Sheng Zhong

Enabling interspecies epigenomic comparison with CEpBrowser.

Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions.

From genomes to societies: a holistic view of determinants of human health.

Comparative epigenomics: defining and utilizing epigenomic variations across species, time-course, and individuals.

Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing.

P16INK4a Upregulation Mediated by SIX6 Defines Retinal Ganglion Cell Pathogenesis in Glaucoma.

GeNemo: a search engine for web-based functional genomic data.

Transcriptomic insights into the genetic basis of mammalian limb diversity.

SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination.

The 4D nucleome project.

Trends in Cannabis Use Disorder among Pregnant Women in the U.S., 1993-2014.

GIVE: portable genome browsers for personal websites.

RNA, Action through Interactions.

RNAs as Proximity-Labeling Media for Identifying Nuclear Speckle Positions Relative to the Genome.

Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos.

GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data.

A likelihood approach to testing hypotheses on the co-evolution of epigenome and genome.

EpiAlignment: alignment with both DNA sequence and epigenomic data.

Extracellular RNA in a single droplet of human serum reflects physiologic and disease states.

Reply to Hartl and Gao: Lack of between-batch difference in the distributions of measured extracellular RNA levels.

Reply to Verwilt et al.: Experimental evidence against DNA contamination in SILVER-seq.

Natural display of nuclear-encoded RNA on the cell surface and its impact on cell interaction.

Stress-induced RNA-chromatin interactions promote endothelial dysfunction.