Joshua D. Shrout

Department of Civil and Environmental Engineering and Earth Sciences,
Eck Institute for Global Health,
Department of Biological Sciences

University of Notre Dame

BIOGRAPHY

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PUBLICATIONS

Inhibition of bacterial perchlorate reduction by zero-valent iron.

Biodegradation Feb, 2005 | Pubmed ID: 15727152

Isolation and characterization of autotrophic, hydrogen-utilizing, perchlorate-reducing bacteria.

Applied microbiology and biotechnology Apr, 2005 | Pubmed ID: 15834721

Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) degradation by Acetobacterium paludosum.

Biodegradation Dec, 2005 | Pubmed ID: 15865346

Stimulation and molecular characterization of bacterial perchlorate degradation by plant-produced electron donors.

Environmental science & technology Jan, 2006 | Pubmed ID: 16433366

Influence of electron donor, oxygen, and redox potential on bacterial perchlorate degradation.

Water research Mar, 2006 | Pubmed ID: 16522326

The impact of quorum sensing and swarming motility on Pseudomonas aeruginosa biofilm formation is nutritionally conditional.

Molecular microbiology Dec, 2006 | Pubmed ID: 17059568

Subinhibitory concentrations of azithromycin decrease nontypeable Haemophilus influenzae biofilm formation and Diminish established biofilms.

Antimicrobial agents and chemotherapy Jan, 2008 | Pubmed ID: 17954687

Elasticity-mediated nematiclike bacterial organization in model extracellular DNA matrix.

Physical review. E, Statistical, nonlinear, and soft matter physics Sep, 2008 | Pubmed ID: 18850984

Bacteria use type IV pili to walk upright and detach from surfaces.

Science (New York, N.Y.) Oct, 2010 | Pubmed ID: 20929769

Flagella and pili-mediated near-surface single-cell motility mechanisms in P. aeruginosa.

Biophysical journal Apr, 2011 | Pubmed ID: 21463573

Surface hardness impairment of quorum sensing and swarming for Pseudomonas aeruginosa.

PloS one , 2011 | Pubmed ID: 21687741

Variations in exopolysaccharide production by Rhizobium tropici.

Archives of microbiology Mar, 2012 | Pubmed ID: 21858649

MULTISCALE MODELING OF PSEUDOMONAS AERUGINOSA SWARMING.

Mathematical models & methods in applied sciences : M3AS , 2011 | Pubmed ID: 21966078

Imaging and analysis of Pseudomonas aeruginosa swarming and rhamnolipid production.

Applied and environmental microbiology Dec, 2011 | Pubmed ID: 21984238

The contribution of cell-cell signaling and motility to bacterial biofilm formation.

MRS bulletin / Materials Research Society May, 2011 | Pubmed ID: 22053126

Monitoring bacterial twitter: does quorum sensing determine the behavior of water and wastewater treatment biofilms?

Environmental science & technology Feb, 2012 | Pubmed ID: 22296043

Population dynamics during swarming of Pseudomonas aeruginosa.

Communicative & integrative biology Nov, 2011 | Pubmed ID: 22446528

High density waves of the bacterium Pseudomonas aeruginosa in propagating swarms result in efficient colonization of surfaces.

Biophysical journal Aug, 2012 | Pubmed ID: 22947877

Emergence of the P2 phenotype in Pseudomonas aeruginosa PAO1 strains involves various mutations in mexT or mexF.

Journal of bacteriology Jan, 2014 | Pubmed ID: 24244000

Spatial organization of Pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal Raman microscopy.

The Analyst Nov, 2014 | Pubmed ID: 24883432

MALDI-guided SIMS: multiscale imaging of metabolites in bacterial biofilms.

Analytical chemistry Sep, 2014 | Pubmed ID: 25133532

Cell division resets polarity and motility for the bacterium Myxococcus xanthus.

Journal of bacteriology Nov, 2014 | Pubmed ID: 25157084

Correlated imaging with C60-SIMS and confocal Raman microscopy: Visualization of cell-scale molecular distributions in bacterial biofilms.

Analytical chemistry Nov, 2014 | Pubmed ID: 25268906

Type IV pili interactions promote intercellular association and moderate swarming of Pseudomonas aeruginosa.

Proceedings of the National Academy of Sciences of the United States of America Dec, 2014 | Pubmed ID: 25468980

A fantastic voyage for sliding bacteria.

Trends in microbiology Mar, 2015 | Pubmed ID: 25777934

INSTITUTIONS

University of Notre Dame

JOVE ARTICLES

Preparation, Imaging, and Quantification of Bacterial Surface Motility Assays

Nydia Morales-Soto^1,2,

Morgen E. Anyan¹,

Anne E. Mattingly¹,

Chinedu S. Madukoma¹,

Cameron W. Harvey³,

Mark Alber³,

Eric Déziel⁴,

Daniel B. Kearns⁵,

Joshua D. Shrout^1,2,6

¹Department of Civil and Environmental Engineering and Earth Sciences, University of Notre Dame,

²Eck Institute for Global Health, University of Notre Dame,

³Department of Applied and Computational Mathematics and Statistics, University of Notre Dame,

⁴, INRS-Institut Armand-Frappier,

⁵Department of Biology, Indiana University,

⁶Department of Biological Sciences, University of Notre Dame

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Joshua D. Shrout

Department of Civil and Environmental Engineering and Earth Sciences,Eck Institute for Global Health,Department of Biological Sciences

University of Notre Dame

Preparation, Imaging, and Quantification of Bacterial Surface Motility Assays

Department of Civil and Environmental Engineering and Earth Sciences,
Eck Institute for Global Health,
Department of Biological Sciences