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Department of Biological Sciences
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Bending of DNA by asymmetric charge neutralization: all-atom energy simulations.
Journal of the American Chemical Society May, 2002 | Pubmed ID: 11971734
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.
Nucleic acids research Sep, 2003 | Pubmed ID: 12930962
A structural similarity analysis of double-helical DNA.
Journal of molecular biology Oct, 2004 | Pubmed ID: 15476807
A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction.
Journal of structural and functional genomics , 2004 | Pubmed ID: 15704013
Linking tumor cell cytotoxicity to mechanism of drug action: an integrated analysis of gene expression, small-molecule screening and structural databases.
Proteins May, 2005 | Pubmed ID: 15778971
Detecting transcriptionally active regions using genomic tiling arrays.
Genome biology , 2006 | Pubmed ID: 16859498
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster.
Proceedings of the National Academy of Sciences of the United States of America Aug, 2006 | Pubmed ID: 16880385
Feature extraction using molecular planes for fuzzy relational clustering of a flexible dopamine reuptake inhibitor.
Journal of chemical information and modeling Nov-Dec, 2007 | Pubmed ID: 17967005
3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures.
Nature protocols , 2008 | Pubmed ID: 18600227
Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression.
PloS one , 2008 | Pubmed ID: 18769540
New information content in RNA base pairing deduced from quantitative analysis of high-resolution structures.
Methods (San Diego, Calif.) Mar, 2009 | Pubmed ID: 19150407
Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures.
Nucleic acids research Jul, 2009 | Pubmed ID: 19474339
3DNALandscapes: a database for exploring the conformational features of DNA.
Nucleic acids research Jan, 2010 | Pubmed ID: 19906722
The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex.
Nucleic acids research Aug, 2010 | Pubmed ID: 20223772
Understanding the Sequence Preference of Recurrent RNA Building Blocks using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform.
Journal of chemical theory and computation Jan, 2012 | Pubmed ID: 22712001
[Measuring soil water content by using near infrared spectral characteristics of soil].
Guang pu xue yu guang pu fen xi = Guang pu Aug, 2012 | Pubmed ID: 23156763
Columbia University
Andrew V. Colasanti1,
Xiang-Jun Lu2,
Wilma K. Olson1
1Department of Chemistry & Chemical Biology and BioMaPS Institute for Quantitative Biology, Rutgers - The State University of New Jersey,
2Department of Biological Sciences, Columbia University
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