two-dimensional-super-resolution-visualization-rat-brain

Two-Dimensional Super-Resolution Visualization of Rat Brain Microvasculature Using Ultrasound Localization Microscopy

The cerebral microvasculature forms a complex network of vessels essential for maintaining brain function. Diseases such as stroke, Alzheimer's disease, ...

Fudan University

For esophageal squamous cell carcinoma, radiotherapy is one of the primary treatments. During the planning before radiotherapy, the intractable task is to precisely delineate the esophageal gross tumor volume (GTV) on medical images. In current clinical practice, the manual delineation suffers from high intra- and inter-rater variability, while also exhausting the oncologists on a treadmill. There is an urgent demand for effective computer-aided automatic segmentation methods. To this end, we designed a novel deep network, dubbed as GloD-LoATUNet.

Automatic segmentation of esophageal gross tumor volume in F-FDG PET/CT images via GloD-LoATUNet.

The precise delineation of esophageal gross tumor volume (GTV) on medical images can promote the radiotherapy effect of esophagus cancer. This work is intended to explore effective learning-based methods to tackle the challenging auto-segmentation problem of esophageal GTV. By employing the progressive hierarchical reasoning mechanism (PHRM), we devised a simple yet effective two-stage deep framework, ConVMLP-ResU-Net. Thereinto, the front-end ConVMLP integrates convolution (ConV) and multi-layer perceptrons (MLP) to capture localized and long-range spatial information, thus making ConVMLP excel in the location and coarse shape prediction of esophageal GTV. According to the PHRM, the front-end ConVMLP should have a strong generalization ability to ensure that the back-end ResU-Net has correct and valid reasoning. Therefore, a condition control training algorithm was proposed to control the training process of ConVMLP for a robust front end. Afterward, the back-end ResU-Net benefits from the yielded mask by ConVMLP to conduct a finer expansive segmentation to output the final result. Extensive experiments were carried out on a clinical cohort, which included 1138 pairs of F-FDG positron emission tomography/computed tomography (PET/CT) images. We report the Dice similarity coefficient, Hausdorff distance, and Mean surface distance as 0.82 ± 0.13, 4.31 ± 7.91 mm, and 1.42 ± 3.69 mm, respectively. The predicted contours visually have good agreements with the ground truths. The devised ConVMLP is apt at locating the esophageal GTV with correct initial shape prediction and hence facilitates the finer segmentation of the back-end ResU-Net. Both the qualitative and quantitative results validate the effectiveness of the proposed method.

Condition control training-based ConVMLP-ResU-Net for semantic segmentation of esophageal cancer in F-FDG PET/CT images.

Accurate segmentation of esophageal gross tumor volume (GTV) indirectly enhances the efficacy of radiotherapy for patients with esophagus cancer. In this domain, learning-based methods have been employed to fuse cross-modality positron emission tomography (PET) and computed tomography (CT) images, aiming to improve segmentation accuracy. This fusion is essential as it combines functional metabolic information from PET with anatomical information from CT, providing complementary information. While the existing three-dimensional (3D) segmentation method has achieved state-of-the-art (SOTA) performance, it typically relies on pure-convolution architectures, limiting its ability to capture long-range spatial dependencies due to convolution's confinement to a local receptive field. To address this limitation and further enhance esophageal GTV segmentation performance, this work proposes a transformer-guided cross-modality adaptive feature fusion network, referred to as TransAttPSNN, which is based on cross-modality PET/CT scans.

A transformer-guided cross-modality adaptive feature fusion framework for esophageal gross tumor volume segmentation.

Ultrasound Localization Microscopy (ULM) surpasses the constraints imposed by acoustic diffraction, achieving sub-wavelength resolution visualization of microvasculature through the precise localization of minute microbubbles (MBs). Nonetheless, the analysis of densely populated regions with overlapping MB point spread responses introduces significant localization errors, limiting the use of technique to low-concentration conditions. This raises a trade-off issue between localization efficiency and MB density. In this work, we present a new deep learning framework that combines Transformer and U-Net architectures, termed ULM-TransUNet. As a non-linear model, it is able to learn the complex data patterns of overlapping MBs in dense conditions for accurate localization. To evaluate the performance of ULM-TransUNet, a series of numerical simulations and in vivo experiments are carried out. Numerical simulation results indicate that ULM-TransUNet achieves high-quality ULM imaging, with improvements of 21.93 % in detection rate, 17.36 % in detection precision, and 20.53 % in detection sensitivity, compared to previous state-of-the-art deep learning (DL) method (e.g., ULM-UNet). For the in vivo experiments, ULM-TransUNet achieves the highest spatial resolution (9.4 μm) and rapid inference speed (26.04 ms/frame). Furthermore, it consistently detects more small vessels and resolves closely spaced vessels more effectively. The outcomes of this work imply that ULM-TransUNet can potentially enhance the microvascular imaging performance on high-density MB conditions.

In vivo ultrasound localization microscopy for high-density microbubbles.

The objective of this study is to assess the diagnostic efficacy of contrast-enhanced ultrasound (CEUS) in determining the level of glioma infiltration and to investigate its correlation with pathological markers.

Contrast-enhanced ultrasound can differentiate the level of glioma infiltration and correlate it with biological behavior: a study based on local pathology.

Microcirculatory heterogeneity plays an essential role in the initiation and progression of glioblastoma (GBM). This study employs super-resolution ultrasound imaging to visualize the microcirculatory heterogeneity in GBM, with the objective of illustrating its predictive value in histological assessments.

An Early Progression Biomarker in Glioblastoma: Microcirculatory Heterogeneity on Ultrasound Localization Microscopy.

We studied the microvascular structure and function of in situ glioblastoma using ultrasound localization microscopy (ULM).

Gaobo Zhang

Department of Biomedical Engineering

Fudan University

Two-Dimensional Super-Resolution Visualization of Rat Brain Microvasculature Using Ultrasound Localization Microscopy

Gaobo Zhang

.css-o250i3{font-size:18px;font-family:Open Sans,sans-serif;line-height:21.6px;}Department of Biomedical Engineering

Fudan University

Two-Dimensional Super-Resolution Visualization of Rat Brain Microvasculature Using Ultrasound Localization Microscopy

Department of Biomedical Engineering