Wilma K. Olson

Interplay of protein and DNA structure revealed in simulations of the lac operon.

Bending of DNA by asymmetric charge neutralization: all-atom energy simulations.

Sequence-dependent motions of DNA: a normal mode analysis at the base-pair level.

Accurate representation of B-DNA double helical structure with implicit solvent and counterions.

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

Implications of the dependence of the elastic properties of DNA on nucleotide sequence.

Knowledge-based elastic potentials for docking drugs or proteins with nucleic acids.

Target-site preferences of Sleeping Beauty transposons.

Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation.

A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning.

Feature extraction using molecular planes for fuzzy relational clustering of a flexible dopamine reuptake inhibitor.

nuScore: a web-interface for nucleosome positioning predictions.

Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte Carlo simulations.

3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures.

Structure, dynamics, and branch migration of a DNA Holliday junction: a single-molecule fluorescence and modeling study.

BPS: a database of RNA base-pair structures.

PREDICTED EFFECTS OF LOCAL CONFORMATIONAL COUPLING AND EXTERNAL RESTRAINTS ON THE TORSIONAL PROPERTIES OF SINGLE DNA MOLECULES.

New information content in RNA base pairing deduced from quantitative analysis of high-resolution structures.

DNA sequence-directed organization of chromatin: structure-based computational analysis of nucleosome-binding sequences.

Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures.

3DNALandscapes: a database for exploring the conformational features of DNA.

Two perspectives on the twist of DNA.

How stiff is DNA?

The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex.

DNA architecture, deformability, and nucleosome positioning.

Long-range effects of histone point mutations on DNA remodeling revealed from computational analyses of SIN-mutant nucleosome structures.

Properties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNA.

Nucleic-acid structural deformability deduced from anisotropic displacement parameters.

Understanding apparent DNA flexibility enhancement by HU and HMGB architectural proteins.

Working the kinks out of nucleosomal DNA.

Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.

Understanding the Sequence Preference of Recurrent RNA Building Blocks using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform.

Computational opportunities for remote collaboration and capacity building afforded by Web 2.0 and cloud computing.

Insights into Gene Expression and Packaging from Computer Simulations.

Structural insights into the role of architectural proteins in DNA looping deduced from computer simulations.

Can nucleosomal DNA be described by an elastic model?: Comment on "Sequence-dependent collective properties of DNAs and their role in biological systems" by Pasquale De Santis and Anita Scipioni.