Shu-lin Liu

Program in Translational Biomechanics, University of Pennsylvania

Affiliated withUniversity of Pennsylvania

Research Area

Biology

Biography

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JoVE Journal Publications

Article Total : 1	Year
Publication title	2016

Other Publications

Article	Year
The evolving genome of Salmonella enterica serovar Pullorum. Journal of bacteriology\| PubMed ID: 11976291	2002
Inversions over the terminus region in Salmonella and Escherichia coli: IS200s as the sites of homologous recombination inverting the chromosome of Salmonella enterica serovar typhi. Journal of bacteriology\| PubMed ID: 12399489	2002
Genomic diversification among archival strains of Salmonella enterica serovar typhimurium LT7. Journal of bacteriology\| PubMed ID: 12644482	2003
Wavelet to predict bacterial ori and ter: a tendency towards a physical balance. BMC genomics\| PubMed ID: 12732098	2003
[Changes of liver function in patients with severe viral hepatitis before and after treatment with hematological replacement therapy]. Zhongguo wei zhong bing ji jiu yi xue = Chinese critical care medicine = Zhongguo weizhongbing jijiuyixue\| PubMed ID: 12857479	2003
Signaling pathway involved in methionine enkephalin-promoted survival of lymphocytes infected by simian immunodeficiency virus in the early stage in vitro. International immunopharmacology\| PubMed ID: 14975362	2004
Salmonella enterica serovar Typhi strains from which SPI7, a 134-kilobase island with genes for Vi exopolysaccharide and other functions, has been deleted. Journal of bacteriology\| PubMed ID: 15126484	2004
Morphine-promoted survival of CEMx174 cells in early stages of SIV infection in vitro: involvement of the multiple molecular mechanisms. Toxicology in vitro : an international journal published in association with BIBRA\| PubMed ID: 15130602	2004
[Establishment of a method to detect multiple antennae carcinoembryonic antigen (MA-CEA) and MA-CEA level in the sera of patients with malignant tumors]. Xi bao yu fen zi mian yi xue za zhi = Chinese journal of cellular and molecular immunology\| PubMed ID: 15555448	2004
Diversity of genome structure in Salmonella enterica serovar Typhi populations. Journal of bacteriology\| PubMed ID: 15805510	2005
The genome of Salmonella enterica serovar gallinarum: distinct insertions/deletions and rare rearrangements. Journal of bacteriology\| PubMed ID: 15995186	2005
Genome plasticity and ori-ter rebalancing in Salmonella typhi. Molecular biology and evolution\| PubMed ID: 16237205	2006
Thrombomodulin plays an important role in arterial remodeling and neointima formation in mouse carotid ligation model. Thrombosis and haemostasis\| PubMed ID: 16543971	2006
The effect of statin on the aortic gene expression profiling. International journal of cardiology\| PubMed ID: 16678288	2007
A novel inhibitory effect of naloxone on macrophage activation and atherosclerosis formation in mice. Journal of the American College of Cardiology\| PubMed ID: 17084265	2006
Phylogenetically clustering of rhizobia by genome structure: application to unclassified Rhizobium. Journal of environmental sciences (China)\| PubMed ID: 17294652	2006
Remodeling of carotid arteries is associated with increased expression of thrombomodulin in a mouse transverse aortic constriction model. Thrombosis and haemostasis\| PubMed ID: 17393030	2007
Spontaneous conversion between mutL and 6 bpDeltamutL in Salmonella typhimurium LT7: association with genome diversification and possible roles in bacterial adaptation. Genomics\| PubMed ID: 17689047	2007
Diverse genome structures of Salmonella paratyphi C. BMC genomics\| PubMed ID: 17718928	2007
Two oral HBx vaccines delivered by live attenuated Salmonella: both eliciting effective anti-tumor immunity. Cancer letters\| PubMed ID: 18226855	2008
Physical mapping of Salmonella genomes. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 18363230	2007
Ets-1 mediates platelet-derived growth factor-BB-induced thrombomodulin expression in human vascular smooth muscle cells. Cardiovascular research\| PubMed ID: 19091791	2009
Dextromethorphan reduces oxidative stress and inhibits atherosclerosis and neointima formation in mice. Cardiovascular research\| PubMed ID: 19189960	2009
Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi. PloS one\| PubMed ID: 19229335	2009
[Genomic comparisons of multiresistant Pseudomonas aeruginosa isolates obtained from surgical intensive care unit]. Zhonghua yi xue za zhi\| PubMed ID: 19257960	2008
A novel inhibitory effect of Antrodia camphorata extract on vascular smooth muscle cell migration and neointima formation in mice. International heart journal\| PubMed ID: 19367031	2009
Salmonella expressing a T-cell epitope from Sendai virus are able to induce anti-infection immunity. Journal of medical microbiology\| PubMed ID: 19528162	2009
A genome map of Salmonella enterica serovar Agona: numerous insertions and deletions reflecting the evolutionary history of a human pathogen. FEMS microbiology letters\| PubMed ID: 19533840	2009
Oral vaccination with attenuated Salmonella enterica strains encoding T-cell epitopes from tumor antigen NY-ESO-1 induces specific cytotoxic T-lymphocyte responses. Clinical and vaccine immunology : CVI\| PubMed ID: 20375244	2010
Production of enterodiol from defatted flaxseeds through biotransformation by human intestinal bacteria. BMC microbiology\| PubMed ID: 20398397	2010
Compromised T-cell immunity and virus-like structure in a patient with pulmonary hypertension. American journal of respiratory and critical care medicine\| PubMed ID: 20675680	2010
PEG-interspersed nitrilotriacetic acid-functionalized quantum dots for site-specific labeling of prion proteins expressed on cell surfaces. Biomaterials\| PubMed ID: 20723972	2010
Multiple genetic switches spontaneously modulating bacterial mutability. BMC evolutionary biology\| PubMed ID: 20836863	2010
mutL as a genetic switch of bacterial mutability: turned on or off through repeat copy number changes. FEMS microbiology letters\| PubMed ID: 20874753	2010
SPC-P1: a pathogenicity-associated prophage of Salmonella paratyphi C. BMC genomics\| PubMed ID: 21192789	2010
Tn5AraOut mutagenesis for the identification of Yersinia pestis genes involved in resistance towards cationic antimicrobial peptides. Microbial pathogenesis\| PubMed ID: 21575704	2011
Hydrogen Therapy may be a Novel and Effective Treatment for COPD. Frontiers in pharmacology\| PubMed ID: 21687512	2011
Protective effect of hydrogen-rich saline on decompression sickness in rats. Aviation, space, and environmental medicine\| PubMed ID: 21702310	2011
Visualizing the endocytic and exocytic processes of wheat germ agglutinin by quantum dot-based single-particle tracking. Biomaterials\| PubMed ID: 21764443	2011
Discovery of serum biomarkers of alcoholic fatty liver in a rodent model: C-reactive protein. Journal of biomedical science\| PubMed ID: 21806828	2011
Thrombomodulin domains attenuate atherosclerosis by inhibiting thrombin-induced endothelial cell activation. Cardiovascular research\| PubMed ID: 21840881	2011
A novel mutation in CACNA1S gene associated with hypokalemic periodic paralysis which has a gender difference in the penetrance. Journal of molecular neuroscience : MN\| PubMed ID: 21845430	2012
Gene decay in Shigella as an incipient stage of host-adaptation. PloS one\| PubMed ID: 22110755	2011
The 3Cs provide a novel concept of bacterial species: messages from the genome as illustrated by Salmonella. Antonie van Leeuwenhoek\| PubMed ID: 22113699	2012
Effectively and efficiently dissecting the infection of influenza virus by quantum-dot-based single-particle tracking. ACS nano\| PubMed ID: 22117089	2012
Complete genome sequence of Salmonella enterica serovar pullorum RKS5078. Journal of bacteriology\| PubMed ID: 22247537	2012
Inheritance of the Salmonella virulence plasmids: mostly vertical and rarely horizontal. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 22449772	2012
The antidepressant effect of secoisolariciresinol, a lignan-type phytoestrogen constituent of flaxseed, on ovariectomized mice. Journal of natural medicines\| PubMed ID: 22476613	2013
Thrombomodulin is an ezrin-interacting protein that controls epithelial morphology and promotes collective cell migration. FASEB journal : official publication of the Federation of American Societies for Experimental Biology\| PubMed ID: 22593542	2012
Identification of a known mutation in Notch 3 in familiar CADASIL in China. PloS one\| PubMed ID: 22623959	2012
High-efficiency dual labeling of influenza virus for single-virus imaging. Biomaterials\| PubMed ID: 22854679	2012
The type VI secretion system gene cluster of Salmonella typhimurium: required for full virulence in mice. Journal of basic microbiology\| PubMed ID: 22961625	2013
Myosin-driven intercellular transportation of wheat germ agglutinin mediated by membrane nanotubes between human lung cancer cells. ACS nano\| PubMed ID: 23102457	2012
Cardiovascular protection by ApoE and ApoE-HDL linked to suppression of ECM gene expression and arterial stiffening. Cell reports\| PubMed ID: 23103162	2012
Dextromethorphan attenuates LPS-induced adhesion molecule expression in human endothelial cells. Microcirculation (New York, N.Y. : 1994)\| PubMed ID: 23140507	2013
Pseudomonas aeruginosa isolates of distinct sub-genotypes exhibit similar potential of antimicrobial resistance by drugs exposure. Antonie van Leeuwenhoek\| PubMed ID: 23224438	2013
Site-specific labeling of baculovirus in an integrated microfluidic device. Lab on a chip\| PubMed ID: 23299251	2013
Thrombomodulin regulates keratinocyte differentiation and promotes wound healing. The Journal of investigative dermatology\| PubMed ID: 23321922	2013
A simple point-of-care microfluidic immunomagnetic fluorescence assay for pathogens. Analytical chemistry\| PubMed ID: 23391352	2013
miR-221/222 compensates for Skp2-mediated p27 degradation and is a primary target of cell cycle regulation by prostacyclin and cAMP. PloS one\| PubMed ID: 23409140	2013
Identification of genes to differentiate closely related Salmonella lineages. PloS one\| PubMed ID: 23441160	2013
Genomic comparison between Salmonella Gallinarum and Pullorum: differential pseudogene formation under common host restriction. PloS one\| PubMed ID: 23555032	2013
Type VIII collagen mediates vessel wall remodeling after arterial injury and fibrous cap formation in atherosclerosis. The American journal of pathology\| PubMed ID: 23567639	2013
Self-biotinylation and site-specific double labeling of baculovirus using quantum dots for single-virus in-situ tracking. Biomaterials\| PubMed ID: 23831187	2013
[Hennekam syndrome: a case report and review of literature]. Zhonghua nei ke za zhi\| PubMed ID: 23856108	2013
Defining natural species of bacteria: clear-cut genomic boundaries revealed by a turning point in nucleotide sequence divergence. BMC genomics\| PubMed ID: 23865772	2013
Characterization of the defects in the ATP lid of E. coli MutL that cause transient hypermutability. DNA repair\| PubMed ID: 23916559	2013
Genetic boundaries to delineate the typhoid agent and other Salmonella serotypes into distinct natural lineages. Genomics\| PubMed ID: 23933189	2013
Genomic comparison of Salmonella typhimurium DT104 with non-DT104 strains. Molecular genetics and genomics : MGG\| PubMed ID: 23933962	2013
Fast and high-accuracy localization for three-dimensional single-particle tracking. Scientific reports\| PubMed ID: 23955270	2013
Non-contiguous finished genome sequence and description of Salmonella enterica subsp. houtenae str. RKS3027. Standards in genomic sciences\| PubMed ID: 23991252	2013
Prediction of bacterial type IV secreted effectors by C-terminal features. BMC genomics\| PubMed ID: 24447430	2014
Exploring sialic acid receptors-related infection behavior of avian influenza virus in human bronchial epithelial cells by single-particle tracking. Small (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 24648118	2014
Evaluation of nonspecific interactions between quantum dots and proteins. Physical chemistry chemical physics : PCCP\| PubMed ID: 24652120	2014
Globally visualizing the microtubule-dependent transport behaviors of influenza virus in live cells. Analytical chemistry\| PubMed ID: 24678700	2014
Dynamics of aeolian desertification and its driving forces in the Horqin Sandy Land, Northern China. Environmental monitoring and assessment\| PubMed ID: 24891073	2014
Differential efficiency in exogenous DNA acquisition among closely related Salmonella strains: implications in bacterial speciation. BMC microbiology\| PubMed ID: 24928416	2014
A FAK-Cas-Rac-lamellipodin signaling module transduces extracellular matrix stiffness into mechanosensitive cell cycling. Science signaling\| PubMed ID: 24939893	2014
Comparative genomic analysis between typhoidal and non-typhoidal Salmonella serovars reveals typhoid-specific protein families. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 24951835	2014
Three-dimensional tracking of Rab5- and Rab7-associated infection process of influenza virus. Small (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 24976105	2014
Characterization of nodal/TGF-lefty signaling pathway gene variants for possible roles in congenital heart diseases. PloS one\| PubMed ID: 25111179	2014
CTAG-containing cleavage site profiling to delineate Salmonella into natural clusters. PloS one\| PubMed ID: 25137186	2014
Individual-level analysis of differential expression of genes and pathways for personalized medicine. Bioinformatics (Oxford, England)\| PubMed ID: 25165092	2015
Reduced expression of SOX7 in ovarian cancer: a novel tumor suppressor through the Wnt/β-catenin signaling pathway. Journal of ovarian research\| PubMed ID: 25297608	2014
Simultaneous in situ quantification of two cellular lipid pools using orthogonal fluorescent sensors. Angewandte Chemie (International ed. in English)\| PubMed ID: 25345859	2014
[Study on sustainable development of industy of ethnic medicine in minority area]. Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica\| PubMed ID: 25509310	2014
Optimization of ultrasound extraction of Alisma orientalis polysaccharides by response surface methodology and their antioxidant activities. Carbohydrate polymers\| PubMed ID: 25563949	2015
N-Cadherin Induction by ECM Stiffness and FAK Overrides the Spreading Requirement for Proliferation of Vascular Smooth Muscle Cells. Cell reports\| PubMed ID: 25753414	2015
Inherited neurovascular diseases affecting cerebral blood vessels and smooth muscle. Metabolic brain disease\| PubMed ID: 25893882	2015
Profile of differentially expressed intratumoral cytokines to predict the immune-polarizing side effects of tamoxifen in breast cancer treatment. American journal of cancer research\| PubMed ID: 25973310	2015
Apolipoprotein E3 Inhibits Rho to Regulate the Mechanosensitive Expression of Cox2. PloS one\| PubMed ID: 26068461	2015
Characterization of SMAD3 Gene Variants for Possible Roles in Ventricular Septal Defects and Other Congenital Heart Diseases. PloS one\| PubMed ID: 26110764	2015
Complete genome sequence of Salmonella enterica subspecies arizonae str. RKS2983. Standards in genomic sciences\| PubMed ID: 26203341	2015
Identification of two novel critical mutations in PCNT gene resulting in microcephalic osteodysplastic primordial dwarfism type II associated with multiple intracranial aneurysms. Metabolic brain disease\| PubMed ID: 26231886	2015
Identification of a novel mutation associated with familial adenomatous polyposis and colorectal cancer. International journal of molecular medicine\| PubMed ID: 26252958	2015
Identification of Aberrant Chromosomal Regions in Human Breast Cancer Using Gene Expression Data and Related Gene Information. Medical science monitor : international medical journal of experimental and clinical research\| PubMed ID: 26319982	2015
Clicking Hydrazine and Aldehyde: The Way to Labeling of Viruses with Quantum Dots. ACS nano\| PubMed ID: 26549044	2015
Characterization of Transcriptional Repressor Gene MSX1 Variations for Possible Associations with Congenital Heart Diseases. PloS one\| PubMed ID: 26556783	2015
Matrix metalloproteinase-12 is an essential mediator of acute and chronic arterial stiffening. Scientific reports\| PubMed ID: 26608672	2015
Tracking single viruses infecting their host cells using quantum dots. Chemical Society reviews\| PubMed ID: 26695711	2016
Molecular Genotyping of HIV-1 Strains from Newly Infected Men Who Have Sex with Men in Harbin, China. AIDS research and human retroviruses\| PubMed ID: 26892477	2016
Dissecting the Factors Affecting the Fluorescence Stability of Quantum Dots in Live Cells. ACS applied materials & interfaces\| PubMed ID: 26998815	2016
Polymorphisms in the CHIT1 gene: Associations with colorectal cancer. Oncotarget\| PubMed ID: 27153562	2016
SOX7 co-regulates Wnt/β-catenin signaling with Axin-2: both expressed at low levels in breast cancer. Scientific reports\| PubMed ID: 27188720	2016
Cloning, expression, and characterization of a four-component O-demethylase from human intestinal bacterium Eubacterium limosum ZL-II. Applied microbiology and biotechnology\| PubMed ID: 27236811	2016
Genotyping of Salmonella with lineage-specific genes: correlation with serotyping. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases\| PubMed ID: 27343985	2016
Characterization of human bone morphogenetic protein gene variants for possible roles in congenital heart disease. Molecular medicine reports\| PubMed ID: 27357418	2016
Combined effects of age and polymorphisms in Notch3 in the pathogenesis of cerebral infarction disease. Metabolic brain disease\| PubMed ID: 27370894	2016
Live attenuated Salmonella displaying HIV-1 10E8 epitope on fimbriae: systemic and mucosal immune responses in BALB/c mice by mucosal administration. Scientific reports\| PubMed ID: 27411313	2016
A rapid loop-mediated isothermal amplification (LAMP) method for detection of the macrolide-streptogramin type B resistance gene msrA in Staphylococcus aureus. Journal of global antimicrobial resistance\| PubMed ID: 27607914	2016