Aindrila Mukhopadhyay

Physical Biosciences Division, Lawrence Berkeley National Laboratory

Affiliated withLawrence Berkeley National Laboratory

Research Area

Biology

Biography

Aindrila Mukhopadhyay has not added Biography.
If you are Aindrila Mukhopadhyay and would like to personalize this page please email our Author Liaison for assistance.

JoVE Journal Publications

Article Total : 1	Year
Publication title	2014

Other Publications

Article	Year
Integrating input from multiple signals: the VirA/VirG two-component system of Agrobacterium tumefaciens. Chembiochem : a European journal of chemical biology\| PubMed ID: 15515087	2004
Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. Journal of bacteriology\| PubMed ID: 16707698	2006
Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics. Briefings in functional genomics & proteomics\| PubMed ID: 16772278	2006
Constitutive activation of two-component response regulators: characterization of VirG activation in Agrobacterium tumefaciens. Journal of bacteriology\| PubMed ID: 16816192	2006
Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron re... Journal of bacteriology\| PubMed ID: 17114264	2007
Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough. Journal of bacteriology\| PubMed ID: 17545284	2007
Isotopomer distributions in amino acids from a highly expressed protein as a proxy for those from total protein. Analytical chemistry\| PubMed ID: 18179240	2008
Post-translational modifications of Desulfovibrio vulgaris Hildenborough sulfate reduction pathway proteins. Journal of proteome research\| PubMed ID: 18416566	2008
Biofuel alternatives to ethanol: pumping the microbial well. Trends in biotechnology\| PubMed ID: 18471913	2008
Importance of systems biology in engineering microbes for biofuel production. Current opinion in biotechnology\| PubMed ID: 18515068	2008
Overcoming the anaerobic hurdle in phenotypic microarrays: generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough. Journal of microbiological methods\| PubMed ID: 18996155	2009
Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation. Nucleic acids research\| PubMed ID: 19293273	2009
Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein. Biotechnology progress\| PubMed ID: 19899123	2010
A rapid and inexpensive labeling method for microarray gene expression analysis. BMC biotechnology\| PubMed ID: 19939278	2009
Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation. Applied and environmental microbiology\| PubMed ID: 20038696	2010
Functional genomic study of exogenous n-butanol stress in Escherichia coli. Applied and environmental microbiology\| PubMed ID: 20118358	2010
4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20194787	2010
Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough. Environmental microbiology\| PubMed ID: 20482586	2010
A model for improving microbial biofuel production using a synthetic feedback loop. Systems and synthetic biology\| PubMed ID: 20805930	2010
Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Journal of proteome research\| PubMed ID: 21166475	2011
Targeted proteomics for metabolic pathway optimization: application to terpene production. Metabolic engineering\| PubMed ID: 21215324	2011
The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis. The Plant cell\| PubMed ID: 21478444	2011
Engineering microbial biofuel tolerance and export using efflux pumps. Molecular systems biology\| PubMed ID: 21556065	2011
How sulphate-reducing microorganisms cope with stress: lessons from systems biology. Nature reviews. Microbiology\| PubMed ID: 21572460	2011
Identification and microbial production of a terpene-based advanced biofuel. Nature communications\| PubMed ID: 21952217	2011
Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium. Genome biology\| PubMed ID: 21992415	2011
Modular engineering of L-tyrosine production in Escherichia coli. Applied and environmental microbiology\| PubMed ID: 22020510	2012
Arabidopsis Deficient in Cutin Ferulate encodes a transferase required for feruloylation of ω-hydroxy fatty acids in cutin polyester. Plant physiology\| PubMed ID: 22158675	2012
Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Plant physiology\| PubMed ID: 22430844	2012
Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification. Plant biotechnology journal\| PubMed ID: 22458713	2012
Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: carbon and energy flow contribute to the distinct biofilm growth state. BMC genomics\| PubMed ID: 22507456	2012
A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels. PloS one\| PubMed ID: 22649505	2012
Functional responses of methanogenic archaea to syntrophic growth. The ISME journal\| PubMed ID: 22739494	2012
Enhancing fatty acid production by the expression of the regulatory transcription factor FadR. Metabolic engineering\| PubMed ID: 23026122	2012
Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution. The ISME journal\| PubMed ID: 23575373	2013
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. The ISME journal\| PubMed ID: 23739051	2013
New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria. Journal of bacteriology\| PubMed ID: 23913324	2013
Engineering dynamic pathway regulation using stress-response promoters. Nature biotechnology\| PubMed ID: 24142050	2013
Exploring the role of CheA3 in Desulfovibrio vulgaris Hildenborough motility. Frontiers in microbiology\| PubMed ID: 24639670	2014
Development of a Native Escherichia coli Induction System for Ionic Liquid Tolerance. PloS one\| PubMed ID: 24983352	2014