Name: a modular microfluidic technology for systematic studies of colloidal semiconductor nanocrystals
Uploaded: 2018-05-10T15:00:00.000+00:00
Duration: 9 min 58 s
Description: Watch this Scientific Journal Video about A Modular Microfluidic Technology for Systematic Studies of Colloidal Semiconductor Nanocrystals at JoVE.com

The authors gratefully acknowledge the financial support provided by North Carolina State University. Milad Abolhasani and Robert W. Epps gratefully acknowledge financial support from the UNC Research Opportunities Initiative (UNC-ROI) grant.

1. Reactor Assembly
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/57666/57666fig1.jpg" /> 
Figure 1. Step-by-step illustration of a sample platform assembly process. The panels shows a step-by-step illustration of a sample platform assembly process detailing (i) the initial arrangement of the translation stage and optical post holders on the mounting bread broad, (ii) the mounting of the precursor tube mounting stage and the flow cell onto optical posts, (iii) the attachment of the microfluidic tubing to the custom cross-junction which is under transparency to reveal flow pathways, (iv) the securing of the precursor tubing while simultaneously positioning the first sampling unit, (v) the subsequent connection of additional sampling units with the reactor tubing run through each module, (vi) the tubing pathway of the reactor extension units, and (vii) the securing of the final sampling unit to support the structure and optical posts. <a href="/files/ftp_upload/57666/57666fig1large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
Note: Due to the wide array of possible configurations, the exact assembly process of the microfluidic platform might vary; however, the general methods are the same for all arrangements. Detailed below and in Figure 1 is the platform assembly process for a two-precursor, multi-phase flow format with a single extension unit after the 14th sampling port.
<ol>
	<li>Secure the translation stage and post holders to the optical breadboard. Connect the junction mounting stage and flow cell to the posts and fasten them to the platform.</li>
	<li>Wire the reactor tubing and precursor feed lines to the custom cross-junction and feed the tubing through the channels in the raised stage. Ensure that each tubing segment is cut to a length that may comfortably reach the respective syringe pump or collection vial.</li>
	<li>Connect the first sampling port unit to the junction stage and fasten the precursor line cover to the raised mounting stage, securing all the tubular components and the first sampling unit in place.</li>
	<li>Add additional modular reactor units by running the reactor tubing through the desired component and connecting the segments to the rest of the assembled structure. Build out the units from the junction until the desired length and arrangement is obtained. 
	NOTE: The reactor tubing should fit firmly within each unit. Deformations in the tubing (stretching, crimping, etc.) significantly affect the optical signal strength.</li>
	<li>Fasten the support structure to the outlet of the last sampling segment and secure the support to the optical posts connected to the breadboard.</li>
	<li>Connect the feed lines of the flow system to the computer-controlled syringe pumps and feed the reactor outlet into a nitrogen gas pressurized (~12 psig) collection vial.</li>
	<li>Connect 3 fiber optic patch cords to the 3 flow cell ports, and attach the opposite ends to the spectrometer, LED, and deuterium-halogen (DH) light source respectively. Ensure that the cables are able to move smoothly with the full length of the translation stage and without any unnecessary strain on their connection with the flow cell to complete platform assembly (as shown in Figure 2).</li>
</ol>
2. Precursor Preparation
NOTE: The reaction screening system may be applied to the synthesis of various colloidal semiconductor nanocrystals; however, for the purpose of platform development and validation, a CsPbBr3 perovskite synthesis, adapted from Wei et al.6 to better suit flow analyses, was used as a case study reaction. The precursor preparation process is detailed below.
<ol>
	<li>Prepare 15 mL of 0.013 M bromide precursor by combining 109 mg of tetraoctylammonium bromide, 1 mL of oleic acid, and 14 mL of toluene in a sealed 20-mL vial.</li>
	<li>Stir the mixture vigorously at room temperature until a clear solution is obtained.</li>
	<li>Prepare 48 mL of 0.0021 M cesium-lead precursor by first combining 0.6 mmol of cesium hydroxide, 0.6 mmol of lead(II) oxide, and 3 mL of oleic acid in a sealed 8-mL vial with a septum.
	<ol>
		<li>Pierce the septum with a needle for ventilation and heat the solution at 160 &#176;C in an oil bath and vigorously stir it until a clear solution forms (approximately 15 minutes).</li>
		<li>Move the vial and needle to an oven and heat them at 120 &#176;C for 1 h, then remove the venting needle and allow the solution to cool to room temperature in open air.</li>
	</ol>
	</li>
	<li>Add 0.5 mL of the high concentration cesium-lead mixture to 47.5 mL of toluene in a sealed 50-mL vial and stir vigorously.</li>
	<li>Load the bromide precursor and dilute the cesium-lead precursor into their respective syringes and begin the automated characterization process by flowing the two precursors together at the desired conditions (see step 3). 
	NOTE: For the experiments detailed under Representative Results, volumetric injection ratios of 6.4:1 of cesium-lead to bromide and 1:1 of gas carrier phase to net liquid were used at variable total flow rates.</li>
</ol>
3. Interface Operation
Note: The entirety of the data collection is carried out through the automated reaction platform after the user specifies a series of flow conditions to be tested. The general procedures for operating the user interface during this initial input period are detailed below.
<ol>
	<li>Open the automated operation software to view the user interface front panel (shown in Figure 3).</li>
	<li>Move to the Spectrometer settings panel and begin filling all inputs.
	<ol>
		<li>Paste the file path for the desired data saving folder in the File root for data box.</li>
		<li>Under Spectrometer VISA, select the USB connection address for the spectrometer. If the spectrometer USB address is not known, identify its location through the desktop&#39;s Device Manager page.</li>
		<li>Select the integration time, the number of spectra to average per sample, and the number of spectra to save per condition for both absorption (Abs) and fluorescence (Flu). In the case of the synthesis detailed in step 2, set an integration time of 12 ms for the absorption and 4 ms for the fluorescence averaged over 10 spectra.</li>
		<li>If characterizing single-phase flow, move on to the next step, leaving the Multiphase button off. If characterizing multi-phase flow, select the Multiphase button and set the minimum sample length so that approximately 2 complete gas-liquid oscillations may pass the sampling point. Then assign the number of samples to take within that sampling window. 
		NOTE: The sampling time-resolution within a multi-phase flow may be limited by the spectrometer settings, and adjustments may be needed if seeking a higher resolution.</li>
	</ol>
	</li>
	<li>Move to the Pump configuration panel and begin filling all inputs.
	<ol>
		<li>Under Syringe 1 COM, Syringe 2 COM, and Dual Pump COM, assign USB communication addresses to all pumps. See step 3.2.2 for the address identification process.</li>
		<li>Set the syringe inner diameters, which may be found on the pump interface or within the syringe manuals, for all syringes in use. For configurations not implementing all syringes, leave the extraneous syringe diameters at the default values.</li>
		<li>If collecting absorption reference spectra, identify an acceptable blank solution, load it into an attached syringe, and set the respective syringe to a moderate flow rate (approximately 300 &#181;L/min) in the respective Ref flow rate box.</li>
	</ol>
	</li>
	<li>Move to the System configuration panel and begin filling all inputs.
	<ol>
		<li>If the stage locations have been optimized and are properly displayed under Stage positions, select the Use previous position button and move to the next step. If the stage locations have not been optimized, assign a stage position window size and link the approximate stage positions (within the position range) using a .csv vector and the File path box. Leave the Stage increment box at 0.5 mm and the Startup Passes box at 8.</li>
		<li>Calculate the volume of the reactor segment from the center of the junction to the final sampling port and input that value into the System volume box. Leave the Minimum equilibrium time at 10 s.</li>
	</ol>
	</li>
	<li>Double-check the accuracy of all inputs and select the Run button in the top left of the interface. 
	NOTE: Inputs on the front panel may not be changed once the software has begun its operation.</li>
	<li>In the Save reference spectra window, select Yes if the reference spectra will be saved or No if they will not.</li>
	<li>In the Set condition flow rates window, select up to 30 desired flow rate configurations to test, leaving all unused syringe inputs blank.</li>
	<li>Select OK and allow the system to run until all desired conditions have been sampled; the system shuts down on its own. If the system needs to be stopped for any reason, select the Stop early button and allow the process to shut down. 
	CAUTION: Using the Abort button on the top left of the interface will not allow the system to shut down pumps or light sources, potentially damaging equipment and/or posing a significant health risk via UV light exposure.</li>
</ol>
4. Pathlength Corrections
<ol>
	<li>To obtain the pathlength correction correlation for each port, first inject a stable solution of perovskites dispersed in toluene into the reactor segment until the reactor tubing is uniformly filled.</li>
	<li>Run the automated sampling process on this uniform solution for 4 full passes of the flow cell (see step 3 for the operation procedure).</li>
	<li>Apply baseline corrections for both fluorescence and absorption spectra, then average overall for the passes by port location. Normalize all curves in reference to the wavelength intensities at 455 nm and 485 nm for absorption and fluorescence respectively (see Figure 4).</li>
	<li>Use the normalization factor calculated at each port to proportionally scale the curves of all subsequent spectra.</li>
</ol>

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North Carolina State University has filed a provisional patent (#62/558,155) on the discussed microfluidic platform.

Automated sampling system: The autonomous operation of the screening platform is carried out with a central control finite state machine. Movement between these states occurs sequentially with multiple recursive segments to allow for operation across a varying number of sampling conditions. The general system controls can be divided into 3 core stages. First, the system begins with an initialization step, which establishes communications through each USB-controlled component, automatically defines file s...

The advent of semiconductor nanocrystals, particularly quantum dots, has driven significant advancements in electronic materials research and manufacturing. For example, quantum dot LEDs1 have already been implemented in commercially available &#34;QLED&#34; displays. More recently among this class of semiconductors, perovskites have sparked substantial interest and research towards high-efficiency and low-cost PV technologies. Since the first demonstration of a perovskite-based PV in 2009,2 the lab-scale power conversion efficiency of perovskite-based solar cells has increased at a rate unparalleled by any PV technology in history.3,4 In addition to the driving interest in perovskite-based PVs, a variety of recent methods describing the facile colloidal synthesis of perovskite nanocrystals have created the opportunity for low-cost, solution-phase processing of perovskite QDs in commercial electronics.5,6,7,8,9,10,11,12,13,14
In the effort towards large-scale nanomanufacturing of colloidal perovskite QDs, a better fundamental understanding of the nanocrystal growth pathways and an effective control of the reaction conditions must first be developed. However, existing studies of these processes have traditionally relied on flask-based approaches. Batch synthesis strategies present a variety of inherent limitations in terms of material characterization and production, but most significantly, flask-based techniques are highly inefficient in screening time and precursor consumption, and demonstrate flask size-dependent mass transfer properties, which inhibit the synthesis consistency.15 To effectively study the growth pathways of colloidal semiconductor nanocrystals across the large variety of reported syntheses procedures and within the broad relevant sample space, a more efficient screening technique is required. Over the past two decades, a range of microfluidic strategies have been developed for studies of colloidal nanocrystals leveraging the substantially lower chemical consumption, the accessibility of high-throughput screening methods, and the potential for a process control implementation in continuous synthesis systems.12,16,17,18,19,20
In this work, we report the design and development of an automated microfluidic platform for the high-throughput in situ studies of colloidal semiconductor nanocrystals. A novel translating flow cell, a highly modular design, and the integration of off-the-shelf tubular reactors and fluidic connections form a unique and adaptable reconfigurable platform with direct applications in the discovery, screening, and optimization of colloidal nanocrystals. Capitalizing on the translational capability of our detection technique (i.e., a three-port flow cell), for the first time, we demonstrate the systematic decoupling of mixing and reaction timescales, while simultaneously improving the sampling efficiency and collection rates over traditional stationary flow cell approaches. The utilization of this platform enables the high-throughput and precise band-gap engineering of colloidal nanocrystal syntheses towards continuous nanomanufacturing strategies.

<table><tbody><tr><td>Toluene</td><td>Fisher Scientific</td><td>AC364410010</td><td>99.85% extra over molecular sieves</td></tr><tr><td>Oleic acid</td><td>Sigma Aldrich</td><td>364525&amp;nbsp;ALDRICH</td><td>technical grade 90%</td></tr><tr><td>Cesium hydroxide (50 wt% in water)</td><td>Sigma Aldrich</td><td>232041 ALDRICH</td><td>50 wt% in water &gt; 99.9% trace metals</td></tr><tr><td>Lead(II) oxide</td><td>Sigma Aldrich</td><td>211907 SIGMA-ALDRICH</td><td>&gt; 99.9% trace metals basis</td></tr><tr><td>Tetraoctylammonium bromide</td><td>Sigma Aldrich</td><td>294136 ALDRICH</td><td>98%</td></tr><tr><td>1/16&quot; OD, 0.04&quot; ID FEP tubing</td><td>MicroSolv</td><td>48410-40</td><td></td></tr><tr><td>1/16&quot; OD, 0.02&quot; ID ETFE tubing</td><td>MicroSolv</td><td>48510-20</td><td></td></tr><tr><td>0.02&quot; thru hole PEEK Tee</td><td>IDEX Health &amp;amp; Science</td><td>P-712</td><td></td></tr><tr><td>1/4-28 ETFE flangeless ferrule for 1/16&quot;</td><td>IDEX Health &amp;amp; Science</td><td>P-200N</td><td></td></tr><tr><td>1/4-28 PEEK flangeless nut for 1/16&quot;</td><td>IDEX Health &amp;amp; Science</td><td>P-230</td><td></td></tr><tr><td>4-way PEEK L-valve</td><td>IDEX Health &amp;amp; Science</td><td>V-100L</td><td></td></tr><tr><td>Syringe pump</td><td>Harvard Apparatus</td><td>70-3007</td><td></td></tr><tr><td>8 mL stainless steel syringe</td><td>Harvard Apparatus</td><td>70-2267</td><td></td></tr><tr><td>25 mL glass syringe</td><td>Scientific Glass Engineering</td><td>25MDF-LL-GT</td><td></td></tr><tr><td>Optical breadboard</td><td>ThorLabs</td><td>MB1224</td><td></td></tr><tr><td>300 mm translation stage</td><td>ThorLabs</td><td>LTS300</td><td></td></tr><tr><td>Optical post</td><td>ThorLabs</td><td>TR2-4</td><td>TR2, TR3, or TR4</td></tr><tr><td>Optical post holder</td><td>ThorLabs</td><td>PH4-6</td><td>PH4 or PH6</td></tr><tr><td>365 nm LED</td><td>ThorLabs</td><td>M365LP1</td><td></td></tr><tr><td>LED driver</td><td>ThorLabs</td><td>LEDD1B</td><td></td></tr><tr><td>600 micron patch cord</td><td>Ocean Optics</td><td>QP600-1-SR</td><td></td></tr><tr><td>Deuterium-halogen light source</td><td>Ocean Optics</td><td>DH-2000-BAL</td><td></td></tr><tr><td>Miniature spectrometer</td><td>Ocean Optics</td><td>FLAME-S-XR1-ES</td><td></td></tr><tr><td>Multifuction I/O device (DAQ)</td><td>National Instruments</td><td>USB-6001</td><td></td></tr><tr><td>Virtual Instrument Software</td><td>National Instruments</td><td>LabVIEW 2015 SP1</td><td></td></tr></tbody></table>

a modular microfluidic technology for systematic studies of colloidal semiconductor nanocrystals

Colloidal semiconductor nanocrystals, known as quantum dots (QDs), are a rapidly growing class of materials in commercial electronics, such as light emitting diodes (LEDs) and photovoltaics (PVs). Among this material group, inorganic/organic perovskites have demonstrated significant improvement and potential towards high-efficiency, low-cost PV fabrication due to their high charge carrier mobilities and lifetimes. Despite the opportunities for perovskite QDs in large-scale PV and LED applications, the lack of fundamental and comprehensive understanding of their growth pathways has inhibited their adaptation within continuous nanomanufacturing strategies. Traditional flask-based screening approaches are generally expensive, labor-intensive, and imprecise for effectively characterizing the broad parameter space and synthesis variety relevant to colloidal QD reactions. In this work, a fully autonomous microfluidic platform is developed to systematically study the large parameter space associated with the colloidal synthesis of nanocrystals in a continuous flow format. Through the application of a novel translating three-port flow cell and modular reactor extension units, the system may rapidly collect fluorescence and absorption spectra across reactor lengths ranging 3 - 196 cm. The adjustable reactor length not only decouples the residence time from the velocity-dependent mass transfer, it also substantially improves the sampling rates and chemical consumption due to the characterization of 40 unique spectra within a single equilibrated system. Sample rates may reach up to 30,000 unique spectra per day, and the conditions cover 4 orders of magnitude in residence times ranging 100 ms - 17 min. Further applications of this system would substantially improve the rate and precision of the material discovery and screening in future studies. Detailed within this report are the system materials and assembly protocols with a general description of the automated sampling software and offline data processing.

Sample spectra:&#160;Utilizing the discussed microfluidic platform, the nucleation and growth stages of colloidal semiconductor nanocrystals at the synthesis temperature can be directly studied by monitoring the time-evolution of the absorption and fluorescence spectra of the formed nanocrystals under uniform mixing conditions. Figure 5A shows an example set of spectra obtained within a single pass of the three-port flow cell...

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A Modular Microfluidic Technology for Systematic Studies of Colloidal Semiconductor Nanocrystals

Detailed herein are the operation and assembly protocols of a modular microfluidic screening platform for the systematic characterization of colloidal semiconductor nanocrystal syntheses. Through fully adjustable system arrangements, highly efficient spectra collection may be carried out across 4 orders of magnitude reaction time scales within a mass transfer-controlled sampling space.

Colloidal semiconductor nanocrystals, known as quantum dots (QDs), are a rapidly growing class of materials in commercial electronics, such as light ...

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Research

JoVE Journal

Engineering

9.5K Views.  North Carolina State University. Detailed herein are the operation and assembly protocols of a modular microfluidic screening platform for the systematic characterization of colloidal semiconductor nanocrystal syntheses. Through fully adjustable system arrangements, highly efficient spectra collection may be carried out across 4 orders of magnitude reaction time scales within a mass transfer-controlled sampling space.

Video: A Modular Microfluidic Technology for Systematic Studies of Colloidal Semiconductor Nanocrystals

Fluorescence detection methods for microfluidic droplet platforms

The development of microfluidic platforms for performing chemistry and biology has in large part been driven by a range of potential benefits that accompany system miniaturisation. Advantages include the ability to efficiently process nano- to femoto- liter volumes of sample, facile integration of functional components, an intrinsic predisposition towards large-scale multiplexing, enhanced analytical throughput, improved control and reduced instrumental footprints.1
In recent years much interest has focussed on the development of droplet-based (or segmented flow) microfluidic systems and their potential as platforms in high-throughput experimentation.2-4 Here water-in-oil emulsions are made to spontaneously form in microfluidic channels as a result of capillary instabilities between the two immiscible phases. Importantly, microdroplets of precisely defined volumes and compositions can be generated at frequencies of several kHz. Furthermore, by encapsulating reagents of interest within isolated compartments separated by a continuous immiscible phase, both sample cross-talk and dispersion (diffusion- and Taylor-based) can be eliminated, which leads to minimal cross-contamination and the ability to time analytical processes with great accuracy. Additionally, since there is no contact between the contents of the droplets and the channel walls (which are wetted by the continuous phase) absorption and loss of reagents on the channel walls is prevented.
Once droplets of this kind have been generated and processed, it is necessary to extract the required analytical information. In this respect the detection method of choice should be rapid, provide high-sensitivity and low limits of detection, be applicable to a range of molecular species, be non-destructive and be able to be integrated with microfluidic devices in a facile manner. To address this need we have developed a suite of experimental tools and protocols that enable the extraction of large amounts of photophysical information from small-volume environments, and are applicable to the analysis of a wide range of physical, chemical and biological parameters. Herein two examples of these methods are presented and applied to the detection of single cells and the mapping of mixing processes inside picoliter-volume droplets. We report the entire experimental process including microfluidic chip fabrication, the optical setup and the process of droplet generation and detection.

Droplet-based microfluidic platforms are promising candidates for high throughput experimentation since they are able to generate picoliter, self-compartmentalized vessels inexpensively at kHz rates. Through integration with fast, sensitive and high resolution fluorescence spectroscopic methods, the large amounts of information generated within these systems can be efficiently extracted, harnessed and utilized.

The development of microfluidic platforms for performing chemistry and biology has in large part been driven by a range of potential benefits that ...

Bioengineering

Microfluidic Chips Controlled with Elastomeric Microvalve Arrays

Miniaturized microfluidic systems provide simple and effective solutions for low-cost point-of-care diagnostics and high-throughput biomedical assays. Robust flow control and precise fluidic volumes are two critical requirements for these applications. We have developed microfluidic chips featuring elastomeric polydimethylsiloxane (PDMS) microvalve arrays that: 1) need no extra energy source to close the fluidic path, hence the loaded device is highly portable; and 2) allow for microfabricating deep (up to 1 mm) channels with vertical sidewalls and resulting in very precise features.

The PDMS microvalves-based devices consist of three layers: a fluidic layer containing fluidic paths and microchambers of various sizes, a control layer containing the microchannels necessary to actuate the fluidic path with microvalves, and a middle thin PDMS membrane that is bound to the control layer. Fluidic layer and control layers are made by replica molding of PDMS from SU-8 photoresist masters, and the thin PDMS membrane is made by spinning PDMS at specified heights. The control layer is bonded to the thin PDMS membrane after oxygen activation of both, and then assembled with the fluidic layer. The microvalves are closed at rest and can be opened by applying negative pressure (e.g., house vacuum). Microvalve closure and opening are automated via solenoid valves controlled by computer software.

Here, we demonstrate two microvalve-based microfluidic chips for two different applications. The first chip allows for storing and mixing precise sub-nanoliter volumes of aqueous solutions at various mixing ratios. The second chip allows for computer-controlled perfusion of microfluidic cell cultures.

The devices are easy to fabricate and simple to control. Due to the biocompatibility of PDMS, these microchips could have broad applications in miniaturized diagnostic assays as well as basic cell biology studies.

We demonstrate protocols for manufacturing and automating elastomeric polydimethylsiloxane (PDMS)-based microvalve arrays that need no extra energy to close and feature photolithographically defined precise volumes. A parallel subnanoliter-volume mixer and an integrated microfluidic perfusion system are presented.

Miniaturized microfluidic systems provide simple and effective solutions for low-cost point-of-care diagnostics and high-throughput biomedical assays.  ...

Biology

Creating Sub-50 Nm Nanofluidic Junctions in PDMS Microfluidic Chip via Self-Assembly Process of Colloidal Particles

Polydimethylsiloxane (PDMS) is the prevailing building material to make microfluidic devices due to its ease of molding and bonding as well as its transparency. Due to the softness of the PDMS material, however, it is challenging to use PDMS for building nanochannels. The channels tend to collapse easily during plasma bonding. In this paper, we present an evaporation-driven self-assembly method of silica colloidal nanoparticles to create nanofluidic junctions with sub-50 nm pores between two microchannels. The pore size as well as the surface charge of the nanofluidic junction is tunable simply by changing the colloidal silica bead size and surface functionalization outside of the assembled microfluidic device in a vial before the self-assembly process. Using the self-assembly of nanoparticles with a bead size of 300 nm, 500 nm, and 900 nm, it was possible to fabricate a porous membrane with a pore size of ~45 nm, ~75 nm and ~135 nm, respectively. Under electrical potential, this nanoporous membrane initiated ion concentration polarization (ICP) acting as a cation-selective membrane to concentrate DNA by ~1,700 times within 15 min. This non-lithographic nanofabrication process opens up a new opportunity to build a tunable nanofluidic junction for the study of nanoscale transport processes of ions and molecules inside a PDMS microfluidic chip.

We propose a simple self-assembly technique of silica colloidal nanoparticles to create a nanofluidic junction between two microchannels in polydimethylsiloxane (PDMS). Using this technique, a nanoporous bead membrane with a pore size down to ~45 nm was built inside a microchannel and applied to electrokinetic preconcentration of DNA samples.

Polydimethylsiloxane (PDMS) is the prevailing building material to make microfluidic devices due to its ease of molding and bonding as well as its ...

Millifluidics for Chemical Synthesis and Time-resolved Mechanistic Studies

Procedures utilizing millifluidic devices for chemical synthesis and time-resolved mechanistic studies are described by taking three examples. In the first, synthesis of ultra-small copper nanoclusters is described. The second example provides their utility for investigating time resolved kinetics of chemical reactions by analyzing gold nanoparticle formation using in situ X-ray absorption spectroscopy. The final example demonstrates continuous flow catalysis of reactions inside millifluidic channel coated with nanostructured catalyst.

Millifluidic devices are utilized for controlled synthesis of nanomaterials, time-resolved analysis of reaction mechanisms and continuous flow catalysis.

Procedures utilizing millifluidic devices for chemical synthesis and time-resolved mechanistic studies are described by taking three examples. In the ...

Microfluidic Chips for In Situ Crystal X-ray Diffraction and In Situ Dynamic Light Scattering for Serial Crystallography

This protocol describes fabricating microfluidic devices with low X-ray background optimized for goniometer based fixed target serial crystallography. The devices are patterned from epoxy glue using soft lithography and are suitable for in situ X-ray diffraction experiments at room temperature. The sample wells are lidded on both sides with polymeric polyimide foil windows that allow diffraction data collection with low X-ray background. This fabrication method is undemanding and inexpensive. After the sourcing of a SU-8 master wafer, all fabrication can be completed outside of a cleanroom in a typical research lab environment. The chip design and fabrication protocol utilize capillary valving to microfluidically split an aqueous reaction into defined nanoliter sized droplets. This loading mechanism avoids the sample loss from channel dead-volume and can easily be performed manually without using pumps or other equipment for fluid actuation. We describe how isolated nanoliter sized drops of protein solution can be monitored in situ by dynamic light scattering to control protein crystal nucleation and growth. After suitable crystals are grown, complete X-ray diffraction datasets can be collected using goniometer based in situ fixed target serial X-ray crystallography at room temperature. The protocol provides custom scripts to process diffraction datasets using a suite of software tools to solve and refine the protein crystal structure. This approach avoids the artefacts possibly induced during cryo-preservation or manual crystal handling in conventional crystallography experiments. We present and compare three protein structures that were solved using small crystals with dimensions of approximately 10-20 &#181;m grown in chip. By crystallizing and diffracting in situ, handling and hence mechanical disturbances of fragile crystals is minimized. The protocol details how to fabricate a custom X-ray transparent microfluidic chip suitable for in situ serial crystallography. As almost every crystal can be used for diffraction data collection, these microfluidic chips are a very efficient crystal delivery method.

Microfluidic Chips for In Situ Crystal X-ray Diffraction and In Situ Dynamic Light Scattering for Serial Crystallography

This protocol describes in detail how to fabricate and operate microfluidic devices for X-ray diffraction data collection at room temperature. Additionally, it describes how to monitor protein crystallization by dynamic light scattering and how to process and analyze obtained diffraction data.

This protocol describes fabricating microfluidic devices with low X-ray background optimized for goniometer based fixed target serial crystallography. The ...

Chemistry

A Microfluidic Platform for Precision Small-volume Sample Processing and Its Use to Size Separate Biological Particles with an Acoustic Microdevice

A major advantage of microfluidic devices is the ability to manipulate small sample volumes, thus reducing reagent waste and preserving precious sample. However, to achieve robust sample manipulation it is necessary to address device integration with the macroscale environment. To realize repeatable, sensitive particle separation with microfluidic devices, this protocol presents a complete automated and integrated microfluidic platform that enables precise processing of 0.15&#8211;1.5 ml samples using microfluidic devices. Important aspects of this system include modular device layout and robust fixtures resulting in reliable and flexible world to chip connections, and fully-automated fluid handling which accomplishes closed-loop sample collection, system cleaning and priming steps to ensure repeatable operation. Different microfluidic devices can be used interchangeably with this architecture. Here we incorporate an acoustofluidic device, detail its characterization, performance optimization, and demonstrate its use for size-separation of biological samples. By using real-time feedback during separation experiments, sample collection is optimized to conserve and concentrate sample. Although requiring the integration of multiple pieces of equipment, advantages of this architecture include the ability to process unknown samples with no additional system optimization, ease of device replacement, and precise, robust sample processing.

This protocol describes a system architecture for performing automated small volume (0.15&#8211;1.5 ml) particle separations using a microfluidic device, and discusses methods to optimize acoustofluidic device performance and operation.

A major advantage of microfluidic devices is the ability to manipulate small sample volumes, thus reducing reagent waste and preserving precious sample. ...

Window on a Microworld: Simple Microfluidic Systems for Studying Microbial Transport in Porous Media

Microbial growth and transport in porous media have important implications for the quality of groundwater and surface water, the recycling of nutrients in the environment, as well as directly for the transmission of pathogens to drinking water supplies. Natural porous media is composed of an intricate physical topology, varied surface chemistries, dynamic gradients of nutrients and electron acceptors, and a patchy distribution of microbes. These features vary substantially over a length scale of microns, making the results of macro-scale investigations of microbial transport difficult to interpret, and the validation of mechanistic models challenging. Here we demonstrate how simple microfluidic devices can be used to visualize microbial interactions with micro-structured habitats, to identify key processes influencing the observed phenomena, and to systematically validate predictive models. Simple, easy-to-use flow cells were constructed out of the transparent, biocompatible and oxygen-permeable material poly(dimethyl siloxane). Standard methods of photolithography were used to make micro-structured masters, and replica molding was used to cast micro-structured flow cells from the masters. The physical design of the flow cell chamber is adaptable to the experimental requirements: microchannels can vary from simple linear connections to complex topologies with feature sizes as small as 2 &mu;m. Our modular EcoChip flow cell array features dozens of identical chambers and flow control by a gravity-driven flow module. We demonstrate that through use of EcoChip devices, physical structures and pressure heads can be held constant or varied systematically while the influence of surface chemistry, fluid properties, or the characteristics of the microbial population is investigated. Through transport experiments using a non-pathogenic, green fluorescent protein-expressing Vibrio bacterial strain, we illustrate the importance of habitat structure, flow conditions, and inoculums size on fundamental transport phenomena, and with real-time particle-scale observations, demonstrate that microfluidics offer a compelling view of a hidden world.

Microfluidic devices can be used to visualize complex natural processes in real time and at the appropriate physical scales. We have developed a simple microfluidic device that mimics key features of natural porous media for studying growth and transport of bacteria in the subsurface.

Microbial growth and transport in porous media have important implications for the quality of groundwater and surface water, the recycling of nutrients in ...

Patterning of Microorganisms and Microparticles through Sequential Capillarity-assisted Assembly

Controlled patterning of microorganisms into defined spatial arrangements offers unique possibilities for a broad range of biological applications, including studies of microbial physiology and interactions. At the simplest level, accurate spatial patterning of microorganisms would enable reliable, long-term imaging of large numbers of individual cells and transform the ability to quantitatively study distance-dependent microbe-microbe interactions. More uniquely, coupling accurate spatial patterning and full control over environmental conditions, as offered by microfluidic technology, would provide a powerful and versatile platform for single-cell studies in microbial ecology. 
This paper presents a microfluidic platform to produce versatile and user-defined patterns of microorganisms within a microfluidic channel, allowing complete optical access for long-term, high-throughput monitoring. This new microfluidic technology is based on capillarity-assisted particle assembly and exploits the capillary forces arising from the controlled motion of an evaporating suspension inside a microfluidic channel to deposit individual microsized objects in an array of traps microfabricated onto a polydimethylsiloxane (PDMS) substrate. Sequential depositions generate the desired spatial layout of single or multiple types of micro-sized objects, dictated solely by the geometry of the traps and the filling sequence. 
The platform has been calibrated using colloidal particles of different dimensions and materials: it has proven to be a powerful tool to generate diverse colloidal patterns and perform surface functionalization of trapped particles. Furthermore, the platform was tested on microbial cells, using Escherichia coli cells as a model bacterium. Thousands of individual cells were patterned on the surface, and their growth was monitored over time. In this platform, the coupling of single-cell deposition and microfluidic technology allows both geometric patterning of microorganisms and precise control of environmental conditions. It thus opens a window into the physiology of single microbes and the ecology of microbe-microbe interactions, as shown by preliminary experiments.

We present a technology that uses capillarity-assisted assembly in a microfluidic platform to pattern micro-sized objects suspended in a liquid, such as bacteria and colloids, into prescribed arrays on a polydimethylsiloxane substrate.

Controlled patterning of microorganisms into defined spatial arrangements offers unique possibilities for a broad range of biological applications, ...

Generation of Dynamical Environmental Conditions using a High-Throughput Microfluidic Device

Mimicking in vivo environmental conditions is crucial for in vitro studies on complex life machinery. However, current techniques targeting live cells and organs are either highly expensive, like robotics, or lack nanoliter volume and millisecond time accuracy in liquid manipulation. We herein present the design and fabrication of a microfluidic system, which consists of 1,500 culture units, an array of enhanced peristaltic pumps and an on-site mixing modulus. To demonstrate the capacities of the microfluidic device, neural stem cell (NSC) spheres are maintained in the proposed system. We observed that when the NSC sphere is exposed to CXCL in day 1 and EGF in day 2, the round-shaped conformation is well maintained. Variation in the input order of 6 drugs causes morphological changes to the NSC sphere and the expression level representative marker for NSC stemness (i.e., Hes5 and Dcx). These results indicate that dynamic and complex environmental conditions have great effects on NSC differentiation and self-renewal, and the proposed microfluidic device is a suitable platform for high throughput studies on the complex life machinery.

We present a microfluidic system for high throughput studies on complex life machinery, which consists of 1500 culture units, an array of enhanced peristaltic pumps and an on-site mixing modulus. The microfluidic chip allows for the analysis of the highly complex and dynamic micro-environmental conditions in vivo.

Mimicking in vivo environmental conditions is crucial for in vitro studies on complex life machinery. However, current techniques targeting live cells and ...

Setup of a Microfluidic Device for Combinatorial Plug  Production

Bilayer Microfluidic Device for Combinatorial Plug Production

Droplet microfluidics is a versatile tool that allows the execution of a large number of reactions in chemically distinct nanoliter compartments. Such systems have been used to encapsulate a variety of biochemical reactions - from incubation of single cells to implementation of PCR reactions, from genomics to chemical synthesis. Coupling the microfluidic channels with regulatory valves allows control over their opening and closing, thereby enabling the rapid production of large-scale combinatorial libraries consisting of a population of droplets with unique compositions. In this paper, protocols for the fabrication and operation of a pressure-driven, PDMS-based bilayer microfluidic device that can be utilized to generate combinatorial libraries of water-in-oil emulsions called plugs are presented. By incorporating software programs and microfluidic hardware, the flow of desired fluids in the device can be controlled and manipulated to generate combinatorial plug libraries and to control the composition and quantity of constituent plug populations. These protocols will expedite the process of generating combinatorial screens, particularly to study drug response in cells from cancer patient biopsies.

Author Spotlight: Integrating Computational and Experimental Approaches in Precision Oncology

The fabrication of a polydimethylsiloxane (PDMS)-based bilayer device for the production of combinatorial libraries in water-in-oil emulsions (plugs) is presented here. The necessary hardware and software required to automate plug production are detailed in the protocol, and the production of a quantitative library of fluorescent plugs is also demonstrated.

Droplet microfluidics is a versatile tool that allows the execution of a large number of reactions in chemically distinct nanoliter compartments. Such ...

A Modular Microfluidic Technology for Systematic Studies of Colloidal Semiconductor Nanocrystals

Summary

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Chapters in this video

Fluorescence detection methods for microfluidic droplet platforms

Microfluidic Chips Controlled with Elastomeric Microvalve Arrays

Creating Sub-50 Nm Nanofluidic Junctions in PDMS Microfluidic Chip via Self-Assembly Process of Colloidal Particles

Millifluidics for Chemical Synthesis and Time-resolved Mechanistic Studies

Microfluidic Chips for In Situ Crystal X-ray Diffraction and In Situ Dynamic Light Scattering for Serial Crystallography

A Microfluidic Platform for Precision Small-volume Sample Processing and Its Use to Size Separate Biological Particles with an Acoustic Microdevice

Window on a Microworld: Simple Microfluidic Systems for Studying Microbial Transport in Porous Media

Patterning of Microorganisms and Microparticles through Sequential Capillarity-assisted Assembly

Generation of Dynamical Environmental Conditions using a High-Throughput Microfluidic Device

Bilayer Microfluidic Device for Combinatorial Plug Production