
Determinants of substrate specificity in RNA-dependent nucleotidyl transferases.
Biochimica et biophysica acta Apr, 2008 | Pubmed ID: 18177750
Crystal structure of the 25 kDa subunit of human cleavage factor Im.
Nucleic acids research Jun, 2008 | Pubmed ID: 18445629
Arginine methylation in subunits of mammalian pre-mRNA cleavage factor I.
RNA (New York, N.Y.) Aug, 2010 | Pubmed ID: 20562214
Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.
Cell reports Jun, 2012 | Pubmed ID: 22813749
Cleavage factor Im is a key regulator of 3' UTR length.
RNA biology Dec, 2012 | Pubmed ID: 23187700
Crystal structure of human poly(A) polymerase gamma reveals a conserved catalytic core for canonical poly(A) polymerases.
Journal of molecular biology Jan, 2014 | Pubmed ID: 24076191
Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors.
Wiley interdisciplinary reviews. RNA Mar-Apr, 2014 | Pubmed ID: 24243805
Knowing what we do and doing what we should: quality assurance in hemodialysis.
Nephron. Clinical practice , 2014 | Pubmed ID: 24751758
Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33.
Genes & development Nov, 2014 | Pubmed ID: 25301781
Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells.
Nature communications , 2014 | Pubmed ID: 25413384
Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data.
Genome biology Jul, 2015 | Pubmed ID: 26201343
Redesigning CLIP for efficiency, accuracy and speed.
Nature methods May, 2016 | Pubmed ID: 27243472
A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.
Genome research 08, 2016 | Pubmed ID: 27382025
High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq.
Nucleic acids research Mar, 2017 | Pubmed ID: 28031372
University of Basel
Georges Martin1,
Ralf Schmidt1,
Andreas J. Gruber1,
Souvik Ghosh1,
Walter Keller1,
Mihaela Zavolan1,2
1Computational and Systems Biology, Biozentrum, University of Basel,
2Swiss Institute of Bioinformatics, Biozentrum, University of Basel
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