Matthew J. Gaffrey

Integrative Omics, Pacific Northwest National Laboratory

Affiliated withPacific Northwest National Laboratory

Research Area

Biochemistry

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2021

Other Publications

Article	Year
Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling. Free radical biology & medicine\| PubMed ID: 24333276	2014
Resin-assisted enrichment of thiols as a general strategy for proteomic profiling of cysteine-based reversible modifications. Nature protocols\| PubMed ID: 24336471	2014
Proteome-wide light/dark modulation of thiol oxidation in cyanobacteria revealed by quantitative site-specific redox proteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 25118246	2014
Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment. Analytical chemistry\| PubMed ID: 25517423	2015
Quantitative Profiling of Protein S-Glutathionylation Reveals Redox-Dependent Regulation of Macrophage Function during Nanoparticle-Induced Oxidative Stress. ACS nano\| PubMed ID: 26700264	2016
Cells Respond to Distinct Nanoparticle Properties with Multiple Strategies As Revealed by Single-Cell RNA-Seq. ACS nano\| PubMed ID: 27788331	2016
Quantitative proteomic characterization of redox-dependent post-translational modifications on protein cysteines. Molecular bioSystems\| PubMed ID: 28357434	2017
Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells. Nucleic acids research\| PubMed ID: 29040675	2018
Fatiguing contractions increase protein S-glutathionylation occupancy in mouse skeletal muscle. Redox biology\| PubMed ID: 29857311	2018
Mass spectrometry-based proteomics for system-level characterization of biological responses to engineered nanomaterials. Analytical and bioanalytical chemistry\| PubMed ID: 29947897	2018
Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells. Communications biology\| PubMed ID: 30271983	2018
All that is silver is not toxic: silver ion and particle kinetics reveals the role of silver ion aging and dosimetry on the toxicity of silver nanoparticles. Particle and fibre toxicology\| PubMed ID: 30518385	2018
Reference genes for accurate normalization of gene expression in wood-decomposing fungi. Fungal genetics and biology : FG & B\| PubMed ID: 30529285	2019
Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells. Analytical chemistry\| PubMed ID: 30557009	2019
Improving mitochondrial function with SS-31 reverses age-related redox stress and improves exercise tolerance in aged mice. Free radical biology & medicine\| PubMed ID: 30597195	2019
Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of strains. Biotechnology for biofuels\| PubMed ID: 30923568	2019
Rosette core fungal resistance in Arabidopsis thaliana. Planta\| PubMed ID: 31529398	2019
Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line. Journal of proteome research\| PubMed ID: 32058723	2020
A proteome-wide assessment of the oxidative stress paradigm for metal and metal-oxide nanomaterials in human macrophages. NanoImpact\| PubMed ID: 32133426	2020
Evaluation of the cytotoxic and cellular proteome impacts of food-grade TiO (E171) using simulated gastrointestinal digestions and a tri-culture small intestinal epithelial model. NanoImpact\| PubMed ID: 32133427	2020
Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score Strategy. Journal of proteome research\| PubMed ID: 32175737	2020
Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling. Journal of proteome research\| PubMed ID: 32407631	2020
Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography-Mass Spectrometry for High-Throughput Single-Cell Proteomics. Analytical chemistry\| PubMed ID: 32639140	2020
Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice. eLife\| PubMed ID: 32648542
Stochiometric quantification of the thiol redox proteome of macrophages reveals subcellular compartmentalization and susceptibility to oxidative perturbations. Redox biology\| PubMed ID: 32750668	2020
Protein thiol oxidation in the rat lung following e-cigarette exposure. Redox biology\| PubMed ID: 33080441	2020
Characterization of cellular oxidative stress response by stoichiometric redox proteomics. American journal of physiology. Cell physiology\| PubMed ID: 33264075	2021
Enhancement of polyhydroxyalkanoate production by co-feeding lignin derivatives with glycerol in Pseudomonas putida KT2440. Biotechnology for biofuels\| PubMed ID: 33413621	2021
Stoichiometric Thiol Redox Proteomics for Quantifying Cellular Responses to Perturbations. Antioxidants (Basel, Switzerland)\| PubMed ID: 33807006	2021