Dmitry M. Kolpashchikov

University of Central Florida

Affiliated withUniversity of Central Florida

Research Area

Biochemistry

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2024

Other Publications

Article	Year
Liquid-to-gel transition for visual and tactile detection of biological analytes. Chemical communications (Cambridge, England)\| PubMed ID: 29082399	2017
Nanoreactors based on DNAzyme-functionalized magnetic nanoparticles activated by magnetic field. Nanoscale\| PubMed ID: 29297526	2018
Triple-stem DNA probe: a new conformationally constrained probe for SNP typing. Chembiochem : a European journal of chemical biology\| PubMed ID: 19444831	2009
Nucleic acid detection using MNAzymes. Chemistry & biology\| PubMed ID: 20189100	2010
RNA-cleaving deoxyribozyme sensor for nucleic acid analysis: the limit of detection. Chembiochem : a European journal of chemical biology\| PubMed ID: 20301161	2010
Molecular logic gates connected through DNA four-way junctions. Angewandte Chemie (International ed. in English)\| PubMed ID: 20458718	2010
Binary probes for nucleic acid analysis. Chemical reviews\| PubMed ID: 20583806	2010
A single molecular beacon probe is sufficient for the analysis of multiple nucleic acid sequences. Chembiochem : a European journal of chemical biology\| PubMed ID: 20665615	2010
Real-time SNP analysis in secondary-structure-folded nucleic acids. Angewandte Chemie (International ed. in English)\| PubMed ID: 20963740	2010
Enzyme-assisted binary probe for sensitive detection of RNA and DNA. Chemical communications (Cambridge, England)\| PubMed ID: 20967321	2010
Molecular-beacon-based tricomponent probe for SNP analysis in folded nucleic acids. Chemistry (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 21956816	2011
DNA nanotechnology for nucleic acid analysis: DX motif-based sensor. Chembiochem : a European journal of chemical biology\| PubMed ID: 22006680	2011
Connectable DNA logic gates: OR and XOR logics. Chemistry, an Asian journal\| PubMed ID: 22213731	2012
Molecular logic gates for DNA analysis: detection of rifampin resistance in M. tuberculosis DNA. Angewandte Chemie (International ed. in English)\| PubMed ID: 22888076	2012
Detection of bacterial 16S rRNA using a molecular beacon-based X sensor. Biosensors & bioelectronics\| PubMed ID: 23021850	2013
Two-component covalent inhibitor. Bioorganic & medicinal chemistry\| PubMed ID: 23411398	2013
Operating Cooperatively (OC) sensor for highly specific recognition of nucleic acids. PloS one\| PubMed ID: 23441157	2013
Detection of SNP-containing human DNA sequences using a split sensor with a universal molecular beacon reporter. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 24026686	2013
SNP analysis using a molecular beacon-based operating cooperatively (OC) sensor. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 24026687	2013
Folding of 16S rRNA in a signal-producing structure for the detection of bacteria. Angewandte Chemie (International ed. in English)\| PubMed ID: 24038733	2013
Deoxyribozyme cascade for visual detection of bacterial RNA. Chembiochem : a European journal of chemical biology\| PubMed ID: 24106198	2013
An elegant biosensor molecular beacon probe: challenges and recent solutions. Scientifica\| PubMed ID: 24278758	2012
A differential fluorescent receptor for nucleic acid analysis. Chembiochem : a European journal of chemical biology\| PubMed ID: 24339354	2014
Enzyme-assisted target recycling (EATR) for nucleic acid detection. Chemical Society reviews\| PubMed ID: 24901032	2014
Nuclease-containing media for resettable operation of DNA logic gates. Chemical communications (Cambridge, England)\| PubMed ID: 25493931	2015
Divide and control: split design of multi-input DNA logic gates. Chemical communications (Cambridge, England)\| PubMed ID: 25513764	2015
Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems. Angewandte Chemie (International ed. in English)\| PubMed ID: 25864379	2015
Expedited quantification of mutant ribosomal RNA by binary deoxyribozyme (BiDz) sensors. RNA (New York, N.Y.)\| PubMed ID: 26289345	2015
Bioelectronic Interface Connecting Reversible Logic Gates Based on Enzyme and DNA Reactions. Chemphyschem : a European journal of chemical physics and physical chemistry\| PubMed ID: 27145731	2016
Split Spinach Aptamer for Highly Selective Recognition of DNA and RNA at Ambient Temperatures. Chembiochem : a European journal of chemical biology\| PubMed ID: 27305425	2016
Towards a DNA Nanoprocessor: Reusable Tile-Integrated DNA Circuits. Angewandte Chemie (International ed. in English)\| PubMed ID: 27430161	2016
DNA Antenna Tile-Associated Deoxyribozyme Sensor with Improved Sensitivity. Chembiochem : a European journal of chemical biology\| PubMed ID: 27620365	2016
Nonequilibrium Hybridization Enables Discrimination of a Point Mutation within 5-40 °C. Journal of the American Chemical Society\| PubMed ID: 27681667	2016
DNA nanotechnology for nucleic acid analysis: multifunctional molecular DNA machine for RNA detection. Chemical communications (Cambridge, England)\| PubMed ID: 27886299	2016
Self-Assembling Molecular Logic Gates Based on DNA Crossover Tiles. Chemphyschem : a European journal of chemical physics and physical chemistry\| PubMed ID: 28234410	2017
Multiplex detection of extensively drug resistant tuberculosis using binary deoxyribozyme sensors. Biosensors & bioelectronics\| PubMed ID: 28284077	2017
A universal split spinach aptamer (USSA) for nucleic acid analysis and DNA computation. Chemical communications (Cambridge, England)\| PubMed ID: 28425510	2017
Magnetic Field-Activated Sensing of mRNA in Living Cells. Journal of the American Chemical Society\| PubMed ID: 28817270	2017
A mutation-resistant deoxyribozyme OR gate for highly selective detection of viral nucleic acids. Chemical communications (Cambridge, England)\| PubMed ID: 28900642	2017
A Single Electrochemical Probe Used for Analysis of Multiple Nucleic Acid Sequences. Electroanalysis\| PubMed ID: 29371782	2017
Divide and Control: Comparison of Split and Switch Hybridization Sensors. ChemistrySelect\| PubMed ID: 29372178	2017
DNA Computing Systems Activated by Electrochemically-triggered DNA Release from a Polymer-brush-modified Electrode Array. Electroanalysis\| PubMed ID: 29379265	2017
A universal and label-free impedimetric biosensing platform for discrimination of single nucleotide substitutions in long nucleic acid strands. Biosensors & bioelectronics\| PubMed ID: 29524915	2018
FaptaSyme: A Strategy for Converting a Monomer/Oligomer-Nonselective Aptameric Sensor into an Oligomer-Selective One. Chembiochem : a European journal of chemical biology\| PubMed ID: 29700982	2018
The owl sensor: a 'fragile' DNA nanostructure for the analysis of single nucleotide variations. Nanoscale\| PubMed ID: 29781024	2018
A DNA minimachine for selective and sensitive detection of DNA. The Analyst\| PubMed ID: 30600819	2019
Split Dapoxyl Aptamer for Sequence-Selective Analysis of Nucleic Acid Sequence Based Amplification Amplicons. Analytical chemistry\| PubMed ID: 30680988	2019
Towards DNA Nanomachines for Cancer Treatment: Achieving Selective and Efficient Cleavage of Folded RNA. Angewandte Chemie (International ed. in English)\| PubMed ID: 30693619	2019
Evolution of Hybridization Probes to DNA Machines and Robots. Accounts of chemical research\| PubMed ID: 31243970	2019
Deoxyribozyme-Based DNA Machines for Cancer Therapy. Chembiochem : a European journal of chemical biology\| PubMed ID: 31553102	2020
Bifunctional RNA-Targeting Deoxyribozyme Nanodevice as a Potential Theranostic Agent. Chemistry (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 31943434	2020
Click Chemistry-Based Two-Component System for Efficient Inhibition of Human Immunodeficiency Virus (HIV) Reverse Transcriptase (RT). ACS omega\| PubMed ID: 32149246	2020
Binary (Split) Light-up Aptameric Sensors. Angewandte Chemie (International ed. in English)\| PubMed ID: 32208549	2021
Cut and Paste for Cancer Treatment: A DNA Nanodevice that Cuts Out an RNA Marker Sequence to Activate a Therapeutic Function. Angewandte Chemie (International ed. in English)\| PubMed ID: 32687686	2020
Manufacturing Reusable NAND Logic Gates and Their Initial Circuits for DNA Nanoprocessors. Chemistry (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 33002244	2021
RNA-Cleaving DNA Thresholder Controlled by Concentrations of miRNA Cancer Marker. Chembiochem : a European journal of chemical biology\| PubMed ID: 33433948	2021
Split light up aptamers as a probing tool for nucleic acids. Methods (San Diego, Calif.)\| PubMed ID: 33992774	2022
DNA nanomachine for visual detection of structured RNA and double stranded DNA. Chemical communications (Cambridge, England)\| PubMed ID: 35415727	2022
Towards sustainable diagnostics: replacing unstable HO by photoactive TiO in testing systems for visible and tangible diagnostics for use by blind people. RSC advances\| PubMed ID: 35558580	2018
Binary Antisense Oligonucleotide Agent for Cancer Marker-Dependent Degradation of Targeted RNA. Nucleic acid therapeutics\| PubMed ID: 35852843	2022
Toward a Home Test for COVID-19 Diagnosis: DNA Machine for Amplification-Free SARS-CoV-2 Detection in Clinical Samples. ChemMedChem\| PubMed ID: 36031581	2022
Specificity of oligonucleotide gene therapy (OGT) agents. Theranostics\| PubMed ID: 36276652	2022
A self-assembling split aptamer multiplex assay for SARS-COVID19 and miniaturization of a malachite green DNA-based aptamer. Sensors and actuators reports\| PubMed ID: 36373144	2022
OWL2: a molecular beacon-based nanostructure for highly selective detection of single-nucleotide variations in folded nucleic acids. Nanoscale\| PubMed ID: 36880268	2023
DNA Nanomachine (DNM) Biplex Assay for Differentiating Species. International journal of molecular sciences\| PubMed ID: 36901903	2023
Visual Detection of Stem-Loop Primer Amplification (SPA) Products without Denaturation Using Peroxidase-like DNA Machines (PxDM). International journal of molecular sciences\| PubMed ID: 37175522	2023
Detection of Multiplex NASBA RNA Products Using Colorimetric Split G Quadruplex Probes. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 37572289	2023
Cleaving Folded RNA with DNAzyme Agents. Chembiochem : a European journal of chemical biology\| PubMed ID: 37870555	2024
DNAzyme Nanomachine with Fluorogenic Substrate Delivery Function: Advancing Sensitivity in Nucleic Acid Detection. Analytical chemistry\| PubMed ID: 38079240	2023
DNA Nanostructures as Catalysts: Double Crossover Tile-Assisted 5' to 5' and 3' to 3' Chemical Ligation of Oligonucleotides. Bioconjugate chemistry\| PubMed ID: 38135674	2024