Name: Sample Preparation for the Three-Dimensional Reconstruction of Pancreatic Cancer Cell Mitochondria
Uploaded: 2023-06-23T14:40:00
Description: Watch this Scientific Journal Video about Sample Preparation for the Three-Dimensional Reconstruction of Pancreatic Cancer Cell Mitochondria at JoVE.com

sample preparation for the three-dimensional reconstruction of pancreatic cancer cell mitochondria

3D-техника для визуализации митохондриальных кристаллов в клетках рака поджелудочной железы

Mitochondria are one of the most important organelles in the cell. They serve as the central hub of cellular bioenergetics and metabolism1,2 and play a critical role in cancer3. Pancreatic cancer (PC) is one of the most difficult cancers4 to treat due to its rapid spread and high mortality rate. Mitochondrial dysfunction, which is mainly caused by changes in the mitochondrial morphology3,5,6,7, has been linked to the disease mechanisms underlying PC8. Mitochondria are also highly dynamic, which is reflected by the frequent and dynamic changes in their network connectivity and cristae structure9. The reshaping of the cristae structure can directly impact the mitochondrial function and cellular state10,11, which are significantly altered during tumor cell growth, metastasis, and tumor microenvironment changes12,13.
In recent years, scientists have studied this organelle using EM observation14,15,16,17; for example, researchers have analyzed the mitochondrial dynamics using 3D reconstruction techniques6,7,18,19. The general concept and method for the 3D reconstruction of electron microscopy images were formally established as early as 196820 and involved combining electron microscopy, electron diffraction, and computer image processing to reconstruct the T4 phage tail. Up until now, electron microscopy 3D imaging technology has made significant advancements in terms of the image resolution21, degree of automation22, and processing volume23 and has been used on an increasingly broad scale in biological research, from the tissue level to the organelle ultrastructure level at the nanometer scale24. In recent years, electron microscopy 3D imaging has also become a promising technology for a wide range of applications25,26,27.
The growing attention on mitochondrial cristae particularly illustrates the essential requirements for ultrastructural volume imaging. Transmission electron microscopy (TEM) has been used to visualize samples collected on a copper grid (400 mesh)28, with the electron beam passing through the section. However, due to the limited range of the copper grid, it is impossible to fully image continuous slices of the same sample29. This complicates the study of target structures during TEM imaging. Additionally, TEM relies on time-consuming and error-prone manual tasks, including cutting and collecting multiple slices and imaging them sequentially21, so it is not adapted for ultrastructural reconstructions of large-volume samples23. At present, the high-resolution reconstruction of large-volume sample imaging is achieved through the use of specialized equipment, such as the TEM camera array (TEMCA)30 or two second-generation TEMCA systems (TEMCA2)31, which enable automated high-throughput imaging in a short time. However, this type of imaging does not have the advantage of being easy to obtain and universal due to the requirement for customized equipment.
Compared with TEM, the method for automatically generating thousands of serial volumetric images for large areas based on SEM32,33 enhances the efficiency and reliability of serial imaging and delivers higher z-resolutions34. For example, serial block-face scanning electron microscopy (SBF-SEM) and focused ion beam scanning electron microscopy (FIB-SEM) have both made it possible to achieve the 3D reconstruction of ultrastructure with high speed, efficiency, and resolution35,36. However, it is inevitable that the block surface is mechanically shaved off by the diamond knife of the SBF-SEM or by milling with the focused ion beam of FIB-SEM33,37. Due to the destructiveness of the two methods to the samples, it is not possible to reconstruct the same target structure again for further analysis38,39,40. In addition, few studies have attempted to reconstruct the 3D organelle ultrastructure of cancer cells using EM to observe pathological changes12. For these reasons, in order to further elucidate the pathological mechanisms of cancer cells, such as pancreatic cancer cells, we propose a novel technology for the 3D reconstruction of serial section images using an ultramicrotome and a field emission scanning electron microscope (FE-SEM) to analyze the mitochondrial ultrastructure at the cristae level; with this technology, high-resolution data can be acquired using an efficient and accessible method. The serial ultrathin sections made using an ultramicrotome can be semi-permanently stored in a grid case and reimaged multiple times, even after several years41. FE-SEM is highly valued as a tool in various research fields due to its ability to provide high-resolution imaging, high magnification, and versatility42. In an attempt to display the fine structure of organelles in 3D, the technique for producing serial 2D image stacks with useful resolution using back-scattered electrons produced by FE-SEM43,44 can also be used to achieve high-throughput and multi-scale imaging of target regions or their associated structures without special equipment45. The generation of charge artifacts directly affects the quality of the acquired images, so it is particularly important to keep the dwell time short.
Thus, the present study elaborates on the experimental procedures employed in this SEM technique to reconstruct the 3D structure of mitochondrial cristae46. Specifically, we show the process developed to achieve the semi-automatic segmentation of mitochondrial regions and digitize the 3D reconstruction using Amira software, which also involves making slice samples using the conventional OTO specimen preparation method44,47, completing the section collection using ultramicrotome slicing, and acquiring sequential 2D data by FE-SEM.

Автор в центре внимания: трехмерная методика визуализации митохондриальных ультраструктурных изменений в клетках рака поджелудочной железы  

Трехмерная методика визуализации ультраструктурных изменений митохондрий в раковых клетках поджелудочной железы

This project aims to review the anti-cancer effect of drugs by changing the structure at the subcellular nano-scale level, and establishing the link between organelle morphology and the cancer pathological mechanism. This technology combines traditional electron microscopy technology with three dimensional reconstruction technology without special equipment. Compared to other techniques, it can improve imaging efficiency and the reconstruction flexibility, and the real life reconstruction of target structures at any time.So it's highly easy and universal. This technology of three dimensional reconstruction of the continuous ultra-thin slides can repeatedly restore the real stereochemical without specific expensive equipment. It can be used for qualitative and quantitative analysis of all organelles at any time.It realizes the easy operation of observation.

Watch this Scientific Journal Video about Sample Preparation for the Three-Dimensional Reconstruction of Pancreatic Cancer Cell Mitochondria at JoVE.com

Sample Preparation for the Three-Dimensional Reconstruction of Pancreatic Cancer Cell Mitochondria  

Подготовка образцов для трехмерной реконструкции митохондрий раковых клеток поджелудочной железы

Для начала инокулируют 2 миллиона клеток pan02 в 12 миллилитрах DMEM и инкубируют при температуре 37 градусов Цельсия и влажности 95%, углекислого газа 5% и воздуха 35%. Через 48 ч центрифугируют культуру при 28 г в течение 2 мин и отбраковывают надосадочную жидкость. Зафиксируйте клетки, добавив 1 миллилитр 2,5%-ного глутарового альдегида в пробирки для микроцентрифуг объемом 1,5 миллилитра на ночь при температуре 4 градуса Цельсия.На следующий день центрифугируют образцы при 1006 г в течение пяти минут и аспирируют фиксатор, а затем дважды промывают образец 0,1 молярным PBS. Затем образцы дважды промывают двойной дистиллированной водой по 10 минут каждый. Далее добавляют 50 микролитров раствора 1%-ного тетраоксида осмия и 1,5%-ного ферроцианида калия в соотношении 1 к 1 и выдерживают при 4 градусах Цельсия в течение 1 часа.Центрифугируют и промывают образцы дважды 0,1 молярным PBS и один раз двойной дистиллированной водой. Затем добавьте 1 миллилитр 1%-ного тиокарбогидразида и инкубируйте при комнатной температуре от 30 до 60 минут. После инкубации центрифугу и надосадочную жидкость выбросить, предварительно промыв образцы 4 раза двойной дистиллированной водой.Далее добавляют 50 микролитров 1%-ного тетраоксида осмия и дают закрепиться при комнатной температуре в течение 1 часа. Снова центрифугируйте и промойте образцы 4 раза двойной дистиллированной водой. Добавьте 1 миллилитр 2%-ного уранилацетата и дайте ему окраситься при температуре 4 градуса Цельсия в течение ночи.После промывки образцов двойной дистиллированной водой добавляют 1 миллилитр раствора Уолтона и выдерживают при температуре 60 градусов Цельсия в течение одного часа. После инкубации промыть клетки 4 раза двойной дистиллированной водой перед обезвоживанием в градуированной серии этанола в течение 10 минут каждая. Затем дважды обезвоживают в одном миллилитре 100% ацетона по 10 минут каждый.Затем смешайте 200 микролитров ацетона с эпоксидной смолой Pon 812 в соотношении 3 к 1, 1 к 1 и 1 к 3. И замочите образцы в смоле при комнатной температуре на 2, 4 и 4 часа соответственно После соответствующей инкубации пропитайте образцы на ночь 100%-ной эпоксидной смолой Pon 812. На следующий день переложите образцы в плоскую форму для закладных и полимеризуйте их в духовке при температуре 60 градусов Цельсия в течение 48 часов.После полимеризации с помощью ультрамикротома на гидролизованных кремниевых пластинах соберите последовательно нарезанные полоски толщиной 70 нанометров и высушите их в печи при температуре 60 градусов Цельсия в течение 10 минут.

Research

JoVE Journal

Cancer Research

Sample Preparation for the Three-Dimensional Reconstruction of Pancreatic Cancer Cell Mitochondria

A Three-Dimensional Technique for the Visualization of Mitochondrial Ultrastructural Changes in Pancreatic Cancer Cells

Understanding the dynamic features of the cell organelle ultrastructure, which is not only rich in unknown information but also sophisticated from a ...