Ioannis Kakadiaris
Computational Biomedicine Lab,
Texas Institute of Measurement Evaluation and Statistics,
Computational Biomedicine Lab, Texas Institute of Measurement Evaluation and Statistics
University of Houston
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Hybrid segmentation framework for tissue images containing gene expression data.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2005 | Pubmed ID: 16685853
Towards automatic reconstruction of dendrite morphology from live neurons.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference , 2004 | Pubmed ID: 17272057
Frames-Based Denoising in 3D Confocal Microscopy Imaging.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference , 2005 | Pubmed ID: 17282170
Performance Evaluation of Abdominal Fat Burden Quantification in CT.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference , 2005 | Pubmed ID: 17282946
Three-dimensional face recognition in the presence of facial expressions: an annotated deformable model approach.
IEEE transactions on pattern analysis and machine intelligence Apr, 2007 | Pubmed ID: 17299221
Learning-based segmentation framework for tissue images containing gene expression data.
IEEE transactions on medical imaging May, 2007 | Pubmed ID: 17518066
Automated pericardial fat quantification in CT data.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference , 2006 | Pubmed ID: 17946011
One-class acoustic characterization applied to blood detection in IVUS.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2007 | Pubmed ID: 18051060
Image-based gating of intravascular ultrasound pullback sequences.
IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society May, 2008 | Pubmed ID: 18693497
Denoising for 3-d photon-limited imaging data using nonseparable filterbanks.
IEEE transactions on image processing : a publication of the IEEE Signal Processing Society Dec, 2008 | Pubmed ID: 19004704
Subdivision meshes for organizing spatial biomedical data.
Methods (San Diego, Calif.) Feb, 2010 | Pubmed ID: 19664714
Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain.
Methods (San Diego, Calif.) Feb, 2010 | Pubmed ID: 19698790
Computer-aided non-contrast CT-based quantification of pericardial and thoracic fat and their associations with coronary calcium and Metabolic Syndrome.
Atherosclerosis Mar, 2010 | Pubmed ID: 19748623
Functional morphology analysis of the left anterior descending coronary artery in EBCT images.
IEEE transactions on bio-medical engineering Aug, 2010 | Pubmed ID: 20176530
A supervised classification-based method for coronary calcium detection in non-contrast CT.
The international journal of cardiovascular imaging Oct, 2010 | Pubmed ID: 20229312
Toward the automatic detection of coronary artery calcification in non-contrast computed tomography data.
The international journal of cardiovascular imaging Oct, 2010 | Pubmed ID: 20232154
An inverse scattering algorithm for the segmentation of the luminal border on intravascular ultrasound data.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2009 | Pubmed ID: 20426195
Accurate landmarking of three-dimensional facial data in the presence of facial expressions and occlusions using a three-dimensional statistical facial feature model.
IEEE transactions on systems, man, and cybernetics. Part B, Cybernetics : a publication of the IEEE Systems, Man, and Cybernetics Society Oct, 2011 | Pubmed ID: 21622076
Towards extra-luminal blood detection from intravascular ultrasound radio frequency data.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2011 | Pubmed ID: 22003642
Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference , 2011 | Pubmed ID: 22256217
Lossless 3-D reconstruction and registration of semi-quantitative gene expression data in the mouse brain.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference , 2011 | Pubmed ID: 22256218
Analysis of contrast-enhanced intravascular ultrasound images for the assessment of coronary plaque neoangiogenesis: another step closer to the identification of the vulnerable plaque.
Current pharmaceutical design , 2012 | Pubmed ID: 22352774
Landmark/Image-based Deformable Registration of Gene Expression Data.
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition Jun, 2011 | Pubmed ID: 22388864
Automated, foot-bone registration using subdivision-embedded atlases for spatial mapping of bone mineral density.
Journal of digital imaging Jun, 2013 | Pubmed ID: 23090209
Similarity-based appearance-prior for fitting a subdivision mesh in gene expression images.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2012 | Pubmed ID: 23285598
Probabilistic segmentation of the lumen from intravascular ultrasound radio frequency data.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2012 | Pubmed ID: 23286080
Segmentation of zebrafish embryonic images using a geometric atlas deformation.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference , 2012 | Pubmed ID: 23366804
Segmentation of the luminal border in intravascular ultrasound B-mode images using a probabilistic approach.
Medical image analysis Aug, 2013 | Pubmed ID: 23490618
Standardized evaluation methodology and reference database for evaluating IVUS image segmentation.
Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Mar, 2014 | Pubmed ID: 24012215
3D dense local point descriptors for mouse brain gene expression images.
Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Jul, 2014 | Pubmed ID: 24786719
Identification of environmental chemicals that induce yolk malabsorption in zebrafish using automated image segmentation.
Reproductive toxicology (Elmsford, N.Y.) Aug, 2015 | Pubmed ID: 25462786
PDM-ENLOR for segmentation of mouse brain gene expression images.
Medical image analysis Feb, 2015 | Pubmed ID: 25476414
Automatic Morphological Reconstruction of Neurons from Multiphoton and Confocal Microscopy Images Using 3D Tubular Models.
Neuroinformatics Jul, 2015 | Pubmed ID: 25631538
Markov Random Field-based Fitting of a Subdivision-based Geometric Atlas.
Proceedings. IEEE International Conference on Computer Vision Nov, 2011 | Pubmed ID: 26561477
Multi-scale segmentation of neurons based on one-class classification.
Journal of neuroscience methods 06, 2016 | Pubmed ID: 27038663
A novel method for imaging the pharmacological effects of antibiotic treatment on Clostridium difficile.
Anaerobe Aug, 2016 | Pubmed ID: 27108094
A physics-based intravascular ultrasound image reconstruction method for lumen segmentation.
Computers in biology and medicine 08, 2016 | Pubmed ID: 27235803
An exploratory decision tree analysis to predict physical activity compliance rates in breast cancer survivors.
Ethnicity & health Oct, 2019 | Pubmed ID: 28922931
Computational imaging of aortic vasa vasorum and neovascularization in rabbits using contrast-enhanced intravascular ultrasound: Association with histological analysis.
Anatolian journal of cardiology Aug, 2018 | Pubmed ID: 30088486
Artificial Intelligence and Family Medicine: Better Together.
Family medicine Jan, 2020 | Pubmed ID: 31914179
A Layered Mounting Method for Extended Time-Lapse Confocal Microscopy of Whole Zebrafish Embryos
Sanat Upadhyay1,
Leoncio Vergara2,
Pranjali Shah2,
Jan-Åke Gustafsson3,4,
Ioannis Kakadiaris1,4,
Maria Bondesson5
1Computational Biomedicine Lab, Texas Institute of Measurement Evaluation and Statistics, University of Houston,
2Institute of Biosciences and Technology, Texas A&M Health Science Center,
3Department of Biology and Biochemistry, Center for Nuclear Receptors and Cell Signaling, University of Houston,
4Department of Biosciences and Nutrition, Novum, Karolinska Institutet,
5Department of Intelligent Systems Engineering, Indiana University
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