hydroponic cultivation of arabidopsis thaliana seedlings for bacterial inoculations

Arabidopsis thaliana'da Rizobakteriyel Kolonizasyon Tespiti

There are quantitative and qualitative methods for detecting rhizosphere colonization by a single bacterial strain. For the qualitative method, a strain that constitutively expresses fluorescence should be used, and the fluorescence distribution and intensity should be examined under fluorescence microscopy or laser confocal instruments1,2. Those strategies can well reflect bacterial colonization in situ3, but they are not as accurate as traditional plate counting methods in quantification. Besides, due to the limitation of only displaying partial root zones under the microscope, sometimes it can be influenced by subjective bias. 
Here, we describe a quantitative method, which includes collecting the colonized bacterial cells and counting the bacterial CFUs on a plate. This method is based on dilution and plating by which the colonized strains that were stripped from plant roots can be counted, and the total colonized bacteria number on the root can be calculated4,5. 
First, A. thaliana was cultured in hydroponic conditions, and then bacterial cells were inoculated in the rhizosphere at a final concentration of 0.01 OD600. The infected root tissues were harvested 2 days post-inoculation and washed in sterile water to remove the uncolonized bacterial cells. Further, bacterial cells colonized on the root were collected, diluted in phosphate-buffered saline (PBS) buffer, and plated onto a Luria-Bertani (LB) agar medium. After incubation at 37 &#176;C for 10 h, single colonies on LB plates were counted and normalized to determine the bacterial cells colonized on roots.
This method is highly applicable, has good repeatability, and is more suitable for accurate rhizosphere bacterial colonization determination.

Yazar Spotlight: Geliştirilmiş Mikrobiyal Gübre Verimliliği için Bitki Köklerinde Rizobakteri Kolonizasyonunun Geliştirilmesi

Hidroponik Durumdaki Arabidopsis thaliana Köklerinde Bakteri Kolonizasyonunun Ölçülmesi

Our research focuses on the interaction of beneficial rhizobacteria with plant roots. We are looking for the key mechanisms to enhance the colonization of beneficial bacteria, thus improving the efficiency and the stability of microbial fertilizers in the field. The methods for bacterial colonization of plant roots have been extensively studied, but there are still problems.For example, it's hard to measure the colonization on different sites distinctively, In the future we think applying microscope and high throughput counting will help to solve the problems. Our protocol is highly applicable with good repeatability, and it is more suitable for accurate rhizosphere bacteria colonization determination.

Bakteri Aşılamaları için Arabidopsis thaliana Fidelerinin Hidroponik Yetiştiriciliği

Arabidopsis Thaliana Fideleri için kültür ortamını hazırlamak için, yarı kuvvetli Murashige ve Skoog veya MS ortamını %2 sükroz ve %0.9 agar ile karıştırın. Sterilizasyondan sonra, nemi korumak için havayla kurumasını önlemek için ortamı kare bir Petri kabına dökün. Arabidopsis tohumlarını 12 saatten fazla bir süre boyunca dört santigrat derecede bir mililitre steril su içeren iki mililitrelik bir mikro santrifüj tüpüne daldırın.Daha sonra tohumları bir mililitre% 2 sodyum hipoklorit çözeltisi ile iki dakika sterilize edin. Sodyum hipoklorit çözeltisini çıkarmak için tohumları altı kez steril suyla iyice yıkayın. Steril bir mililitrelik uç kullanarak, tohumları MS agar kabına ekin.Petri kabını nefes alabilen tıbbi bantla kapatın ve bir hafta boyunca 28 santigrat derecede% 40 ila 60 arasında nem ile hafif bir inkübatöre dikey olarak yerleştirin, 40 mikron gözenek boyutunda bir hücre süzgecinde beş milimetre delikler açın ve 115 santigrat derecede 30 dakika sterilize edin. Çizimden sonra, yedi günlük üç A thaliana bitkisini bir hücre süzgecinin deliklerinden nakledin ve bunları% 0.5 sükroz içeren üç mililitre yarı güçlü MS ortamı içeren altı oyuklu bir plakaya koyun.

hydroponic-cultivation-arabidopsis-thaliana-seedlings-for-bacterial

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Hydroponic Cultivation of Arabidopsis thaliana Seedlings for Bacterial Inoculations

88 Görüntüleme.  Chinese Academy of Agricultural Sciences. Arabidopsis Thaliana Fideleri için kültür ortamını hazırlamak için, yarı kuvvetli Murashige ve Skoog veya MS ortamını %2 sükroz ve %0.9 agar ile karıştırın. Sterilizasyondan sonra, nemi korumak için havayla kurumasını önlemek için ortamı kare bir Petri kabına dökün. Arabidopsis tohumlarını 12 saatten fazla bir süre boyunca dört santigrat derecede bir mililitre steril su içeren iki mililitrelik bir mikro santrifüj tüpüne daldırın.Daha sonra tohumları b...

Video: Bakteri Aşılamaları için Arabidopsis thaliana Fidelerinin Hidroponik Yetiştiriciliği

Measuring Bacterial Colonization on Arabidopsis thaliana Roots in Hydroponic Condition

Measuring bacterial colonization on Arabidopsis thaliana root is one of the most frequent experiments in plant-microbe interaction studies. A standardized method for measuring bacterial colonization in the rhizosphere is necessary to improve reproducibility. We first cultured sterile A.thaliana in hydroponic conditions and then inoculated the bacterial cells in the rhizosphere at a final concentration of OD600 of 0.01. At 2 days post-inoculation, the root tissue was harvested and washed three times in sterile water to remove the uncolonized bacterial cells. The roots were then weighed, and the bacterial cells colonized on the root were collected by vortex. The cell suspension was diluted in a gradient with a phosphate-buffered saline (PBS) buffer, followed by plating onto a Luria-Bertani (LB) agar medium. The plates were incubated at 37 &#176;C for 10 h, and then, the single colonies on LB plates were counted and normalized to indicate the bacterial cells colonized on roots. This method is used to detect bacterial colonization in the rhizosphere in mono-interaction conditions, with good reproducibility.

Colonization of plant growth-promoting rhizobacteria (PGPR) in the rhizosphere is essential for its growth-promoting effect. It is necessary to standardize the method of detection of bacterial rhizosphere colonization. Here, we describe a reproducible method for quantifying bacterial colonization on the root surface.

Measuring bacterial colonization on Arabidopsis thaliana root is one of the most frequent experiments in plant-microbe interaction studies. A standardized ...