Institute of Biochemistry
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DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution.
PLoS genetics Mar, 2009 | Pubmed ID: 19325872
Site-directed mutagenesis by polymerase chain reaction.
Methods in molecular biology (Clifton, N.J.) , 2002 | Pubmed ID: 11768980
Molecular enzymology of the catalytic domains of the Dnmt3a and Dnmt3b DNA methyltransferases.
The Journal of biological chemistry Jun, 2002 | Pubmed ID: 11919202
Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases.
Chembiochem : a European journal of chemical biology Apr, 2002 | Pubmed ID: 11933228
A fluorimetric assay for on-line detection of DNA cleavage by restriction endonucleases.
Journal of biotechnology Jun, 2002 | Pubmed ID: 12039534
The Escherichia coli dam DNA methyltransferase modifies DNA in a highly processive reaction.
Journal of molecular biology Jun, 2002 | Pubmed ID: 12079349
Specificity of DNA triple helix formation analyzed by a FRET assay.
BMC biochemistry , 2002 | Pubmed ID: 12323077
Dnmt3a and Dnmt1 functionally cooperate during de novo methylation of DNA.
European journal of biochemistry / FEBS Oct, 2002 | Pubmed ID: 12383256
Probing the DNA interface of the EcoRV DNA-(adenine-N6)-methyltransferase by site-directed mutagenesis, fluorescence spectroscopy, and UV cross-linking.
Biochemistry Dec, 2002 | Pubmed ID: 12450373
High-throughput purification of polyHis-tagged recombinant fusion proteins.
Methods in molecular biology (Clifton, N.J.) , 2003 | Pubmed ID: 12491887
Detection and analysis of enzymatic DNA methylation of oligonucleotide substrates by matrix-assisted laser desorption ionization time-of-flight mass spectrometry.
Analytical biochemistry Feb, 2003 | Pubmed ID: 12576072
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.
Nucleic acids research Apr, 2003 | Pubmed ID: 12654995
Methylation sensitivity of restriction enzymes interacting with GATC sites.
BioTechniques May, 2003 | Pubmed ID: 12765016
Catalytic mechanism of DNA-(cytosine-C5)-methyltransferases revisited: covalent intermediate formation is not essential for methyl group transfer by the murine Dnmt3a enzyme.
Journal of molecular biology Jun, 2003 | Pubmed ID: 12787669
The human Dnmt2 has residual DNA-(cytosine-C5) methyltransferase activity.
The Journal of biological chemistry Aug, 2003 | Pubmed ID: 12794065
Structural and biochemical characterization of a new Mg(2+) binding site near Tyr94 in the restriction endonuclease PvuII.
Journal of molecular biology Aug, 2003 | Pubmed ID: 12888347
Maintenance of species identity and controlling speciation of bacteria: a new function for restriction/modification systems?
Gene Oct, 2003 | Pubmed ID: 14604787
Chromatin targeting of de novo DNA methyltransferases by the PWWP domain.
The Journal of biological chemistry Jun, 2004 | Pubmed ID: 14998998
Stopped-flow and mutational analysis of base flipping by the Escherichia coli Dam DNA-(adenine-N6)-methyltransferase.
Journal of molecular biology Aug, 2004 | Pubmed ID: 15276835
The Dnmt1 DNA-(cytosine-C5)-methyltransferase methylates DNA processively with high preference for hemimethylated target sites.
The Journal of biological chemistry Nov, 2004 | Pubmed ID: 15339928
Anomalous mobility of polymerase chain reaction products after bisulfite treatment of DNA.
Analytical biochemistry Oct, 2004 | Pubmed ID: 15351297
Mechanism of inhibition of DNA methyltransferases by cytidine analogs in cancer therapy.
Cancer biology & therapy Nov, 2004 | Pubmed ID: 15539938
Mechanism of stimulation of catalytic activity of Dnmt3A and Dnmt3B DNA-(cytosine-C5)-methyltransferases by Dnmt3L.
The Journal of biological chemistry Apr, 2005 | Pubmed ID: 15671018
Profound flanking sequence preference of Dnmt3a and Dnmt3b mammalian DNA methyltransferases shape the human epigenome.
Journal of molecular biology May, 2005 | Pubmed ID: 15854647
Transition from nonspecific to specific DNA interactions along the substrate-recognition pathway of dam methyltransferase.
Cell May, 2005 | Pubmed ID: 15882618
Avidin plate assay system for enzymatic characterization of a histone lysine methyltransferase.
Analytical biochemistry Jul, 2005 | Pubmed ID: 15935324
De novo methylation of nucleosomal DNA by the mammalian Dnmt1 and Dnmt3A DNA methyltransferases.
Biochemistry Jul, 2005 | Pubmed ID: 16026162
Developing a programmed restriction endonuclease for highly specific DNA cleavage.
Nucleic acids research , 2005 | Pubmed ID: 16356926
Mutational analysis of the catalytic domain of the murine Dnmt3a DNA-(cytosine C5)-methyltransferase.
Journal of molecular biology Mar, 2006 | Pubmed ID: 16472822
Accuracy of DNA methylation pattern preservation by the Dnmt1 methyltransferase.
Nucleic acids research , 2006 | Pubmed ID: 16500889
Structure and substrate recognition of the Escherichia coli DNA adenine methyltransferase.
Journal of molecular biology Apr, 2006 | Pubmed ID: 16524590
Mutations in DNA methyltransferase DNMT3B in ICF syndrome affect its regulation by DNMT3L.
Human molecular genetics May, 2006 | Pubmed ID: 16543361
Two substrates are better than one: dual specificities for Dnmt2 methyltransferases.
Trends in biochemical sciences Jun, 2006 | Pubmed ID: 16679017
German human methylome project started.
Cancer research Jul, 2006 | Pubmed ID: 16849590
Chimeric DNA methyltransferases target DNA methylation to specific DNA sequences and repress expression of target genes.
Nucleic acids research , 2007 | Pubmed ID: 17151075
Reversible inactivation of the CG specific SssI DNA (cytosine-C5)-methyltransferase with a photocleavable protecting group.
Chembiochem : a European journal of chemical biology Jan, 2007 | Pubmed ID: 17195251
Application of DNA methyltransferases in targeted DNA methylation.
Applied microbiology and biotechnology Jul, 2007 | Pubmed ID: 17431611
Two alternative conformations of S-adenosyl-L-homocysteine bound to Escherichia coli DNA adenine methyltransferase and the implication of conformational changes in regulating the catalytic cycle.
The Journal of biological chemistry Aug, 2007 | Pubmed ID: 17545164
Deoxyribonucleic acid methyl transferases 3a and 3b associate with the nuclear orphan receptor COUP-TFI during gene activation.
Molecular endocrinology (Baltimore, Md.) Sep, 2007 | Pubmed ID: 17579209
Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation.
Nature Sep, 2007 | Pubmed ID: 17713477
Phosphorylation of serine-515 activates the Mammalian maintenance methyltransferase Dnmt1.
Epigenetics : official journal of the DNA Methylation Society Sep, 2007 | Pubmed ID: 17965600
On the enzymatic properties of Dnmt1: specificity, processivity, mechanism of linear diffusion and allosteric regulation of the enzyme.
Epigenetics : official journal of the DNA Methylation Society Apr-Jun, 2006 | Pubmed ID: 17965604
The M.EcoRV DNA-(adenine N6)-methyltransferase uses DNA bending for recognition of an expanded EcoDam recognition site.
The Journal of biological chemistry Dec, 2007 | Pubmed ID: 17977824
Continuous enzymatic assay for histone lysine methyltransferases.
BioTechniques Nov, 2007 | Pubmed ID: 18072589
Mapping of protein-protein interaction sites by the 'absence of interference' approach.
Journal of molecular biology Feb, 2008 | Pubmed ID: 18191145
Analysis of the substrate specificity of the Dim-5 histone lysine methyltransferase using peptide arrays.
Chemistry & biology Jan, 2008 | Pubmed ID: 18215768
Detection and quantitation of the activity of DNA methyltransferases using a biotin/avidin microplate assay.
Methods in molecular biology (Clifton, N.J.) , 2008 | Pubmed ID: 18287657
Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis.
Nucleic acids research Mar, 2008 | Pubmed ID: 18296484
Cyclical DNA methylation of a transcriptionally active promoter.
Nature Mar, 2008 | Pubmed ID: 18322525
Persistent downregulation of the pancarcinoma-associated epithelial cell adhesion molecule via active intranuclear methylation.
International journal of cancer. Journal international du cancer Jul, 2008 | Pubmed ID: 18398839
Protein lysine methyltransferase G9a acts on non-histone targets.
Nature chemical biology Jun, 2008 | Pubmed ID: 18438403
Human DNMT2 methylates tRNA(Asp) molecules using a DNA methyltransferase-like catalytic mechanism.
RNA (New York, N.Y.) Aug, 2008 | Pubmed ID: 18567810
Putting the pieces together: histone H2B ubiquitylation directly stimulates histone H3K79 methylation.
Chembiochem : a European journal of chemical biology Sep, 2008 | Pubmed ID: 18712750
Reading and writing DNA methylation.
Nature structural & molecular biology Oct, 2008 | Pubmed ID: 18836494
Formation of nucleoprotein filaments by mammalian DNA methyltransferase Dnmt3a in complex with regulator Dnmt3L.
Nucleic acids research Dec, 2008 | Pubmed ID: 18945701
DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.
Methods in molecular biology (Clifton, N.J.) , 2009 | Pubmed ID: 18987815
Impact of 7,8-dihydro-8-oxoguanine on methylation of the CpG site by Dnmt3a.
Biochemistry Feb, 2009 | Pubmed ID: 19161295
Specificity of protein lysine methyltransferases and methods for detection of lysine methylation of non-histone proteins.
Molecular bioSystems Dec, 2008 | Pubmed ID: 19396382
The ankyrin repeat domain of Huntingtin interacting protein 14 contains a surface aromatic cage, a potential site for methyl-lysine binding.
Proteins Aug, 2009 | Pubmed ID: 19434754
On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family.
Journal of molecular biology Oct, 2009 | Pubmed ID: 19682999
Transition from EcoDam to T4Dam DNA recognition mechanism without loss of activity and specificity.
Chembiochem : a European journal of chemical biology Oct, 2009 | Pubmed ID: 19725089
A continuous protein methyltransferase (G9a) assay for enzyme activity measurement and inhibitor screening.
Journal of biomolecular screening Oct, 2009 | Pubmed ID: 19734436
Changing the DNA recognition specificity of the EcoDam DNA-(adenine-N6)-methyltransferase by directed evolution.
Journal of molecular biology Jan, 2010 | Pubmed ID: 19766657
New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses.
BioTechniques Sep, 2009 | Pubmed ID: 19852764
Non-imprinted allele-specific DNA methylation on human autosomes.
Genome biology , 2009 | Pubmed ID: 19958531
Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail.
Nucleic acids research Jul, 2010 | Pubmed ID: 20223770
BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences.
BMC bioinformatics , 2010 | Pubmed ID: 20459626
Molecular biology. Phylogeny of methylomes.
Science (New York, N.Y.) May, 2010 | Pubmed ID: 20466912
The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation.
The Journal of biological chemistry Aug, 2010 | Pubmed ID: 20547484
Silencing of gene expression by targeted DNA methylation: concepts and approaches.
Methods in molecular biology (Clifton, N.J.) , 2010 | Pubmed ID: 20680833
Mechanistic insights on the inhibition of c5 DNA methyltransferases by zebularine.
PloS one , 2010 | Pubmed ID: 20808780
Detailed specificity analysis of antibodies binding to modified histone tails with peptide arrays.
Epigenetics : official journal of the DNA Methylation Society Feb, 2011 | Pubmed ID: 20962581
Molecular epigenetics: connecting human biology and disease with little marks.
Chembiochem : a European journal of chemical biology Jan, 2011 | Pubmed ID: 21243707
Structure and function of mammalian DNA methyltransferases.
Chembiochem : a European journal of chemical biology Jan, 2011 | Pubmed ID: 21243710
Specificity analysis-based identification of new methylation targets of the SET7/9 protein lysine methyltransferase.
Chemistry & biology Jan, 2011 | Pubmed ID: 21276944
Approaches to enzyme and substrate design of the murine Dnmt3a DNA methyltransferase.
Chembiochem : a European journal of chemical biology Jul, 2011 | Pubmed ID: 21400651
The ATRX-ADD domain binds to H3 tail peptides and reads the combined methylation state of K4 and K9.
Human molecular genetics Jun, 2011 | Pubmed ID: 21421568
Auto-methylation of the mouse DNA-(cytosine C5)-methyltransferase Dnmt3a at its active site cysteine residue.
The FEBS journal Jun, 2011 | Pubmed ID: 21481189
The inhibition of the mammalian DNA methyltransferase 3a (Dnmt3a) by dietary black tea and coffee polyphenols.
BMC biochemistry , 2011 | Pubmed ID: 21510884
Oligomerization and binding of the Dnmt3a DNA methyltransferase to parallel DNA molecules: heterochromatic localization and role of Dnmt3L.
The Journal of biological chemistry Jul, 2011 | Pubmed ID: 21566127
Histone tails regulate DNA methylation by allosterically activating de novo methyltransferase.
Cell research Aug, 2011 | Pubmed ID: 21606950
C5-DNA methyltransferase inhibitors: from screening to effects on zebrafish embryo development.
Chembiochem : a European journal of chemical biology Jun, 2011 | Pubmed ID: 21633996
Application of Celluspots peptide arrays for the analysis of the binding specificity of epigenetic reading domains to modified histone tails.
BMC biochemistry , 2011 | Pubmed ID: 21884582
DNA methyltransferase assays.
Methods in molecular biology (Clifton, N.J.) , 2011 | Pubmed ID: 21913079
The Caulobacter crescentus DNA-(adenine-N6)-methyltransferase CcrM methylates DNA in a distributive manner.
Nucleic acids research Feb, 2012 | Pubmed ID: 21926159
Function and disruption of DNA methyltransferase 3a cooperative DNA binding and nucleoprotein filament formation.
Nucleic acids research Jan, 2012 | Pubmed ID: 21926161
Using the fluorescence decay of 2-aminopurine to investigate conformational change in the recognition sequence of the EcoRV DNA-(adenine-N6)-methyltransferase on enzyme binding.
Biophysical chemistry Jan, 2012 | Pubmed ID: 21962489
Burning off DNA methylation: new evidence for oxygen-dependent DNA demethylation.
Chembiochem : a European journal of chemical biology Nov, 2011 | Pubmed ID: 21998074
Epigenetics Europe conference. Munich, Germany, 8-9 September 2011.
Epigenomics Dec, 2011 | Pubmed ID: 22126289
On the evolutionary origin of eukaryotic DNA methyltransferases and Dnmt2.
PloS one , 2011 | Pubmed ID: 22140515
Rapid synthesis of new DNMT inhibitors derivatives of procainamide.
Chembiochem : a European journal of chemical biology Jan, 2012 | Pubmed ID: 22170584
A fluorescence-based supramolecular tandem assay for monitoring lysine methyltransferase activity in homogeneous solution.
Chemistry (Weinheim an der Bergstrasse, Germany) Mar, 2012 | Pubmed ID: 22367964
The SET8 H4K20 protein lysine methyltransferase has a long recognition sequence covering seven amino acid residues.
Biochimie Nov, 2012 | Pubmed ID: 22583696
Mapping the tRNA binding site on the surface of human DNMT2 methyltransferase.
Biochemistry Jun, 2012 | Pubmed ID: 22591353
Specificity of Dnmt1 for methylation of hemimethylated CpG sites resides in its catalytic domain.
Chemistry & biology May, 2012 | Pubmed ID: 22633409
DNA interaction of the CcrM DNA methyltransferase: a mutational and modeling study.
Chembiochem : a European journal of chemical biology Jun, 2012 | Pubmed ID: 22639453
Mechanistic details of the DNA recognition by the Dnmt1 DNA methyltransferase.
FEBS letters Jun, 2012 | Pubmed ID: 22641038
Identification of ICAD-derived peptides capable of inhibiting caspase-activated DNase.
The FEBS journal Aug, 2012 | Pubmed ID: 22727028
DNA methyltransferase inhibitors in cancer: a chemical and therapeutic patent overview and selected clinical studies.
Expert opinion on therapeutic patents Dec, 2012 | Pubmed ID: 23033952
Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling.
Nucleic acids research Dec, 2012 | Pubmed ID: 23074192
Targeted methylation and gene silencing of VEGF-A in human cells by using a designed Dnmt3a-Dnmt3L single-chain fusion protein with increased DNA methylation activity.
Journal of molecular biology Feb, 2013 | Pubmed ID: 23220192
Identification of novel inhibitors of DNA methylation by screening of a chemical library.
ACS chemical biology Mar, 2013 | Pubmed ID: 23294304
Oxygen, epigenetic signaling, and the evolution of early life.
Trends in biochemical sciences Apr, 2013 | Pubmed ID: 23454078
Multimerization of the dnmt3a DNA methyltransferase and its functional implications.
Progress in molecular biology and translational science , 2013 | Pubmed ID: 23663978
Non-radioactive protein lysine methyltransferase microplate assay based on reading domains.
ChemMedChem Mar, 2014 | Pubmed ID: 23671032
Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA).
Nucleic acids research Oct, 2013 | Pubmed ID: 23877245
The Tudor domain of the PHD finger protein 1 is a dual reader of lysine trimethylation at lysine 36 of histone H3 and lysine 27 of histone variant H3t.
Journal of molecular biology Apr, 2014 | Pubmed ID: 23954330
Synthesis and evaluation of analogues of N-phthaloyl-l-tryptophan (RG108) as inhibitors of DNA methyltransferase 1.
Journal of medicinal chemistry Jan, 2014 | Pubmed ID: 24328113
Genomic imprinting--the struggle of the genders at the molecular level.
Angewandte Chemie (International ed. in English) Dec, 2013 | Pubmed ID: 24346936
The UHRF1 protein stimulates the activity and specificity of the maintenance DNA methyltransferase DNMT1 by an allosteric mechanism.
The Journal of biological chemistry Feb, 2014 | Pubmed ID: 24368767
Substrate specificity analysis and novel substrates of the protein lysine methyltransferase NSD1.
Chemistry & biology Feb, 2014 | Pubmed ID: 24412544
Targeted methylation of the epithelial cell adhesion molecule (EpCAM) promoter to silence its expression in ovarian cancer cells.
PloS one , 2014 | Pubmed ID: 24489952
Targeted mutagenesis results in an activation of DNA methyltransferase 1 and confirms an autoinhibitory role of its RFTS domain.
Chembiochem : a European journal of chemical biology Mar, 2014 | Pubmed ID: 24532244
Design, synthesis and biological evaluation of 4-amino-N- (4-aminophenyl)benzamide analogues of quinoline-based SGI-1027 as inhibitors of DNA methylation.
ChemMedChem Mar, 2014 | Pubmed ID: 24678024
The application of next generation sequencing in DNA methylation analysis.
Genes , 2010 | Pubmed ID: 24710012
The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu.
Nucleic acids research , 2014 | Pubmed ID: 24711368
Label-free measurement of histone lysine methyltransferases activity by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.
Analytical biochemistry Jul, 2014 | Pubmed ID: 24747023
New concepts in DNA methylation.
Trends in biochemical sciences Jul, 2014 | Pubmed ID: 24947342
Regulation of DNA methylation patterns by CK2-mediated phosphorylation of Dnmt3a.
Cell reports Aug, 2014 | Pubmed ID: 25066127
Role of somatic cancer mutations in human protein lysine methyltransferases.
Biochimica et biophysica acta Aug, 2014 | Pubmed ID: 25123655
Cooperative DNA Binding and Protein/DNA Fiber Formation Increases the Activity of the Dnmt3a DNA Methyltransferase.
The Journal of biological chemistry Oct, 2014 | Pubmed ID: 25147181
Application of histone modification-specific interaction domains as an alternative to antibodies.
Genome research Nov, 2014 | Pubmed ID: 25301795
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