Environmental Genomics and Systems Biology Division
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A nanostructure-initiator mass spectrometry-based enzyme activity assay.
Proceedings of the National Academy of Sciences of the United States of America Mar, 2008 | Pubmed ID: 18319341
Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry.
Rapid communications in mass spectrometry : RCM Jun, 2009 | Pubmed ID: 19449318
Mass spectrometry based metabolomics and enzymatic assays for functional genomics.
Current opinion in microbiology Oct, 2009 | Pubmed ID: 19695948
Rapid screening of fatty acids using nanostructure-initiator mass spectrometry.
Analytical chemistry May, 2010 | Pubmed ID: 20356051
Dealing with the unknown: metabolomics and metabolite atlases.
Journal of the American Society for Mass Spectrometry Sep, 2010 | Pubmed ID: 20452782
Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging.
BioTechniques Aug, 2010 | Pubmed ID: 20701590
Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling.
Analytical chemistry Nov, 2010 | Pubmed ID: 20945921
Metabolome-proteome differentiation coupled to microbial divergence.
mBio Oct, 2010 | Pubmed ID: 20978538
Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity.
Integrative biology : quantitative biosciences from nano to macro Apr, 2011 | Pubmed ID: 21212877
Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002.
Molecular bioSystems Dec, 2011 | Pubmed ID: 21935552
Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme.
Rapid communications in mass spectrometry : RCM Mar, 2012 | Pubmed ID: 22328213
Low-dose ionizing radiation-induced blood plasma metabolic response in a diverse genetic mouse population.
Radiation research Dec, 2012 | Pubmed ID: 23051006
Metabolic footprinting of mutant libraries to map metabolite utilization to genotype.
ACS chemical biology Jan, 2013 | Pubmed ID: 23082955
Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics.
mBio Mar, 2013 | Pubmed ID: 23481603
Versatile synthesis of probes for high-throughput enzyme activity screening.
Analytical and bioanalytical chemistry May, 2013 | Pubmed ID: 23568610
Mass spectrometry imaging for in situ kinetic histochemistry.
Scientific reports , 2013 | Pubmed ID: 23584513
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust.
The ISME journal Nov, 2013 | Pubmed ID: 23739051
Robust automated mass spectra interpretation and chemical formula calculation using mixed integer linear programming.
Analytical chemistry Oct, 2013 | Pubmed ID: 24032353
Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics.
Marine drugs Sep, 2013 | Pubmed ID: 24084783
OpenMSI: a high-performance web-based platform for mass spectrometry imaging.
Analytical chemistry Nov, 2013 | Pubmed ID: 24087878
"Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria.
Analytical chemistry Nov, 2013 | Pubmed ID: 24111681
High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production.
Frontiers in microbiology , 2013 | Pubmed ID: 24367356
Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry.
ACS chemical biology Sep, 2014 | Pubmed ID: 24984213
High throughput screening of enzyme activity with mass spectrometry imaging.
Current opinion in biotechnology Feb, 2015 | Pubmed ID: 25129648
The lethal cargo of Myxococcus xanthus outer membrane vesicles.
Frontiers in microbiology , 2014 | Pubmed ID: 25250022
Nanostructure imaging mass spectrometry: the role of fluorocarbons in metabolite analysis and yoctomole level sensitivity.
Methods in molecular biology (Clifton, N.J.) , 2015 | Pubmed ID: 25361674
Exometabolomics and MSI: deconstructing how cells interact to transform their small molecule environment.
Current opinion in biotechnology Aug, 2015 | Pubmed ID: 25855407
Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust.
Frontiers in microbiology , 2015 | Pubmed ID: 25926821
Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee.
Nature communications Jul, 2015 | Pubmed ID: 26173063
Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases.
Metabolites Jul, 2015 | Pubmed ID: 26287255
Exometabolite niche partitioning among sympatric soil bacteria.
Nature communications Sep, 2015 | Pubmed ID: 26392107
Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS.
Frontiers in bioengineering and biotechnology , 2015 | Pubmed ID: 26528471
High-throughput platforms for metabolomics.
Current opinion in chemical biology Feb, 2016 | Pubmed ID: 26544850
Use of Nanostructure-Initiator Mass Spectrometry to Deduce Selectivity of Reaction in Glycoside Hydrolases.
Frontiers in bioengineering and biotechnology , 2015 | Pubmed ID: 26579511
Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules.
Biotechnology for biofuels , 2015 | Pubmed ID: 26697109
Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry.
Analytical chemistry Feb, 2016 | Pubmed ID: 26741735
Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism.
ACS synthetic biology 07, 2016 | Pubmed ID: 26885935
Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition.
Frontiers in microbiology , 2016 | Pubmed ID: 27014243
Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism.
Frontiers in microbiology , 2016 | Pubmed ID: 27148214
Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges.
mBio 05, 2016 | Pubmed ID: 27178263
Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis.
mBio 08, 2016 | Pubmed ID: 27555310
Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses.
Analytical chemistry Oct, 2016 | Pubmed ID: 27560777
A robust gene-stacking method utilizing yeast assembly for plant synthetic biology.
Nature communications Oct, 2016 | Pubmed ID: 27782150
On-chip integration of droplet microfluidics and nanostructure-initiator mass spectrometry for enzyme screening.
Lab on a chip 01, 2017 | Pubmed ID: 27957569
Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (DO) Stable Isotope Probing.
ACS chemical biology 03, 2017 | Pubmed ID: 28068058
Dynamic substrate preferences predict metabolic properties of a simple microbial consortium.
BMC bioinformatics Jan, 2017 | Pubmed ID: 28114881
Determination of glycoside hydrolase specificities during hydrolysis of plant cell walls using glycome profiling.
Biotechnology for biofuels , 2017 | Pubmed ID: 28184246
OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging.
Analytical chemistry Jun, 2017 | Pubmed ID: 28467051
A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism.
PLoS genetics May, 2017 | Pubmed ID: 28467421
SbCOMT (Bmr12) is involved in the biosynthesis of tricin-lignin in sorghum.
PloS one , 2017 | Pubmed ID: 28594846
Exometabolomic Analysis of Cross-Feeding Metabolites.
Metabolites Oct, 2017 | Pubmed ID: 28976938
Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
Trends in plant science Jan, 2018 | Pubmed ID: 29050989
Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium,.
mBio Nov, 2017 | Pubmed ID: 29138306
Linking soil biology and chemistry in biological soil crust using isolate exometabolomics.
Nature communications 01, 2018 | Pubmed ID: 29296020
Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites.
Frontiers in microbiology , 2017 | Pubmed ID: 29312276
An integrated workflow for phenazine-modifying enzyme characterization.
Journal of industrial microbiology & biotechnology Mar, 2018 | Pubmed ID: 29546662
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.
Nature microbiology Apr, 2018 | Pubmed ID: 29556109
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